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Volumn 193, Issue 15, 2011, Pages 3964-3977

Lateral Transfer of genes and gene fragments in Staphylococcus extends beyond mobile elements

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTIC AGENT; HEAVY METAL;

EID: 79960408082     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.01524-10     Document Type: Article
Times cited : (37)

References (108)
  • 1
    • 0346494941 scopus 로고    scopus 로고
    • SCOP database in 2004, refinements integrate structure and sequence family data
    • Andreeva, A., et al. 2004. SCOP database in 2004: refinements integrate structure and sequence family data. Nucleic Acids Res. 32:D226-D229.
    • (2004) Nucleic Acids Res , vol.32
    • Andreeva, A.1
  • 2
    • 77957056623 scopus 로고    scopus 로고
    • Fatal staphylococcal infection following classic dengue fever
    • Araújo, S. A., et al. 2010. Fatal staphylococcal infection following classic dengue fever. Am. J. Trop. Med. Hyg. 83:679-682.
    • (2010) Am. J. Trop. Med. Hyg. , vol.83 , pp. 679-682
    • Araújo, S.A.1
  • 3
    • 0036303409 scopus 로고    scopus 로고
    • Gene duplication and gene conversion shape the evolution of archaeal chaperonins
    • Archibald, J. M., and A. J. Roger. 2002. Gene duplication and gene conversion shape the evolution of archaeal chaperonins. J. Mol. Biol. 316: 1041-1050.
    • (2002) J. Mol. Biol. , vol.316 , pp. 1041-1050
    • Archibald, J.M.1    Roger, A.J.2
  • 4
    • 0037172403 scopus 로고    scopus 로고
    • Genome and virulence determinants of high virulence community-acquired MRSA
    • Baba, T., et al. 2002. Genome and virulence determinants of high virulence community-acquired MRSA. Lancet 359:1819-1827.
    • (2002) Lancet , vol.359 , pp. 1819-1827
    • Baba, T.1
  • 5
    • 70449515444 scopus 로고    scopus 로고
    • Prokaryotic evolution and the tree of life are two different things
    • Bapteste, E., et al. 2009. Prokaryotic evolution and the tree of life are two different things. Biol. Direct 4:34.
    • (2009) Biol. Direct , vol.4 , pp. 34
    • Bapteste, E.1
  • 6
    • 65549165914 scopus 로고    scopus 로고
    • What antimicrobial resistance has taught us about horizontal gene transfer
    • Barlow, M. 2009. What antimicrobial resistance has taught us about horizontal gene transfer. Methods Mol. Biol. 532:397-411.
    • (2009) Methods Mol. Biol. , vol.532 , pp. 397-411
    • Barlow, M.1
  • 7
    • 19544381576 scopus 로고    scopus 로고
    • A word-oriented approach to alignment validation
    • Beiko, R. G., C. X. Chan, and M. A. Ragan. 2005. A word-oriented approach to alignment validation. Bioinformatics 21:2230-2239.
    • (2005) Bioinformatics , vol.21 , pp. 2230-2239
    • Beiko, R.G.1    Chan, C.X.2    Ragan, M.A.3
  • 9
    • 77955637274 scopus 로고    scopus 로고
    • Methicillin resistance transfer from Staphylocccus epidermidis to methicillin-susceptible Staphylococcus aureus in a patient during antibiotic therapy
    • Bloemendaal, A. L. A., E. C. Brouwer, and A. C. Fluit. 2010. Methicillin resistance transfer from Staphylocccus epidermidis to methicillin-susceptible Staphylococcus aureus in a patient during antibiotic therapy. PLoS One 5:e11841.
    • (2010) PLoS One , vol.5
    • Bloemendaal, A.L.A.1    Brouwer, E.C.2    Fluit, A.C.3
  • 10
    • 0026644395 scopus 로고
    • Proposed acquisition of an animal protein domain by bacteria
    • Bork, P., and R. F. Doolittle. 1992. Proposed acquisition of an animal protein domain by bacteria. Proc. Natl. Acad. Sci. U. S. A. 89:8990-8994.
    • (1992) Proc. Natl. Acad. Sci. U. S. A. , vol.89 , pp. 8990-8994
    • Bork, P.1    Doolittle, R.F.2
  • 11
    • 52449111283 scopus 로고    scopus 로고
    • Horizontal gene transfers link a human MRSA pathogen to contagious bovine mastitis bacteria
    • Brody, T., et al. 2008. Horizontal gene transfers link a human MRSA pathogen to contagious bovine mastitis bacteria. PLoS One 3:e3074.
    • (2008) PLoS One , vol.3
    • Brody, T.1
  • 12
    • 33646167864 scopus 로고    scopus 로고
    • A simple and robust statistical test for detecting the presence of recombination
    • Bruen, T. C., H. Philippe, and D. Bryant. 2006. A simple and robust statistical test for detecting the presence of recombination. Genetics 172: 2665-2681.
    • (2006) Genetics , vol.172 , pp. 2665-2681
    • Bruen, T.C.1    Philippe, H.2    Bryant, D.3
  • 13
    • 74049108922 scopus 로고    scopus 로고
    • BLAST+: architecture and applications
    • Camacho, C., et al. 2009. BLAST+: architecture and applications. BMC Bioinform. 10:421.
    • (2009) BMC Bioinform , vol.10 , pp. 421
    • Camacho, C.1
  • 14
    • 69249083586 scopus 로고    scopus 로고
    • Waves of resistance: Staphylococcus aureus in the antibiotic era
    • Chambers, H. F., and F. R. Deleo. 2009. Waves of resistance: Staphylococcus aureus in the antibiotic era. Nat. Rev. Microbiol. 7:629-641.
    • (2009) Nat. Rev. Microbiol. , vol.7 , pp. 629-641
    • Chambers, H.F.1    Deleo, F.R.2
  • 15
    • 78650744807 scopus 로고    scopus 로고
    • Lateral transfer of genes and gene fragments in prokaryotes
    • Chan, C. X., R. G. Beiko, A. E. Darling, and M. A. Ragan. 2009. Lateral transfer of genes and gene fragments in prokaryotes. Genome Biol. Evol. 1:429-438.
    • (2009) Genome Biol. Evol. , vol.1 , pp. 429-438
    • Chan, C.X.1    Beiko, R.G.2    Darling, A.E.3    Ragan, M.A.4
  • 16
    • 33749613832 scopus 로고    scopus 로고
    • Detecting recombination in evolving nucleotide sequences
    • Chan, C. X., R. G. Beiko, and M. A. Ragan. 2006. Detecting recombination in evolving nucleotide sequences. BMC Bioinform. 7:412.
    • (2006) BMC Bioinform , vol.7 , pp. 412
    • Chan, C.X.1    Beiko, R.G.2    Ragan, M.A.3
  • 17
    • 68149181434 scopus 로고    scopus 로고
    • A two-phase strategy for detecting recombination in nucleotide sequences
    • Chan, C. X., R. G. Beiko, and M. A. Ragan. 2007. A two-phase strategy for detecting recombination in nucleotide sequences. S. Afr. Comput. J. 38:20-27.
    • (2007) S. Afr. Comput. J. , vol.38 , pp. 20-27
    • Chan, C.X.1    Beiko, R.G.2    Ragan, M.A.3
  • 18
    • 84887212360 scopus 로고    scopus 로고
    • Are protein domains modules of lateral genetic transfer?
    • Chan, C. X., A. E. Darling, R. G. Beiko, and M. A. Ragan. 2009. Are protein domains modules of lateral genetic transfer? PLoS One 4:e4524.
    • (2009) PLoS One , vol.4
    • Chan, C.X.1    Darling, A.E.2    Beiko, R.G.3    Ragan, M.A.4
  • 19
    • 58149213882 scopus 로고    scopus 로고
    • Phage-mediated intergeneric transfer of toxin genes
    • Chen, J., and R. P. Novick. 2009. Phage-mediated intergeneric transfer of toxin genes. Science 323:139-141.
    • (2009) Science , vol.323 , pp. 139-141
    • Chen, J.1    Novick, R.P.2
  • 20
    • 33646786106 scopus 로고    scopus 로고
    • Cooper, J. E., and E. J. Feil. 2006. The phylogeny of Staphylococcus aureus: which genes make the best intra-species markers? Microbiology 152:1297-1305.
    • (2006) , vol.152 , pp. 1297-1305
    • Cooper, J.E.1    Feil, E.J.2    Feil Microbiology3
  • 21
    • 16644395866 scopus 로고    scopus 로고
    • Does a tree-like phylogeny only exist at the tips in the prokaryotes? Proc
    • Creevey, C. J., et al. 2004. Does a tree-like phylogeny only exist at the tips in the prokaryotes? Proc. R. Soc. Lond. B Biol. Sci. 271:2551-2558.
    • (2004) R. Soc. Lond. B Biol. Sci. , vol.271 , pp. 2551-2558
    • Creevey, C.J.1
  • 22
    • 77957980707 scopus 로고    scopus 로고
    • Origins and evolution of antibiotic resistance
    • Davies, J., and D. Davies. 2010. Origins and evolution of antibiotic resistance. Microbiol. Mol. Biol. Rev. 74:417-433.
    • (2010) Microbiol. Mol. Biol. Rev. , vol.74 , pp. 417-433
    • Davies, J.1    Davies, D.2
  • 23
    • 61849106980 scopus 로고    scopus 로고
    • Vancomycin heteroresistance and methicillin-resistant Staphylococcus aureus
    • Deresinski, S. 2009. Vancomycin heteroresistance and methicillin-resistant Staphylococcus aureus. J. Infect. Dis. 199:605-609.
    • (2009) J. Infect. Dis. , vol.199 , pp. 605-609
    • Deresinski, S.1
  • 24
    • 33644659999 scopus 로고    scopus 로고
    • Complete genome sequence of USA300, an epidemic clone of community-acquired meticillin-resistant Staphylococcus aureus
    • Diep, B. A., et al. 2006. Complete genome sequence of USA300, an epidemic clone of community-acquired meticillin-resistant Staphylococcus aureus. Lancet 367:731-739.
    • (2006) Lancet , vol.367 , pp. 731-739
    • Diep, B.A.1
  • 25
    • 65249145128 scopus 로고    scopus 로고
    • Regulation of the mazEF toxinantitoxin module in Staphylococcus aureus and its impact on sigB expression
    • Donegan, N. P., and A. L. Cheung. 2009. Regulation of the mazEF toxinantitoxin module in Staphylococcus aureus and its impact on sigB expression. J. Bacteriol. 191:2795-2805.
    • (2009) J. Bacteriol. , vol.191 , pp. 2795-2805
    • Donegan, N.P.1    Cheung, A.L.2
  • 26
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar, R. C. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 27
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for large-scale detection of protein families
    • Enright, A. J., S. Van Dongen, and C. A. Ouzounis. 2002. An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res. 30:1575-1584.
    • (2002) Nucleic Acids Res , vol.30 , pp. 1575-1584
    • Enright, A.J.1    Van Dongen, S.2    Ouzounis, C.A.3
  • 28
    • 0037853350 scopus 로고    scopus 로고
    • How clonal is Staphylococcus aureus?
    • Feil, E. J., et al. 2003. How clonal is Staphylococcus aureus? J. Bacteriol. 185:3307-3316.
    • (2003) J Bacteriol , vol.185 , pp. 3307-3316
    • Feil, E.J.1
  • 29
    • 1342304133 scopus 로고    scopus 로고
    • eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
    • Feil, E. J., B. C. Li, D. M. Aanensen, W. P. Hanage, and B. G. Spratt. 2004. eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J. Bacteriol. 186:1518-1530.
    • (2004) J. Bacteriol. , vol.186 , pp. 1518-1530
    • Feil, E.J.1    Li, B.C.2    Aanensen, D.M.3    Hanage, W.P.4    Spratt, B.G.5
  • 30
    • 0034769889 scopus 로고    scopus 로고
    • Recombination and the population structures of bacterial pathogens
    • Feil, E. J., and B. G. Spratt. 2001. Recombination and the population structures of bacterial pathogens. Annu. Rev. Microbiol. 55:561-590.
    • (2001) Annu. Rev. Microbiol. , vol.55 , pp. 561-590
    • Feil, E.J.1    Spratt, B.G.2
  • 31
    • 37349048926 scopus 로고    scopus 로고
    • Evolution and pathogenesis of Staphylococcus aureus: lessons learned from genotyping and comparative genomics
    • Feng, Y., et al. 2008. Evolution and pathogenesis of Staphylococcus aureus: lessons learned from genotyping and comparative genomics. FEMS Microbiol. Rev. 32:23-37.
    • (2008) FEMS Microbiol. Rev. , vol.32 , pp. 23-37
    • Feng, Y.1
  • 32
    • 33644876020 scopus 로고    scopus 로고
    • Pfam: clans, web tools, and services
    • Finn, R. D., et al. 2006. Pfam: clans, web tools, and services. Nucleic Acids Res. 34:D247-D251.
    • (2006) Nucleic Acids Res , vol.34
    • Finn, R.D.1
  • 33
    • 0034178257 scopus 로고    scopus 로고
    • Homology: a personal view on some of the problems
    • Fitch, W. M. 2000. Homology: a personal view on some of the problems. Trends Genet. 16:227-231.
    • (2000) Trends Genet , vol.16 , pp. 227-231
    • Fitch, W.M.1
  • 34
    • 61349125447 scopus 로고    scopus 로고
    • Lines of evidence for horizontal gene transfer of a phenazine producing operon into multiple bacterial species
    • Fitzpatrick, D. A. 2009. Lines of evidence for horizontal gene transfer of a phenazine producing operon into multiple bacterial species. J. Mol. Evol. 68:171-185.
    • (2009) J. Mol. Evol. , vol.68 , pp. 171-185
    • Fitzpatrick, D.A.1
  • 35
    • 64049118002 scopus 로고    scopus 로고
    • Overexpression of MazF in Staphylococcus aureus induces bacteriostasis by selectively targeting mRNAs for cleavage
    • Fu, Z., S. Tamber, G. Memmi, N. P. Donegan, and A. L. Cheung. 2009. Overexpression of MazF in Staphylococcus aureus induces bacteriostasis by selectively targeting mRNAs for cleavage. J. Bacteriol. 191:2051-2059.
    • (2009) J. Bacteriol. , vol.191 , pp. 2051-2059
    • Fu, Z.1    Tamber, S.2    Memmi, G.3    Donegan, N.P.4    Cheung, A.L.5
  • 36
    • 20144372744 scopus 로고    scopus 로고
    • Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain
    • Gill, S. R., et al. 2005. Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain. J. Bacteriol. 187:2426-2438.
    • (2005) J. Bacteriol. , vol.187 , pp. 2426-2438
    • Gill, S.R.1
  • 37
    • 0034351387 scopus 로고    scopus 로고
    • Likelihood-based tests of topologies in phylogenetics
    • Goldman, N., J. P. Anderson, and A. G. Rodrigo. 2000. Likelihood-based tests of topologies in phylogenetics. Syst. Biol. 49:652-670.
    • (2000) Syst. Biol. , vol.49 , pp. 652-670
    • Goldman, N.1    Anderson, J.P.2    Rodrigo, A.G.3
  • 38
    • 45549089420 scopus 로고    scopus 로고
    • High-throughput functional annotation and data mining with the Blast2GO suite
    • Götz, S., et al. 2008. High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Res. 36:3420-3435.
    • (2008) Nucleic Acids Res , vol.36 , pp. 3420-3435
    • Götz, S.1
  • 39
    • 0021003190 scopus 로고
    • Evolution of antibiotic resistance genes: the DNA sequence of a kanamycin resistance gene from Staphylococcus aureus
    • Gray, G. S., and W. M. Fitch. 1983. Evolution of antibiotic resistance genes: the DNA sequence of a kanamycin resistance gene from Staphylococcus aureus. Mol. Biol. Evol. 1:57-66.
    • (1983) Mol. Biol. Evol. , vol.1 , pp. 57-66
    • Gray, G.S.1    Fitch, W.M.2
  • 40
    • 2942513067 scopus 로고    scopus 로고
    • A hybrid clustering approach to recognition of protein families in 114 microbial genomes
    • Harlow, T. J., J. P. Gogarten, and M. A. Ragan. 2004. A hybrid clustering approach to recognition of protein families in 114 microbial genomes. BMC Bioinform. 5:45.
    • (2004) BMC Bioinform , vol.5 , pp. 45
    • Harlow, T.J.1    Gogarten, J.P.2    Ragan, M.A.3
  • 41
    • 0027030863 scopus 로고
    • Nonautonomous transposable elements in prokaryotes and eukaryotes
    • Hartl, D. L., E. R. Lozovskaya, and J. G. Lawrence. 1992. Nonautonomous transposable elements in prokaryotes and eukaryotes. Genetica 86:47-53.
    • (1992) Genetica , vol.86 , pp. 47-53
    • Hartl, D.L.1    Lozovskaya, E.R.2    Lawrence, J.G.3
  • 42
    • 0036084391 scopus 로고    scopus 로고
    • Genome sequence survey identifies unique sequences and key virulence genes with unusual rates of amino acid substitution in bovine Staphylococcus aureus
    • Herron, L. L., et al. 2002. Genome sequence survey identifies unique sequences and key virulence genes with unusual rates of amino acid substitution in bovine Staphylococcus aureus. Infect. Immun. 70:3978-3981.
    • (2002) Infect. Immun. , vol.70 , pp. 3978-3981
    • Herron, L.L.1
  • 43
    • 0026621245 scopus 로고
    • ABC transporters: from microorganisms to man
    • Higgins, C. F. 1992. ABC transporters: from microorganisms to man. Annu. Rev. Cell Biol. 8:67-113.
    • (1992) Annu. Rev. Cell Biol. , vol.8 , pp. 67-113
    • Higgins, C.F.1
  • 44
    • 9644268285 scopus 로고    scopus 로고
    • Genetic characterization of methicillin-resistant Staphylococcus aureus
    • Hiramatsu, K., S. Watanabe, F. Takeuchi, T. Ito, and T. Baba. 2004. Genetic characterization of methicillin-resistant Staphylococcus aureus. Vaccine 22:S5-S8.
    • (2004) Vaccine , vol.22
    • Hiramatsu, K.1    Watanabe, S.2    Takeuchi, F.3    Ito, T.4    Baba, T.5
  • 45
    • 3042718925 scopus 로고    scopus 로고
    • Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance
    • Holden, M. T., et al. 2004. Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance. Proc. Natl. Acad. Sci. U. S. A. 101:9786-9791.
    • (2004) Proc. Natl. Acad. Sci. U. S. A. , vol.101 , pp. 9786-9791
    • Holden, M.T.1
  • 46
    • 0642344263 scopus 로고    scopus 로고
    • Duplication is more common among laterally transferred genes than among indigenous genes
    • Hooper, S. D., and O. G. Berg. 2003. Duplication is more common among laterally transferred genes than among indigenous genes. Genome Biol. 4:R48.
    • (2003) Genome Biol , vol.4
    • Hooper, S.D.1    Berg, O.G.2
  • 47
    • 0036572959 scopus 로고    scopus 로고
    • Comparative analysis of the genomes of the temperate bacteriophages phi 11, phi 12, and phi 13 of Staphylococcus aureus 8325
    • Iandolo, J. J., et al. 2002. Comparative analysis of the genomes of the temperate bacteriophages phi 11, phi 12, and phi 13 of Staphylococcus aureus 8325. Gene 289:109-118.
    • (2002) Gene , vol.289 , pp. 109-118
    • Iandolo, J.J.1
  • 48
    • 0035045707 scopus 로고    scopus 로고
    • Horizontal transfer of the photosynthesis gene cluster and operon rearrangement in purple bacteria
    • Igarashi, N., et al. 2001. Horizontal transfer of the photosynthesis gene cluster and operon rearrangement in purple bacteria. J. Mol. Evol. 52:333-341.
    • (2001) J. Mol. Evol. , vol.52 , pp. 333-341
    • Igarashi, N.1
  • 49
    • 33645214579 scopus 로고    scopus 로고
    • Recombination between elongation factor 1-alpha genes from distantly related archaeal lineages
    • Inagaki, Y., E. Susko, and A. J. Roger. 2006. Recombination between elongation factor 1-alpha genes from distantly related archaeal lineages. Proc. Natl. Acad. Sci. U. S. A. 103:4528-4533.
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , pp. 4528-4533
    • Inagaki, Y.1    Susko, E.2    Roger, A.J.3
  • 50
    • 0033000397 scopus 로고    scopus 로고
    • Cloning and nucleotide sequence determination of the entire mec DNA of pre-methicillin-resistant Staphylococcus aureus N315
    • Ito, T., Y. Katayama, and K. Hiramatsu. 1999. Cloning and nucleotide sequence determination of the entire mec DNA of pre-methicillin-resistant Staphylococcus aureus N315. Antimicrob. Agents Chemother. 43:1449-1458.
    • (1999) Antimicrob. Agents Chemother. , vol.43 , pp. 1449-1458
    • Ito, T.1    Katayama, Y.2    Hiramatsu, K.3
  • 51
    • 0033616714 scopus 로고    scopus 로고
    • Horizontal gene transfer among genomes: the complexity hypothesis
    • Jain, R., M. C. Rivera, and J. A. Lake. 1999. Horizontal gene transfer among genomes: the complexity hypothesis. Proc. Natl. Acad. Sci. U. S. A. 96:3801-3806.
    • (1999) Proc. Natl. Acad. Sci. U. S. A. , vol.96 , pp. 3801-3806
    • Jain, R.1    Rivera, M.C.2    Lake, J.A.3
  • 52
    • 0029963710 scopus 로고    scopus 로고
    • A program for calculating and dis-playing compatibility matrices as an aid in determining reticulate evolution in molecular sequences
    • Jakobsen, I. B., and S. Easteal. 1996. A program for calculating and dis-playing compatibility matrices as an aid in determining reticulate evolution in molecular sequences. Comput. Appl. Biosci. 12:291-295.
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 291-295
    • Jakobsen, I.B.1    Easteal, S.2
  • 54
    • 0037738520 scopus 로고    scopus 로고
    • Crystal structure of the MazE/MazF complex: molecular bases of antidote-toxin recognition
    • Kamada, K., F. Hanaoka, and S. K. Burley. 2003. Crystal structure of the MazE/MazF complex: molecular bases of antidote-toxin recognition. Mol. Cell 11:875-884.
    • (2003) Mol. Cell , vol.11 , pp. 875-884
    • Kamada, K.1    Hanaoka, F.2    Burley, S.K.3
  • 55
    • 77954874400 scopus 로고    scopus 로고
    • Management of Staphylococcus aureus bacteremia and endocarditis: progresses and challenges
    • Kern, W. V. 2010. Management of Staphylococcus aureus bacteremia and endocarditis: progresses and challenges. Curr. Opin. Infect. Dis. 23:346-358.
    • (2010) Curr. Opin. Infect. Dis. , vol.23 , pp. 346-358
    • Kern, W.V.1
  • 56
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 57
    • 0024307824 scopus 로고
    • Evaluation of the maximum-likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
    • Kishino, H., and M. Hasegawa. 1989. Evaluation of the maximum-likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J. Mol. Evol. 29:170-179.
    • (1989) J. Mol. Evol. , vol.29 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 58
    • 27644472372 scopus 로고    scopus 로고
    • Orthologs, paralogs, and evolutionary genomics
    • Koonin, E. V. 2005. Orthologs, paralogs, and evolutionary genomics. Annu. Rev. Genet. 39:309-338.
    • (2005) Annu. Rev. Genet. , vol.39 , pp. 309-338
    • Koonin, E.V.1
  • 59
    • 70449503880 scopus 로고    scopus 로고
    • The fundamental units, processes and patterns of evolution, and the tree of life conundrum
    • Koonin, E. V., and Y. I. Wolf. 2009. The fundamental units, processes and patterns of evolution, and the tree of life conundrum. Biol. Direct 4:33.
    • (2009) Biol. Direct , vol.4 , pp. 33
    • Koonin, E.V.1    Wolf, Y.I.2
  • 60
    • 0035925904 scopus 로고    scopus 로고
    • Whole genome sequencing of meticillin-resistant Staphylococcus aureus
    • Kuroda, M., et al. 2001. Whole genome sequencing of meticillin-resistant Staphylococcus aureus. Lancet 357:1225-1240.
    • (2001) Lancet , vol.357 , pp. 1225-1240
    • Kuroda, M.1
  • 61
    • 24944592355 scopus 로고    scopus 로고
    • Whole genome sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urinary tract infection
    • Kuroda, M., et al. 2005. Whole genome sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urinary tract infection. Proc. Natl. Acad. Sci. U. S. A. 102:13272-13277.
    • (2005) Proc. Natl. Acad. Sci. U. S. A. , vol.102 , pp. 13272-13277
    • Kuroda, M.1
  • 62
    • 0019166528 scopus 로고
    • Evidence for two mechanisms of plasmid transfer in mixed cultures of Staphylococcus aureus
    • Lacey, R. W. 1980. Evidence for two mechanisms of plasmid transfer in mixed cultures of Staphylococcus aureus. J. Gen. Microbiol. 119:423-435.
    • (1980) J. Gen. Microbiol. , vol.119 , pp. 423-435
    • Lacey, R.W.1
  • 63
    • 77958479691 scopus 로고    scopus 로고
    • Evolutionary dynamics of complete Campylobacter pan-genomes and the bacterial species concept
    • Lefébure, T., P. D. Bitar, H. Suzuki, and M. J. Stanhope. 2010. Evolutionary dynamics of complete Campylobacter pan-genomes and the bacterial species concept. Genome Biol. Evol. 2:646-655.
    • (2010) Genome Biol. Evol. , vol.2 , pp. 646-655
    • Lefébure, T.1    Bitar, P.D.2    Suzuki, H.3    Stanhope, M.J.4
  • 64
    • 21844434913 scopus 로고    scopus 로고
    • Evolutionary origins of genomic repertoires in bacteria
    • Lerat, E., V. Daubin, H. Ochman, and N. A. Moran. 2005. Evolutionary origins of genomic repertoires in bacteria. PLoS Biol. 3:e130.
    • (2005) PLoS Biol , vol.3
    • Lerat, E.1    Daubin, V.2    Ochman, H.3    Moran, N.A.4
  • 65
    • 73649093750 scopus 로고    scopus 로고
    • Genomic variation and evolution of Staphylococcus aureus
    • Lindsay, J. A. 2010. Genomic variation and evolution of Staphylococcus aureus. Int. J. Med. Microbiol. 300:98-103.
    • (2010) Int. J. Med. Microbiol. , vol.300 , pp. 98-103
    • Lindsay, J.A.1
  • 66
    • 3342960836 scopus 로고    scopus 로고
    • Staphylococcus aureus: superbug, super genome?
    • Lindsay, J. A., and M. T. G. Holden. 2004. Staphylococcus aureus: superbug, super genome? Trends Microbiol. 12:378-385.
    • (2004) Trends Microbiol , vol.12 , pp. 378-385
    • Lindsay, J.A.1    Holden, M.T.G.2
  • 67
    • 0032551901 scopus 로고    scopus 로고
    • Staphylococcus aureus infections
    • Lowy, F. D. 1998. Staphylococcus aureus infections. N. Engl. J. Med. 339: 520-532.
    • (1998) N. Engl. J. Med. , vol.339 , pp. 520-532
    • Lowy, F.D.1
  • 68
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch, M., and J. S. Conery. 2000. The evolutionary fate and consequences of duplicate genes. Science 290:1151-1155.
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 69
    • 77956631203 scopus 로고    scopus 로고
    • Mobile genetic elements of Staphylococcus aureus
    • Malachowa, N., and F. R. DeLeo. 2010. Mobile genetic elements of Staphylococcus aureus. Cell. Mol. Life Sci. 67:3057-3071.
    • (2010) Cell. Mol. Life Sci. , vol.67 , pp. 3057-3071
    • Malachowa, N.1    DeLeo, F.R.2
  • 70
    • 84941871856 scopus 로고
    • The Kolmogorov-Smirnov test for goodness of fit
    • Massey, F. J. 1951. The Kolmogorov-Smirnov test for goodness of fit. J. Am. Stat. Assoc. 46:68-78.
    • (1951) J. Am. Stat. Assoc. , vol.46 , pp. 68-78
    • Massey, F.J.1
  • 71
    • 0026708873 scopus 로고
    • Analyzing the mosaic structure of genes
    • Maynard Smith, J. 1992. Analyzing the mosaic structure of genes. J. Mol. Evol. 34:126-129.
    • (1992) J. Mol. Evol. , vol.34 , pp. 126-129
    • Smith, J.M.1
  • 72
    • 21444455535 scopus 로고    scopus 로고
    • Dual multiple change-point model leads to more accurate recombination detection
    • Minin, V. N., K. S. Dorman, F. Fang, and M. A. Suchard. 2005. Dual multiple change-point model leads to more accurate recombination detection. Bioinformatics 21:3034-3042.
    • (2005) Bioinformatics , vol.21 , pp. 3034-3042
    • Minin, V.N.1    Dorman, K.S.2    Fang, F.3    Suchard, M.A.4
  • 73
    • 49249110510 scopus 로고    scopus 로고
    • Ectopic gene conversions in bacterial genomes
    • Morris, R. T., and G. Drouin. 2007. Ectopic gene conversions in bacterial genomes. Genome 50:975-984.
    • (2007) Genome , vol.50 , pp. 975-984
    • Morris, R.T.1    Drouin, G.2
  • 74
    • 78049503260 scopus 로고    scopus 로고
    • Propionibacterium acnes and Staphylococcus epidermidis isolated from refractory endodontic lesions are opportunistic pathogens
    • Niazi, S. A., et al. 2010. Propionibacterium acnes and Staphylococcus epidermidis isolated from refractory endodontic lesions are opportunistic pathogens. J. Clin. Microbiol. 48:3859-3869.
    • (2010) J. Clin. Microbiol. , vol.48 , pp. 3859-3869
    • Niazi, S.A.1
  • 75
    • 64049094506 scopus 로고    scopus 로고
    • Aphids acquired symbiotic genes via lateral gene transfer
    • Nikoh, N., and A. Nakabachi. 2009. Aphids acquired symbiotic genes via lateral gene transfer. BMC Biol. 7:12.
    • (2009) BMC Biol , vol.7 , pp. 12
    • Nikoh, N.1    Nakabachi, A.2
  • 76
    • 33646468361 scopus 로고    scopus 로고
    • Reducing the fitness cost of antibiotic resistance by amplification of initiator tRNA genes
    • Nilsson, A. I., et al. 2006. Reducing the fitness cost of antibiotic resistance by amplification of initiator tRNA genes. Proc. Natl. Acad. Sci. U. S. A. 103:6976-6981.
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , pp. 6976-6981
    • Nilsson, A.I.1
  • 77
    • 42049122122 scopus 로고    scopus 로고
    • Spontaneous deletion of the methicillin resistance determinant, mecA, partially compensates for the fitness cost associated with high-level vancomycin resistance in Staphylococcus aureus
    • Noto, M. J., P. M. Fox, and G. L. Archer. 2008. Spontaneous deletion of the methicillin resistance determinant, mecA, partially compensates for the fitness cost associated with high-level vancomycin resistance in Staphylococcus aureus. Antimicrob. Agents Chemother. 52:1221-1229.
    • (2008) Antimicrob. Agents Chemother. , vol.52 , pp. 1221-1229
    • Noto, M.J.1    Fox, P.M.2    Archer, G.L.3
  • 78
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: a novel method for fast and accurate multiple sequence alignment
    • Notredame, C., D. G. Higgins, and J. Heringa. 2000. T-Coffee: a novel method for fast and accurate multiple sequence alignment. J. Mol. Biol. 302:205-217.
    • (2000) J. Mol. Biol. , vol.302 , pp. 205-217
    • Notredame, C.1    Higgins, D.G.2    Heringa, J.3
  • 79
    • 77953478153 scopus 로고    scopus 로고
    • The phage-related chromosomal islands of Gram-positive bacteria
    • Novick, R. P., G. E. Christie, and J. R. Penades. 2010. The phage-related chromosomal islands of Gram-positive bacteria. Nat. Rev. Microbiol. 8:541-551.
    • (2010) Nat. Rev. Microbiol. , vol.8 , pp. 541-551
    • Novick, R.P.1    Christie, G.E.2    Penades, J.R.3
  • 80
    • 34249718889 scopus 로고    scopus 로고
    • The SaPIs: mobile pathogenicity islands of Staphylococcus
    • Novick, R. P., and A. Subedi. 2007. The SaPIs: mobile pathogenicity islands of Staphylococcus. Chem. Immunol. Allergy 93:42-57.
    • (2007) Chem. Immunol. Allergy , vol.93 , pp. 42-57
    • Novick, R.P.1    Subedi, A.2
  • 81
    • 0642312313 scopus 로고    scopus 로고
    • Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ
    • Omelchenko, M. V., K. S. Makarova, Y. I. Wolf, I. B. Rogozin, and E. V. Koonin. 2003. Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ. Genome Biol. 4:55.
    • (2003) Genome Biol , vol.4 , pp. 55
    • Omelchenko, M.V.1    Makarova, K.S.2    Wolf, Y.I.3    Rogozin, I.B.4    Koonin, E.V.5
  • 82
    • 67651246873 scopus 로고    scopus 로고
    • Staphylococcus epidermidis: the "accidental" pathogen
    • Otto, M. 2009. Staphylococcus epidermidis: the "accidental" pathogen. Nat. Rev. Microbiol. 7:555-567.
    • (2009) Nat. Rev. Microbiol. , vol.7 , pp. 555-567
    • Otto, M.1
  • 83
    • 77957787864 scopus 로고    scopus 로고
    • Horizontal gene transfer and the genomics of enterococcal antibiotic resistance
    • Palmer, K. L., V. N. Kos, and M. S. Gilmore. 2010. Horizontal gene transfer and the genomics of enterococcal antibiotic resistance. Curr. Opin. Microbiol. 13:632-639.
    • (2010) Curr. Opin. Microbiol. , vol.13 , pp. 632-639
    • Palmer, K.L.1    Kos, V.N.2    Gilmore, M.S.3
  • 84
    • 70350292185 scopus 로고    scopus 로고
    • VanA-type vancomycin-resistant Staphylococcus aureus
    • Périchon, B., and P. Courvalin. 2009. VanA-type vancomycin-resistant Staphylococcus aureus. Antimicrob. Agents Chemother. 53:4580-4587.
    • (2009) Antimicrob. Agents Chemother. , vol.53 , pp. 4580-4587
    • Périchon, B.1    Courvalin, P.2
  • 85
    • 79952201675 scopus 로고    scopus 로고
    • The tree and net components of prokaryote evolution
    • Puigbo, P., Y. I. Wolf, and E. V. Koonin. 2010. The tree and net components of prokaryote evolution. Genome Biol. Evol. 2:745-756.
    • (2010) Genome Biol. Evol. , vol.2 , pp. 745-756
    • Puigbo, P.1    Wolf, Y.I.2    Koonin, E.V.3
  • 86
    • 70049101505 scopus 로고    scopus 로고
    • Mobile genetic element-encoded cytolysin connects virulence to methicillin resistance in MRSA
    • Queck, S. Y., et al. 2009. Mobile genetic element-encoded cytolysin connects virulence to methicillin resistance in MRSA. PLoS Pathog. 5:e1000533.
    • (2009) PLoS Pathog , vol.5
    • Queck, S.Y.1
  • 87
    • 0026822436 scopus 로고
    • Phylogenetic inference based on matrix representation of trees
    • Ragan, M. A. 1992. Phylogenetic inference based on matrix representation of trees. Mol. Phylogenet. Evol. 1:53-58.
    • (1992) Mol. Phylogenet. Evol. , vol.1 , pp. 53-58
    • Ragan, M.A.1
  • 89
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist, F., and J. P. Huelsenbeck. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 90
    • 0028104094 scopus 로고
    • The bacterial phosphotransferase system: new frontiers 30 years later
    • Saier, M. H., Jr., and J. Reizer. 1994. The bacterial phosphotransferase system: new frontiers 30 years later. Mol. Microbiol. 13:755-764.
    • (1994) Mol. Microbiol. , vol.13 , pp. 755-764
    • Saier Jr., M.H.1    Reizer, J.2
  • 91
    • 67651204792 scopus 로고    scopus 로고
    • Bacterial gene amplification: implications for the evolution of antibiotic resistance
    • Sandegren, L., and D. I. Andersson. 2009. Bacterial gene amplification: implications for the evolution of antibiotic resistance. Nat. Rev. Microbiol. 7:578-588.
    • (2009) Nat. Rev. Microbiol. , vol.7 , pp. 578-588
    • Sandegren, L.1    Andersson, D.I.2
  • 92
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: maximum-likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt, H. A., K. Strimmer, M. Vingron, and A. von Haeseler. 2002. TREE-PUZZLE: maximum-likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18:502-504.
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    von Haeseler, A.4
  • 93
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of loglikelihoods with applications to phylogenetic inference
    • Shimodaira, H., and M. Hasegawa. 1999. Multiple comparisons of loglikelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16:1114-1116.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 94
    • 58149189968 scopus 로고    scopus 로고
    • Staphylococcal infections: a historical perspective
    • Shinefield, H. R., and N. L. Ruff. 2009. Staphylococcal infections: a historical perspective. Infect. Dis. Clin. N. Am. 23:1-15.
    • (2009) Infect. Dis. Clin. N. Am. , vol.23 , pp. 1-15
    • Shinefield, H.R.1    Ruff, N.L.2
  • 95
    • 79960313230 scopus 로고    scopus 로고
    • Lateral genetic transfer and the construction of genetic exchange communities
    • in press. doi: 10.1111/j.1574-6976.2010.00261.x
    • Skippington, E., and M. A. Ragan. Lateral genetic transfer and the construction of genetic exchange communities. FEMS Microbiol. Rev., in press. doi:10.1111/j.1574-6976.2010.00261.x.
    • FEMS Microbiol. Rev
    • Skippington, E.1    Ragan, M.A.2
  • 96
    • 0025088197 scopus 로고
    • Chromosomal gene transfer during conjugation by Staphylococcus aureus is mediated by transposon-facilitated mobilization
    • Stout, V. G., and J. J. Iandolo. 1990. Chromosomal gene transfer during conjugation by Staphylococcus aureus is mediated by transposon-facilitated mobilization. J. Bacteriol. 172:6148-6150.
    • (1990) J. Bacteriol. , vol.172 , pp. 6148-6150
    • Stout, V.G.1    Iandolo, J.J.2
  • 97
    • 41049111540 scopus 로고    scopus 로고
    • Inferring confidence sets of possibly misspecified gene trees
    • Strimmer, K., and A. Rambaut. 2002. Inferring confidence sets of possibly misspecified gene trees. Proc. R. Soc. Lond. B Biol. Sci. 269:137-142.
    • (2002) Proc. R. Soc. Lond. B Biol. Sci. , vol.269 , pp. 137-142
    • Strimmer, K.1    Rambaut, A.2
  • 99
    • 0032947008 scopus 로고    scopus 로고
    • Phylogenetic relationships of 38 taxa of the genus Staphylococcus based on 16S rRNA gene sequence analysis
    • Takahashi, T., I. Satoh, and N. Kikuchi. 1999. Phylogenetic relationships of 38 taxa of the genus Staphylococcus based on 16S rRNA gene sequence analysis. Int. J. Syst. Bacteriol. 49:725-728.
    • (1999) Int. J. Syst. Bacteriol. , vol.49 , pp. 725-728
    • Takahashi, T.1    Satoh, I.2    Kikuchi, N.3
  • 100
    • 27144471058 scopus 로고    scopus 로고
    • Whole-genome sequencing of Staphylococcus haemolyticus uncovers the extreme plasticity of its genome and the evolution of human-colonizing staphylococcal species
    • Takeuchi, F., et al. 2005. Whole-genome sequencing of Staphylococcus haemolyticus uncovers the extreme plasticity of its genome and the evolution of human-colonizing staphylococcal species. J. Bacteriol. 187:7292-7308.
    • (2005) J. Bacteriol. , vol.187 , pp. 7292-7308
    • Takeuchi, F.1
  • 101
    • 63449102873 scopus 로고    scopus 로고
    • Bacterial toxin-antitoxin systems: more than selfish entities?
    • Van Melderen, L., and M. Saavedra De Bast. 2009. Bacterial toxin-antitoxin systems: more than selfish entities? PLoS Genet. 5:e1000437.
    • (2009) PLoS Genet , vol.5
    • Van Melderen, L.1    Saavedra De Bast, M.2
  • 102
    • 79955485916 scopus 로고    scopus 로고
    • Revisiting methicillin-resistant Staphylococcus aureus infections
    • Waness, A. 2010. Revisiting methicillin-resistant Staphylococcus aureus infections. J. Glob. Infect. Dis. 2:49-56.
    • (2010) J. Glob. Infect. Dis. , vol.2 , pp. 49-56
    • Waness, A.1
  • 103
    • 0034682457 scopus 로고    scopus 로고
    • Interpreting the universal phylogenetic tree
    • Woese, C. R. 2000. Interpreting the universal phylogenetic tree. Proc. Natl. Acad. Sci. U. S. A. 97:8392-8396.
    • (2000) Proc. Natl. Acad. Sci. U. S. A. , vol.97 , pp. 8392-8396
    • Woese, C.R.1
  • 104
    • 58449090122 scopus 로고    scopus 로고
    • An ancient horizontal gene transfer between mosquito and the endosymbiotic bacterium Wolbachia pipientis
    • Woolfit, M., I. Iturbe-Ormaetxe, E. A. McGraw, and S. L. O'Neill. 2009. An ancient horizontal gene transfer between mosquito and the endosymbiotic bacterium Wolbachia pipientis. Mol. Biol. Evol. 26:367-374.
    • (2009) Mol. Biol. Evol. , vol.26 , pp. 367-374
    • Woolfit, M.1    Iturbe-Ormaetxe, I.2    McGraw, E.A.3    O'Neill, S.L.4
  • 105
    • 77957820588 scopus 로고    scopus 로고
    • Antibiotic resistance in the environment: a link to the clinic?
    • Wright, G. D. 2010. Antibiotic resistance in the environment: a link to the clinic? Curr. Opin. Microbiol. 13:589-594.
    • (2010) Curr. Opin. Microbiol. , vol.13 , pp. 589-594
    • Wright, G.D.1
  • 106
    • 0028064845 scopus 로고
    • Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods
    • Yang, Z. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J. Mol. Evol. 39:306-314.
    • (1994) J. Mol. Evol. , vol.39 , pp. 306-314
    • Yang, Z.1
  • 107
    • 0141454848 scopus 로고    scopus 로고
    • Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228)
    • Zhang, Y. Q., et al. 2003. Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228). Mol. Microbiol. 49:1577-1593.
    • (2003) Mol. Microbiol. , vol.49 , pp. 1577-1593
    • Zhang, Y.Q.1
  • 108
    • 33748277982 scopus 로고    scopus 로고
    • Phylogenetic analyses of cyanobacterial genomes: quantification of horizontal gene transfer events
    • Zhaxybayeva, O., J. P. Gogarten, R. L. Charlebois, W. F. Doolittle, and R. T. Papke. 2006. Phylogenetic analyses of cyanobacterial genomes: quantification of horizontal gene transfer events. Genome Res. 16:1099-1108.
    • (2006) Genome Res , vol.16 , pp. 1099-1108
    • Zhaxybayeva, O.1    Gogarten, J.P.2    Charlebois, R.L.3    Doolittle, W.F.4    Papke, R.T.5


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