-
1
-
-
44349123303
-
Multi-locus sequence typing of Bartonella henselae isolates from three continents reveals hypervirulent and feline-associated clones
-
Arvand M, Feil EJ, Giladi M, Boulouis HJ, Viezens J. (2007). Multi-locus sequence typing of Bartonella henselae isolates from three continents reveals hypervirulent and feline-associated clones. PLoS ONE 2: e1346.
-
(2007)
PLoS ONE
, vol.2
-
-
Arvand, M.1
Feil, E.J.2
Giladi, M.3
Boulouis, H.J.4
Viezens, J.5
-
2
-
-
33750971758
-
Multilocus sequence typing system for the endosymbiont Wolbachia pipientis
-
Baldo L, Dunning Hotopp JC, Jolley KA, Bordenstein SR, Biber SA, Choudhury RR et al. (2006). Multilocus sequence typing system for the endosymbiont Wolbachia pipientis. Appl Environ Microbiol 72: 7098-7110.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 7098-7110
-
-
Baldo, L.1
Dunning Hotopp, J.C.2
Jolley, K.A.3
Bordenstein, S.R.4
Biber, S.A.5
Choudhury, R.R.6
-
3
-
-
0008693995
-
Evolution of sexual reproduction: Importance of DNA repair, complementation, and variation
-
Bernstein H, Byers GS, Michod RE. (1981). Evolution of sexual reproduction: importance of DNA repair, complementation, and variation. Am Nat 117: 537-549.
-
(1981)
Am Nat
, vol.117
, pp. 537-549
-
-
Bernstein, H.1
Byers, G.S.2
Michod, R.E.3
-
4
-
-
35449005658
-
The evolution of genetic structure in the marine pathogen, Vibrio vulnificus
-
Bisharat N, Cohen DI, Maiden MC, Crook DW, Peto T, Harding RM. (2007). The evolution of genetic structure in the marine pathogen, Vibrio vulnificus. Infect Genet Evol 7: 685-693.
-
(2007)
Infect Genet Evol
, vol.7
, pp. 685-693
-
-
Bisharat, N.1
Cohen, D.I.2
Maiden, M.C.3
Crook, D.W.4
Peto, T.5
Harding, R.M.6
-
5
-
-
33847229830
-
Evolutionary dynamics of Ralstonia solanacearum
-
Castillo JA, Greenberg JT. (2007). Evolutionary dynamics of Ralstonia solanacearum. Appl Environ Microbiol 73: 1225-1238.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 1225-1238
-
-
Castillo, J.A.1
Greenberg, J.T.2
-
6
-
-
1542409039
-
Assessment of evolution of pandemic Vibrio parahaemolyticus by multilocus sequence typing
-
Chowdhury NR, Stine OC, Morris JG, Nair GB. (2004). Assessment of evolution of pandemic Vibrio parahaemolyticus by multilocus sequence typing. J Clin Microbiol 42: 1280-1282.
-
(2004)
J Clin Microbiol
, vol.42
, pp. 1280-1282
-
-
Chowdhury, N.R.1
Stine, O.C.2
Morris, J.G.3
Nair, G.B.4
-
7
-
-
3843102542
-
Comparative genetic diversity of Pseudomonas stutzeri genomovars, clonal structure, and phylogeny of the species
-
Cladera AM, Bennasar A, Barcelo M, Lalucat J, Garcia-Valdes E. (2004). Comparative genetic diversity of Pseudomonas stutzeri genomovars, clonal structure, and phylogeny of the species. J Bacteriol 186: 5239-5248.
-
(2004)
J Bacteriol
, vol.186
, pp. 5239-5248
-
-
Cladera, A.M.1
Bennasar, A.2
Barcelo, M.3
Lalucat, J.4
Garcia-Valdes, E.5
-
8
-
-
0036407157
-
What are bacterial species?
-
Cohan FM. (2002). What are bacterial species? Annu Rev Microbiol 56: 457-487.
-
(2002)
Annu Rev Microbiol
, vol.56
, pp. 457-487
-
-
Cohan, F.M.1
-
9
-
-
33846981510
-
Population structure and recombination in environmental isolates of Legionella pneumophila
-
Coscolla M, Gonzalez-Candelas F. (2007). Population structure and recombination in environmental isolates of Legionella pneumophila. Environ Microbiol 9: 643-656.
-
(2007)
Environ Microbiol
, vol.9
, pp. 643-656
-
-
Coscolla, M.1
Gonzalez-Candelas, F.2
-
10
-
-
10444271036
-
Allelic diversity and population structure in Oenococcus oeni as determined from sequence analysis of housekeeping genes
-
de Las Rivas B, Marcobal A, Munoz R. (2004). Allelic diversity and population structure in Oenococcus oeni as determined from sequence analysis of housekeeping genes. Appl Environ Microbiol 70: 7210-7219.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 7210-7219
-
-
de Las Rivas, B.1
Marcobal, A.2
Munoz, R.3
-
11
-
-
35448962013
-
Multilocus multilocus sequence typing of Lactobacillus casei (L. paracasei) reveals a clonal population structure with low levels of homologous recombination
-
Diancourt L, Passet V, Chervaux C, Garault P, Smokvina T, Brisse S. (2007). Multilocus multilocus sequence typing of Lactobacillus casei (L. paracasei) reveals a clonal population structure with low levels of homologous recombination. Appl Environ Microbiol 73: 6601-6611.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 6601-6611
-
-
Diancourt, L.1
Passet, V.2
Chervaux, C.3
Garault, P.4
Smokvina, T.5
Brisse, S.6
-
12
-
-
23744446161
-
Multilocus sequence typing of Klebsiella pneumoniae nosocomial isolates
-
Diancourt L, Passet V, Verhoef J, Grimont PA, Brisse S. (2005). Multilocus sequence typing of Klebsiella pneumoniae nosocomial isolates. J Clin Microbiol 43: 4178-4182.
-
(2005)
J Clin Microbiol
, vol.43
, pp. 4178-4182
-
-
Diancourt, L.1
Passet, V.2
Verhoef, J.3
Grimont, P.A.4
Brisse, S.5
-
13
-
-
45149107161
-
Bordetella pertussis, the causative agent of whooping cough, evolved from a distinct, human-associated lineage of B. bronchiseptica
-
Diavatopoulos DA, Cummings CA, Schouls LM, Brinig MM, Relman DA, Mooi FR. (2005). Bordetella pertussis, the causative agent of whooping cough, evolved from a distinct, human-associated lineage of B. bronchiseptica. PLoS Pathog 1: e45.
-
(2005)
PLoS Pathog
, vol.1
-
-
Diavatopoulos, D.A.1
Cummings, C.A.2
Schouls, L.M.3
Brinig, M.M.4
Relman, D.A.5
Mooi, F.R.6
-
14
-
-
34249027580
-
Inference of bacterial microevolution using multilocus sequence data
-
Didelot X, Falush D. (2007). Inference of bacterial microevolution using multilocus sequence data. Genetics 175: 1251-1266.
-
(2007)
Genetics
, vol.175
, pp. 1251-1266
-
-
Didelot, X.1
Falush, D.2
-
15
-
-
30744467468
-
Multilocus sequence typing of Porphyromonas gingivalis strains from different geographic origins
-
Enersen M, Olsen I, van Winkelhoff AJ, Caugant DA. (2006). Multilocus sequence typing of Porphyromonas gingivalis strains from different geographic origins. J Clin Microbiol 44: 35-41.
-
(2006)
J Clin Microbiol
, vol.44
, pp. 35-41
-
-
Enersen, M.1
Olsen, I.2
van Winkelhoff, A.J.3
Caugant, D.A.4
-
16
-
-
0034005677
-
Multilocus sequence typing for characterization of methicillin-resistant and methicillin-susceptible clones of Staphylococcus aureus
-
Enright MC, Day NP, Davies CE, Peacock SJ, Spratt BG. (2000). Multilocus sequence typing for characterization of methicillin-resistant and methicillin-susceptible clones of Staphylococcus aureus. J Clin Microbiol 38: 1008-1015.
-
(2000)
J Clin Microbiol
, vol.38
, pp. 1008-1015
-
-
Enright, M.C.1
Day, N.P.2
Davies, C.E.3
Peacock, S.J.4
Spratt, B.G.5
-
17
-
-
0035082969
-
Multilocus sequence typing of Streptococcus pyogenes and the relationships between emm type and clone
-
Enright MC, Spratt BG, Kalia A, Cross JH, Bessen DE. (2001). Multilocus sequence typing of Streptococcus pyogenes and the relationships between emm type and clone. Infect Immun 69: 2416-2427.
-
(2001)
Infect Immun
, vol.69
, pp. 2416-2427
-
-
Enright, M.C.1
Spratt, B.G.2
Kalia, A.3
Cross, J.H.4
Bessen, D.E.5
-
18
-
-
35048898799
-
Genetic exchange across a species boundary in the archaeal genus ferroplasma
-
Eppley JM, Tyson GW, Getz WM, Banfield JF. (2007). Genetic exchange across a species boundary in the archaeal genus ferroplasma. Genetics 177: 407-416.
-
(2007)
Genetics
, vol.177
, pp. 407-416
-
-
Eppley, J.M.1
Tyson, G.W.2
Getz, W.M.3
Banfield, J.F.4
-
19
-
-
0035909914
-
Recombination and mutation during long-term gastric colonization by Helicobacter pylori: Estimates of clock rates, recombination size, and minimal age
-
Falush D, Kraft C, Taylor NS, Correa P, Fox JG, Achtman M et al. (2001). Recombination and mutation during long-term gastric colonization by Helicobacter pylori: estimates of clock rates, recombination size, and minimal age. Proc Natl Acad Sci USA 98: 15056-15061.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 15056-15061
-
-
Falush, D.1
Kraft, C.2
Taylor, N.S.3
Correa, P.4
Fox, J.G.5
Achtman, M.6
-
20
-
-
25144485341
-
Analysis of recombination in Campylobacter jejuni from MLST population data
-
Fearnhead P, Smith NG, Barrigas M, Fox A, French N. (2005). Analysis of recombination in Campylobacter jejuni from MLST population data. J Mol Evol 61: 333-340.
-
(2005)
J Mol Evol
, vol.61
, pp. 333-340
-
-
Fearnhead, P.1
Smith, N.G.2
Barrigas, M.3
Fox, A.4
French, N.5
-
21
-
-
2942679276
-
Small change: Keeping pace with microevolution
-
Feil EJ. (2004). Small change: keeping pace with microevolution. Nature Rev Microbiol 2: 483-495.
-
(2004)
Nature Rev Microbiol
, vol.2
, pp. 483-495
-
-
Feil, E.J.1
-
22
-
-
0035793056
-
Recombination within natural populations of pathogenic bacteria: Short-term empirical estimates and long-term phylogenetic consequences
-
Feil EJ, Holmes EC, Bessen DE, Chan MS, Day NP, Enright MC et al. (2001). Recombination within natural populations of pathogenic bacteria: short-term empirical estimates and long-term phylogenetic consequences. Proc Natl Acad Sci USA 98: 182-187.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 182-187
-
-
Feil, E.J.1
Holmes, E.C.2
Bessen, D.E.3
Chan, M.S.4
Day, N.P.5
Enright, M.C.6
-
23
-
-
1342304133
-
eBURST: Inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
-
Feil EJ, Li BC, Aanensen DM, Hanage WP, Spratt BG. (2004). eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J Bacteriol 186: 1518-1530.
-
(2004)
J Bacteriol
, vol.186
, pp. 1518-1530
-
-
Feil, E.J.1
Li, B.C.2
Aanensen, D.M.3
Hanage, W.P.4
Spratt, B.G.5
-
25
-
-
34447296239
-
Multilocus sequence analysis of biocontrol fluorescent Pseudomonas spp. producing the antifungal compound 2,4-diacetylphloroglucinol
-
Frapolli M, Defago G, Moenne-Loccoz Y. (2007). Multilocus sequence analysis of biocontrol fluorescent Pseudomonas spp. producing the antifungal compound 2,4-diacetylphloroglucinol. Environ Microbiol 9: 1939-1955.
-
(2007)
Environ Microbiol
, vol.9
, pp. 1939-1955
-
-
Frapolli, M.1
Defago, G.2
Moenne-Loccoz, Y.3
-
26
-
-
13844309567
-
Neutral microepidemic evolution of bacterial pathogens
-
Fraser C, Hanage WP, Spratt BG. (2005). Neutral microepidemic evolution of bacterial pathogens. Proc Natl Acad Sci USA 102: 1968-1973.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 1968-1973
-
-
Fraser, C.1
Hanage, W.P.2
Spratt, B.G.3
-
27
-
-
84972492387
-
Inference from iterative simulation using multiple sequences
-
Gelman A, Rubin DB. (1992). Inference from iterative simulation using multiple sequences. Stat Sci 7: 457-472.
-
(1992)
Stat Sci
, vol.7
, pp. 457-472
-
-
Gelman, A.1
Rubin, D.B.2
-
28
-
-
0032443222
-
Antigenic diversity and gene polymorphisms in Haemophilus influenzae
-
Gilsdorf JR. (1998). Antigenic diversity and gene polymorphisms in Haemophilus influenzae. Infect Immun 66: 5053-5059.
-
(1998)
Infect Immun
, vol.66
, pp. 5053-5059
-
-
Gilsdorf, J.R.1
-
29
-
-
41949117270
-
Determination of molecular phylogenetics of Vibrio parahaemolyticus strains by multilocus sequence typing
-
Gonzalez-Escalona N, Martinez-Urtaza J, Romero J, Espejo RT, Jaykus LA, Depaola A. (2008). Determination of molecular phylogenetics of Vibrio parahaemolyticus strains by multilocus sequence typing. J Bacteriol 190: 2831-2840.
-
(2008)
J Bacteriol
, vol.190
, pp. 2831-2840
-
-
Gonzalez-Escalona, N.1
Martinez-Urtaza, J.2
Romero, J.3
Espejo, R.T.4
Jaykus, L.A.5
Depaola, A.6
-
30
-
-
13744251729
-
Genetic diversity, recombination and cryptic clades in Pseudomonas viridiflava infecting natural populations of Arabidopsis thaliana
-
Goss EM, Kreitman M, Bergelson J. (2005). Genetic diversity, recombination and cryptic clades in Pseudomonas viridiflava infecting natural populations of Arabidopsis thaliana. Genetics 169: 21-35.
-
(2005)
Genetics
, vol.169
, pp. 21-35
-
-
Goss, E.M.1
Kreitman, M.2
Bergelson, J.3
-
31
-
-
0031436694
-
Recombination and clonality in natural populations of Escherichia coli
-
Guttman DS. (1997). Recombination and clonality in natural populations of Escherichia coli. Trends Ecol Evol 12: 16-22.
-
(1997)
Trends Ecol Evol
, vol.12
, pp. 16-22
-
-
Guttman, D.S.1
-
32
-
-
0028605344
-
Clonal divergence in Escherichia coli as a result of recombination, not mutation
-
Guttman DS, Dykhuizen DE. (1994). Clonal divergence in Escherichia coli as a result of recombination, not mutation. Science 266: 1380-1383.
-
(1994)
Science
, vol.266
, pp. 1380-1383
-
-
Guttman, D.S.1
Dykhuizen, D.E.2
-
33
-
-
33644613784
-
The impact of homologous recombination on the generation of diversity in bacteria
-
Hanage WP, Fraser C, Spratt BG. (2006). The impact of homologous recombination on the generation of diversity in bacteria. J Theor Biol 239: 210-219.
-
(2006)
J Theor Biol
, vol.239
, pp. 210-219
-
-
Hanage, W.P.1
Fraser, C.2
Spratt, B.G.3
-
34
-
-
24344461357
-
Using multilocus sequence data to define the pneumococcus
-
Hanage WP, Kaijalainen T, Herva E, Saukkoriipi A, Syrjanen R, Spratt BG. (2005). Using multilocus sequence data to define the pneumococcus. J Bacteriol 187: 6223-6230.
-
(2005)
J Bacteriol
, vol.187
, pp. 6223-6230
-
-
Hanage, W.P.1
Kaijalainen, T.2
Herva, E.3
Saukkoriipi, A.4
Syrjanen, R.5
Spratt, B.G.6
-
36
-
-
0036421628
-
Genetic diversity within populations of cyanobacteria assessed by analysis of single filaments
-
Hayes PK, Barker GL, Batley J, Beard SJ, Handley BA, Vacharapiyasophon P et al. (2002). Genetic diversity within populations of cyanobacteria assessed by analysis of single filaments. Antonie Leeuwenhoek 81: 197-202.
-
(2002)
Antonie Leeuwenhoek
, vol.81
, pp. 197-202
-
-
Hayes, P.K.1
Barker, G.L.2
Batley, J.3
Beard, S.J.4
Handley, B.A.5
Vacharapiyasophon, P.6
-
37
-
-
0036259775
-
Multilocus sequence typing scheme for Enterococcus faecium
-
Homan WL, Tribe D, Poznanski S, Li M, Hogg G, Spalburg E et al. (2002). Multilocus sequence typing scheme for Enterococcus faecium. J Clin Microbiol 40: 1963-1971.
-
(2002)
J Clin Microbiol
, vol.40
, pp. 1963-1971
-
-
Homan, W.L.1
Tribe, D.2
Poznanski, S.3
Li, M.4
Hogg, G.5
Spalburg, E.6
-
38
-
-
0020744702
-
Properties of a neutral allele model with intragenic recombination
-
Hudson RR. (1983). Properties of a neutral allele model with intragenic recombination. Theor Popul Biol 23: 183-201.
-
(1983)
Theor Popul Biol
, vol.23
, pp. 183-201
-
-
Hudson, R.R.1
-
39
-
-
14544305228
-
The influence of mutation, recombination, population history, and selection on patterns of genetic diversity in Neisseria meningitidis
-
Jolley KA, Wilson DJ, Kriz P, McVean G, Maiden MC. (2005). The influence of mutation, recombination, population history, and selection on patterns of genetic diversity in Neisseria meningitidis. Mol Biol Evol 22: 562-569.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 562-569
-
-
Jolley, K.A.1
Wilson, D.J.2
Kriz, P.3
McVean, G.4
Maiden, M.C.5
-
40
-
-
0000732090
-
Evolution of protein molecules
-
Munro HN ed, Academic Press: New York, pp
-
Jukes TH, Cantor CR. (1969). Evolution of protein molecules. In: Munro HN (ed). Mammalian Protein Metabolism III. Academic Press: New York, pp 21-132.
-
(1969)
Mammalian Protein Metabolism III
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
42
-
-
2942594170
-
Multilocus sequence typing analysis of human and animal Clostridium difficile isolates of various toxigenic types
-
Lemee L, Dhalluin A, Pestel-Caron M, Lemeland JF, Pons JL. (2004). Multilocus sequence typing analysis of human and animal Clostridium difficile isolates of various toxigenic types. J Clin Microbiol 42: 2609-2617.
-
(2004)
J Clin Microbiol
, vol.42
, pp. 2609-2617
-
-
Lemee, L.1
Dhalluin, A.2
Pestel-Caron, M.3
Lemeland, J.F.4
Pons, J.L.5
-
43
-
-
34047169728
-
Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria
-
Lo I, Denef VJ, Verberkmoes NC, Shah MB, Goltsman D, DiBartolo G et al. (2007). Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria. Nature 446: 537-541.
-
(2007)
Nature
, vol.446
, pp. 537-541
-
-
Lo, I.1
Denef, V.J.2
Verberkmoes, N.C.3
Shah, M.B.4
Goltsman, D.5
DiBartolo, G.6
-
44
-
-
14344252773
-
Frequent genetic recombination in natural populations of the marine cyanobacterium Microcoleus chthonoplastes
-
Lodders N, Stackebrandt E, Nubel U. (2005). Frequent genetic recombination in natural populations of the marine cyanobacterium Microcoleus chthonoplastes. Environ Microbiol 7: 434-442.
-
(2005)
Environ Microbiol
, vol.7
, pp. 434-442
-
-
Lodders, N.1
Stackebrandt, E.2
Nubel, U.3
-
45
-
-
33750290454
-
Multilocus sequence typing of bacteria
-
Maiden MCJ. (2006). Multilocus sequence typing of bacteria. Annu Rev Microbiol 60: 561-588.
-
(2006)
Annu Rev Microbiol
, vol.60
, pp. 561-588
-
-
Maiden, M.C.J.1
-
46
-
-
13144252236
-
Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms
-
Maiden MCJ, Bygraves JA, Feil E, Morelli G, Russell JE, Urwin R et al. (1998). Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci USA 95: 3140-3145.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 3140-3145
-
-
Maiden, M.C.J.1
Bygraves, J.A.2
Feil, E.3
Morelli, G.4
Russell, J.E.5
Urwin, R.6
-
47
-
-
33745112085
-
Genomewide detection and analysis of homologous recombination among sequenced strains of Escherichia coli
-
Mau B, Glasner JD, Darling AE, Perna NT. (2006). Genomewide detection and analysis of homologous recombination among sequenced strains of Escherichia coli. Genome Biol 7: R44.
-
(2006)
Genome Biol
, vol.7
-
-
Mau, B.1
Glasner, J.D.2
Darling, A.E.3
Perna, N.T.4
-
49
-
-
34547400472
-
Diversity of Mycoplasma hyopneumoniae in pig farms revealed by direct molecular typing of clinical material
-
Mayor D, Zeeh F, Frey J, Kuhnert P. (2007). Diversity of Mycoplasma hyopneumoniae in pig farms revealed by direct molecular typing of clinical material. Vet Res 38: 391-398.
-
(2007)
Vet Res
, vol.38
, pp. 391-398
-
-
Mayor, D.1
Zeeh, F.2
Frey, J.3
Kuhnert, P.4
-
50
-
-
12444303202
-
Characterization of encapsulated and noncapsulated Haemophilus influenzae and determination of phylogenetic relationships by multilocus sequence typing
-
Meats E, Feil EJ, Stringer S, Cody AJ, Goldstein R, Kroll JS et al. (2003). Characterization of encapsulated and noncapsulated Haemophilus influenzae and determination of phylogenetic relationships by multilocus sequence typing. J Clin Microbiol 41: 1623-1636.
-
(2003)
J Clin Microbiol
, vol.41
, pp. 1623-1636
-
-
Meats, E.1
Feil, E.J.2
Stringer, S.3
Cody, A.J.4
Goldstein, R.5
Kroll, J.S.6
-
52
-
-
0025133386
-
Molecular evolution of the Escherichia coli chromosome. III. Clonal frames
-
Milkman R, Bridges MM. (1990). Molecular evolution of the Escherichia coli chromosome. III. Clonal frames. Genetics 126: 505-517.
-
(1990)
Genetics
, vol.126
, pp. 505-517
-
-
Milkman, R.1
Bridges, M.M.2
-
53
-
-
34547816032
-
Phylogeography of the thermophilic cyanobacterium Mastigocladus laminosus
-
Miller SR, Castenholz RW, Pedersen D. (2007). Phylogeography of the thermophilic cyanobacterium Mastigocladus laminosus. Appl Environ Microbiol 73: 4751-4759.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 4751-4759
-
-
Miller, S.R.1
Castenholz, R.W.2
Pedersen, D.3
-
54
-
-
33750607431
-
Of what use is sex to bacteria?
-
Narra HP, Ochman H. (2006). Of what use is sex to bacteria? Curr Biol 16: R705-R710.
-
(2006)
Curr Biol
, vol.16
-
-
Narra, H.P.1
Ochman, H.2
-
55
-
-
33644749286
-
Recombination in Thermotoga: Implications for species concepts and biogeography
-
Nesbo CL, Dlutek M, Doolittle WF. (2006). Recombination in Thermotoga: implications for species concepts and biogeography. Genetics 172: 759-769.
-
(2006)
Genetics
, vol.172
, pp. 759-769
-
-
Nesbo, C.L.1
Dlutek, M.2
Doolittle, W.F.3
-
56
-
-
45749090201
-
Population structure of the fish-pathogenic bacterium Flavobacterium psychrophilum
-
Nicolas P, Mondot S, Achaz G, Bouchenot C, Bernardet JF, Duchaud E. (2008). Population structure of the fish-pathogenic bacterium Flavobacterium psychrophilum. Appl Environ Microbiol 74: 3702-3709.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 3702-3709
-
-
Nicolas, P.1
Mondot, S.2
Achaz, G.3
Bouchenot, C.4
Bernardet, J.F.5
Duchaud, E.6
-
57
-
-
33845998897
-
Study of the population structure of Haemophilus parasuis by multilocus sequence typing
-
Olvera A, Cerda-Cuellar M, Aragon V. (2006). Study of the population structure of Haemophilus parasuis by multilocus sequence typing. Microbiol 152: 3683-3690.
-
(2006)
Microbiol
, vol.152
, pp. 3683-3690
-
-
Olvera, A.1
Cerda-Cuellar, M.2
Aragon, V.3
-
58
-
-
40949104851
-
Multi locus sequence typing of Chlamydiales: Clonal groupings within the obligate intracellular bacteria Chlamydia trachomatis
-
Pannekoek Y, Morelli G, Kusecek B, Morre SA, Ossewaarde JM, Langerak AA et al. (2008). Multi locus sequence typing of Chlamydiales: clonal groupings within the obligate intracellular bacteria Chlamydia trachomatis. BMC Microbiol 8: 42.
-
(2008)
BMC Microbiol
, vol.8
, pp. 42
-
-
Pannekoek, Y.1
Morelli, G.2
Kusecek, B.3
Morre, S.A.4
Ossewaarde, J.M.5
Langerak, A.A.6
-
60
-
-
33344458092
-
Population genetics of microbial pathogens estimated from multilocus sequence typing (MLST) data
-
Perez-Losada M, Browne EB, Madsen A, Wirth T, Viscidi RP, Crandall KA. (2006). Population genetics of microbial pathogens estimated from multilocus sequence typing (MLST) data. Infect Genet Evol 6: 97-112.
-
(2006)
Infect Genet Evol
, vol.6
, pp. 97-112
-
-
Perez-Losada, M.1
Browne, E.B.2
Madsen, A.3
Wirth, T.4
Viscidi, R.P.5
Crandall, K.A.6
-
61
-
-
0036097812
-
Evaluation of methods for detecting recombination from DNA sequences: Empirical data
-
Posada D. (2002). Evaluation of methods for detecting recombination from DNA sequences: empirical data. Mol Biol Evol 19: 708-717.
-
(2002)
Mol Biol Evol
, vol.19
, pp. 708-717
-
-
Posada, D.1
-
62
-
-
37448999981
-
Development of a multilocus sequence typing scheme for intestinal spirochaetes within the genus Brachyspira
-
Rasback T, Johansson KE, Jansson DS, Fellstrom C, Alikhani MY, La T et al. (2007). Development of a multilocus sequence typing scheme for intestinal spirochaetes within the genus Brachyspira. Microbiol 153: 4074-4087.
-
(2007)
Microbiol
, vol.153
, pp. 4074-4087
-
-
Rasback, T.1
Johansson, K.E.2
Jansson, D.S.3
Fellstrom, C.4
Alikhani5
MY, L.T.6
-
63
-
-
0027383458
-
Genes for breakfast: The have-your-cake-and-eat-it- too of bacterial transformation
-
Redfield RJ. (1993). Genes for breakfast: the have-your-cake-and-eat-it- too of bacterial transformation. J Hered 84: 400-404.
-
(1993)
J Hered
, vol.84
, pp. 400-404
-
-
Redfield, R.J.1
-
64
-
-
0035430787
-
Do bacteria have sex?
-
Redfield RJ. (2001). Do bacteria have sex? Nature Rev Genet 2: 634-639.
-
(2001)
Nature Rev Genet
, vol.2
, pp. 634-639
-
-
Redfield, R.J.1
-
65
-
-
33745136790
-
Multilocus sequence typing scheme for Enterococcus faecalis reveals hospital-adapted genetic complexes in a background of high rates of recombination
-
Ruiz-Garbajosa P, Bonten MJ, Robinson DA, Top J, Nallapareddy SR, Torres C et al. (2006). Multilocus sequence typing scheme for Enterococcus faecalis reveals hospital-adapted genetic complexes in a background of high rates of recombination. J Clin Microbiol 44: 2220-2228.
-
(2006)
J Clin Microbiol
, vol.44
, pp. 2220-2228
-
-
Ruiz-Garbajosa, P.1
Bonten, M.J.2
Robinson, D.A.3
Top, J.4
Nallapareddy, S.R.5
Torres, C.6
-
66
-
-
33947238287
-
The sorcerer II global ocean sampling expedition: Northwest Atlantic through eastern tropical Pacific
-
Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, Yooseph S et al. (2007). The sorcerer II global ocean sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol 5: e77.
-
(2007)
PLoS Biol
, vol.5
-
-
Rusch, D.B.1
Halpern, A.L.2
Sutton, G.3
Heidelberg, K.B.4
Williamson, S.5
Yooseph, S.6
-
67
-
-
0037312201
-
Development of a multilocus sequence typing method for analysis of Listeria monocytogenes clones
-
Salcedo C, Arreaza L, Alcala B, de la Fuente L, Vazquez JA. (2003). Development of a multilocus sequence typing method for analysis of Listeria monocytogenes clones. J Clin Microbiol 41: 757-762.
-
(2003)
J Clin Microbiol
, vol.41
, pp. 757-762
-
-
Salcedo, C.1
Arreaza, L.2
Alcala, B.3
de la Fuente, L.4
Vazquez, J.A.5
-
68
-
-
35648982422
-
Recombining population structure of the Enterobacteriaceae Plesiomonas shigelloides revealed by multilocus sequence typing
-
Salerno A, Deletoile A, Lefevre M, Ciznar I, Krovacek K, Grimont P et al. (2007). Recombining population structure of the Enterobacteriaceae Plesiomonas shigelloides revealed by multilocus sequence typing. J Bacteriol 189: 7808-7818.
-
(2007)
J Bacteriol
, vol.189
, pp. 7808-7818
-
-
Salerno, A.1
Deletoile, A.2
Lefevre, M.3
Ciznar, I.4
Krovacek, K.5
Grimont, P.6
-
69
-
-
1642319596
-
Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen
-
Sarkar SF, Guttman DS. (2004). Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen. Appl Environ Microbiol 70: 1999-2012.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 1999-2012
-
-
Sarkar, S.F.1
Guttman, D.S.2
-
70
-
-
33646167708
-
Evolutionary genetics and biogeographic structure of Rhizobium gallicum sensu lato, a widely distributed bacterial symbiont of diverse legumes
-
Silva C, Vinuesa P, Eguiarte LE, Souza V, Martinez-Romero E. (2005). Evolutionary genetics and biogeographic structure of Rhizobium gallicum sensu lato, a widely distributed bacterial symbiont of diverse legumes. Mol Ecol 14: 4033-4050.
-
(2005)
Mol Ecol
, vol.14
, pp. 4033-4050
-
-
Silva, C.1
Vinuesa, P.2
Eguiarte, L.E.3
Souza, V.4
Martinez-Romero, E.5
-
71
-
-
33144459447
-
Multiplelocus sequence typing analysis of Bacillus cereus and Bacillus thuringiensis reveals separate clustering and a distinct population structure of psychrotrophic strains
-
Sorokin A, Candelon B, Guilloux K, Galleron N, Wackerow-Kouzova N, Ehrlich SD et al. (2006). Multiplelocus sequence typing analysis of Bacillus cereus and Bacillus thuringiensis reveals separate clustering and a distinct population structure of psychrotrophic strains. Appl Environ Microbiol 72: 1569-1578.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 1569-1578
-
-
Sorokin, A.1
Candelon, B.2
Guilloux, K.3
Galleron, N.4
Wackerow-Kouzova, N.5
Ehrlich, S.D.6
-
72
-
-
0026743963
-
Hierarchical analysis of linkage disequilibrium in rhizobium populations - evidence for sex
-
Souza V, Nguyen TT, Hudson RR, Pinero D, Lenski RE. (1992). Hierarchical analysis of linkage disequilibrium in rhizobium populations - evidence for sex. Proc Natl Acad Sci USA 89: 8389-8393.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 8389-8393
-
-
Souza, V.1
Nguyen, T.T.2
Hudson, R.R.3
Pinero, D.4
Lenski, R.E.5
-
73
-
-
10444224623
-
Displaying the relatedness among isolates of bacterial species - the eBURST approach
-
Spratt BG, Hanage WP, Li B, Aanensen DM, Feil EJ. (2004). Displaying the relatedness among isolates of bacterial species - the eBURST approach. FEMS Microbiol Lett 241: 129-134.
-
(2004)
FEMS Microbiol Lett
, vol.241
, pp. 129-134
-
-
Spratt, B.G.1
Hanage, W.P.2
Li, B.3
Aanensen, D.M.4
Feil, E.J.5
-
74
-
-
33947413118
-
Campylobacter insulaenigrae isolates from northern elephant seals (Mirounga angustirostris) in California
-
Stoddard RA, Miller WG, Foley JE, Lawrence J, Gulland FM, Conrad PA et al. (2007). Campylobacter insulaenigrae isolates from northern elephant seals (Mirounga angustirostris) in California. Appl Environ Microbiol 73: 1729-1735.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 1729-1735
-
-
Stoddard, R.A.1
Miller, W.G.2
Foley, J.E.3
Lawrence, J.4
Gulland, F.M.5
Conrad, P.A.6
-
75
-
-
0344441428
-
Estimating recombination rates from population-genetic data
-
Stumpf MP, McVean GA. (2003). Estimating recombination rates from population-genetic data. Nature Rev Genet 4: 959-968.
-
(2003)
Nature Rev Genet
, vol.4
, pp. 959-968
-
-
Stumpf, M.P.1
McVean, G.A.2
-
76
-
-
13144251208
-
Free recombination within Helicobacter pylori
-
Suerbaum S, Smith JM, Bapumia K, Morelli G, Smith NH, Kunstmann E et al. (1998). Free recombination within Helicobacter pylori. Proc Natl Acad Sci USA 95: 12619-12624.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 12619-12624
-
-
Suerbaum, S.1
Smith, J.M.2
Bapumia, K.3
Morelli, G.4
Smith, N.H.5
Kunstmann, E.6
-
77
-
-
0037189373
-
50 million years of genomic stasis in Endosymbiotic Bacteria
-
Tamas I, Klasson L, Canback B, Naslund AK, Eriksson AS, Wernegreen JJ et al. (2002). 50 million years of genomic stasis in Endosymbiotic Bacteria. Science 296: 2376-2379.
-
(2002)
Science
, vol.296
, pp. 2376-2379
-
-
Tamas, I.1
Klasson, L.2
Canback, B.3
Naslund, A.K.4
Eriksson, A.S.5
Wernegreen, J.J.6
-
78
-
-
36448942567
-
Multilocus sequence typing (MLST) reveals high genetic diversity and clonal population structure of the toxic cyanobacterium Microcystis aeruginosa
-
Tanabe Y, Kasai F, Watanabe MM. (2007). Multilocus sequence typing (MLST) reveals high genetic diversity and clonal population structure of the toxic cyanobacterium Microcystis aeruginosa. Microbiol 153: 3695-3703.
-
(2007)
Microbiol
, vol.153
, pp. 3695-3703
-
-
Tanabe, Y.1
Kasai, F.2
Watanabe, M.M.3
-
79
-
-
39449116981
-
A dominant clone of Leptospira interrogans associated with an outbreak of human leptospirosis in Thailand
-
Thaipadungpanit J, Wuthiekanun V, Chierakul W, Smythe LD, Petkanchanapong W, Limpaiboon R et al. (2007). A dominant clone of Leptospira interrogans associated with an outbreak of human leptospirosis in Thailand. PLoS Negl Trop Dis 1: e56.
-
(2007)
PLoS Negl Trop Dis
, vol.1
-
-
Thaipadungpanit, J.1
Wuthiekanun, V.2
Chierakul, W.3
Smythe, L.D.4
Petkanchanapong, W.5
Limpaiboon, R.6
-
80
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM et al. (2004). Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428: 37-43.
-
(2004)
Nature
, vol.428
, pp. 37-43
-
-
Tyson, G.W.1
Chapman, J.2
Hugenholtz, P.3
Allen, E.E.4
Ram, R.J.5
Richardson, P.M.6
-
81
-
-
34548406920
-
High intraspecific recombination rate in a native population of Candidatus pelagibacter ubique (SAR11)
-
Vergin KL, Tripp HJ, Wilhelm LJ, Denver DR, Rappe MS, Giovannoni SJ. (2007). High intraspecific recombination rate in a native population of Candidatus pelagibacter ubique (SAR11). Environ Microbiol 9: 2430-2440.
-
(2007)
Environ Microbiol
, vol.9
, pp. 2430-2440
-
-
Vergin, K.L.1
Tripp, H.J.2
Wilhelm, L.J.3
Denver, D.R.4
Rappe, M.S.5
Giovannoni, S.J.6
-
82
-
-
40149090779
-
Isolation by distance in the spore-forming soil bacterium Myxococcus xanthus
-
Vos M, Velicer GJ. (2008). Isolation by distance in the spore-forming soil bacterium Myxococcus xanthus. Curr Biol 18: 386-391.
-
(2008)
Curr Biol
, vol.18
, pp. 386-391
-
-
Vos, M.1
Velicer, G.J.2
-
83
-
-
34547702305
-
Genetic diversity and population structure of Escherichia coli isolated from freshwater beaches
-
Walk ST, Alm EW, Calhoun LM, Mladonicky JM, Whittam TS. (2007). Genetic diversity and population structure of Escherichia coli isolated from freshwater beaches. Environ Microbiol 9: 2274-2288.
-
(2007)
Environ Microbiol
, vol.9
, pp. 2274-2288
-
-
Walk, S.T.1
Alm, E.W.2
Calhoun, L.M.3
Mladonicky, J.M.4
Whittam, T.S.5
-
84
-
-
0017886236
-
Homozygosity test of neutrality
-
Watterson GA. (1978). Homozygosity test of neutrality. Genetics 88: 405-417.
-
(1978)
Genetics
, vol.88
, pp. 405-417
-
-
Watterson, G.A.1
-
85
-
-
27844577665
-
Recombination shapes the natural population structure of the hyperthermophilic archaeon Sulfolobus islandicus
-
Whitaker RJ, Grogan DW, Taylor JW. (2005). Recombination shapes the natural population structure of the hyperthermophilic archaeon Sulfolobus islandicus. Mol Biol Evol 22: 2354-2361.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 2354-2361
-
-
Whitaker, R.J.1
Grogan, D.W.2
Taylor, J.W.3
-
86
-
-
0001771498
-
Evolution in Mendelian populations
-
Wright S. (1931). Evolution in Mendelian populations. Genetics 16: 97-159.
-
(1931)
Genetics
, vol.16
, pp. 97-159
-
-
Wright, S.1
|