-
1
-
-
84870214514
-
Chromosome replication and segregation in bacteria
-
Reyes-Lamothe, R., Nicolas, E. and Sherratt, D.J. (2012) Chromosome replication and segregation in bacteria. Annu. Rev. Genet., 46, 121-143.
-
(2012)
Annu. Rev. Genet.
, vol.46
, pp. 121-143
-
-
Reyes-Lamothe, R.1
Nicolas, E.2
Sherratt, D.J.3
-
2
-
-
42749085185
-
Escherichia coli and its chromosome
-
Reyes-Lamothe, R., Wang, X. and Sherratt, D. (2008) Escherichia coli and its chromosome. Trends Microbiol., 16, 238-245.
-
(2008)
Trends Microbiol.
, vol.16
, pp. 238-245
-
-
Reyes-Lamothe, R.1
Wang, X.2
Sherratt, D.3
-
4
-
-
0036843139
-
The bacterial replication initiator DnaA. DnaA and oriC, the bacterial mode to initiate DNA replication
-
Messer, W. (2002) The bacterial replication initiator DnaA. DnaA and oriC, the bacterial mode to initiate DNA replication. FEMS Microbiol. Rev., 26, 355-374.
-
(2002)
FEMS Microbiol. Rev.
, vol.26
, pp. 355-374
-
-
Messer, W.1
-
5
-
-
0032489041
-
Polymerases and the replisome: Machines within machines
-
Baker, T.A. and Bell, S.P. (1998) Polymerases and the replisome: machines within machines. Cell, 92, 295-305.
-
(1998)
Cell
, vol.92
, pp. 295-305
-
-
Baker, T.A.1
Bell, S.P.2
-
6
-
-
56749098227
-
The replication fork trap and termination of chromosome replication
-
Duggin, I.G., Wake, R.G., Bell, S.D. and Hill, T.M. (2008) The replication fork trap and termination of chromosome replication. Mol. Microbiol., 70, 1323-1333.
-
(2008)
Mol. Microbiol.
, vol.70
, pp. 1323-1333
-
-
Duggin, I.G.1
Wake, R.G.2
Bell, S.D.3
Hill, T.M.4
-
7
-
-
24944550999
-
Replication termination in Escherichia coli: Structure and antihelicase activity of the tus-ter complex
-
Neylon, C., Kralicek, A.V., Hill, T.M. and Dixon, N.E. (2005) Replication termination in Escherichia coli: structure and antihelicase activity of the Tus-Ter complex. Microbiol. Mol. Biol. Rev. MMBR, 69, 501-526.
-
(2005)
Microbiol. Mol. Biol. Rev. MMBR
, vol.69
, pp. 501-526
-
-
Neylon, C.1
Kralicek, A.V.2
Hill, T.M.3
Dixon, N.E.4
-
8
-
-
0028227702
-
The RNA chain elongation rate in Escherichia coli depends on the growth rate
-
Vogel, U. and Jensen, K.F. (1994) The RNA chain elongation rate in Escherichia coli depends on the growth rate. J. Bacteriol., 176, 2807-2813.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 2807-2813
-
-
Vogel, U.1
Jensen, K.F.2
-
9
-
-
66149088099
-
Varying rate of RNA chain elongation during rrn transcription in Escherichia coli
-
Dennis, P.P., Ehrenberg, M., Fange, D. and Bremer, H. (2009) Varying rate of RNA chain elongation during rrn transcription in Escherichia coli. J. Bacteriol., 191, 3740-3746.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 3740-3746
-
-
Dennis, P.P.1
Ehrenberg, M.2
Fange, D.3
Bremer, H.4
-
10
-
-
0024276903
-
When polymerases collide: Replication and the transcriptional organization of the E. Coli chromosome
-
Brewer, B.J. (1988) When polymerases collide: replication and the transcriptional organization of the E. coli chromosome. Cell, 53, 679-686.
-
(1988)
Cell
, vol.53
, pp. 679-686
-
-
Brewer, B.J.1
-
11
-
-
0032417093
-
Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes
-
McLean, M.J., Wolfe, K.H. and Devine, K.M. (1998) Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes. J. Mol. Evol., 47, 691-696.
-
(1998)
J. Mol. Evol.
, vol.47
, pp. 691-696
-
-
McLean, M.J.1
Wolfe, K.H.2
Devine, K.M.3
-
12
-
-
84880473591
-
Back to the origin: Reconsidering replication, transcription, epigenetics, and cell cycle control
-
Evertts, A.G. and Coller, H.A. (2012) Back to the origin: reconsidering replication, transcription, epigenetics, and cell cycle control. Genes Cancer, 3, 678-696.
-
(2012)
Genes Cancer
, vol.3
, pp. 678-696
-
-
Evertts, A.G.1
Coller, H.A.2
-
13
-
-
0033974047
-
Mechanisms and consequences of replication fork arrest
-
Hyrien, O. (2000) Mechanisms and consequences of replication fork arrest. Biochimie, 82, 5-17.
-
(2000)
Biochimie
, vol.82
, pp. 5-17
-
-
Hyrien, O.1
-
15
-
-
0027486027
-
Initiation and termination of DNA replication in human rRNA genes
-
Little, R.D., Platt, T.H. and Schildkraut, C.L. (1993) Initiation and termination of DNA replication in human rRNA genes. Mol. Cell. Biol., 13, 6600-6613.
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 6600-6613
-
-
Little, R.D.1
Platt, T.H.2
Schildkraut, C.L.3
-
16
-
-
84921799659
-
Peaks cloaked in the mist: The landscape of mammalian replication origins
-
Hyrien, O. (2015) Peaks cloaked in the mist: the landscape of mammalian replication origins. J. Cell Biol., 208, 147-160.
-
(2015)
J. Cell Biol.
, vol.208
, pp. 147-160
-
-
Hyrien, O.1
-
17
-
-
84857191660
-
Transcription as a source of genome instability
-
Kim, N. and Jinks-Robertson, S. (2012) Transcription as a source of genome instability. Nat. Rev. Genet., 13, 204-214.
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 204-214
-
-
Kim, N.1
Jinks-Robertson, S.2
-
18
-
-
84862763199
-
The conflict between DNA replication and transcription
-
McGlynn, P., Savery, N.J. and Dillingham, M.S. (2012) The conflict between DNA replication and transcription. Mol. Microbiol., 85, 12-20.
-
(2012)
Mol. Microbiol.
, vol.85
, pp. 12-20
-
-
McGlynn, P.1
Savery, N.J.2
Dillingham, M.S.3
-
19
-
-
34249941504
-
Avoiding and resolving conflicts between DNA replication and transcription
-
Rudolph, C.J., Dhillon, P., Moore, T. and Lloyd, R.G. (2007) Avoiding and resolving conflicts between DNA replication and transcription. DNA Repair, 6, 981-993.
-
(2007)
DNA Repair
, vol.6
, pp. 981-993
-
-
Rudolph, C.J.1
Dhillon, P.2
Moore, T.3
Lloyd, R.G.4
-
20
-
-
84862490443
-
Replication-transcription conflicts in bacteria
-
Merrikh, H., Zhang, Y., Grossman, A.D. and Wang, J.D. (2012) Replication-transcription conflicts in bacteria. Nat. Rev. Microbiol., 10, 449-458.
-
(2012)
Nat. Rev. Microbiol.
, vol.10
, pp. 449-458
-
-
Merrikh, H.1
Zhang, Y.2
Grossman, A.D.3
Wang, J.D.4
-
21
-
-
84860578766
-
Replication fork reversal after replication-transcription collision
-
De Septenville, A.L., Duigou, S., Boubakri, H. and Michel, B. (2012) Replication fork reversal after replication-transcription collision. PLoS Genet., 8, e1002622.
-
(2012)
PLoS Genet.
, vol.8
, pp. e1002622
-
-
De Septenville, A.L.1
Duigou, S.2
Boubakri, H.3
Michel, B.4
-
22
-
-
75649142564
-
The helicases DinG, Rep and UvrD cooperate to promote replication across transcription units in vivo
-
Boubakri, H., de Septenville, A.L., Viguera, E. and Michel, B. (2010) The helicases DinG, Rep and UvrD cooperate to promote replication across transcription units in vivo. EMBO J., 29, 145-157.
-
(2010)
EMBO J.
, vol.29
, pp. 145-157
-
-
Boubakri, H.1
De Septenville, A.L.2
Viguera, E.3
Michel, B.4
-
23
-
-
0026733965
-
Consequences of replication fork movement through transcription units in vivo
-
French, S. (1992) Consequences of replication fork movement through transcription units in vivo. Science, 258, 1362-1365.
-
(1992)
Science
, vol.258
, pp. 1362-1365
-
-
French, S.1
-
24
-
-
76749094639
-
Co-orientation of replication and transcription preserves genome integrity
-
Srivatsan, A., Tehranchi, A., MacAlpine, D.M. and Wang, J.D. (2010) Co-orientation of replication and transcription preserves genome integrity. PLoS Genet, 6, e1000810.
-
(2010)
PLoS Genet
, vol.6
, pp. e1000810
-
-
Srivatsan, A.1
Tehranchi, A.2
MacAlpine, D.M.3
Wang, J.D.4
-
25
-
-
34248394295
-
Genome-wide coorientation of replication and transcription reduces adverse effects on replication in Bacillus subtilis
-
Wang, J.D., Berkmen, M.B. and Grossman, A.D. (2007) Genome-wide coorientation of replication and transcription reduces adverse effects on replication in Bacillus subtilis. Proc. Natl. Acad. Sci. U.S.A., 104, 5608-5613.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 5608-5613
-
-
Wang, J.D.1
Berkmen, M.B.2
Grossman, A.D.3
-
26
-
-
79960584723
-
Replication and segregation of an Escherichia coli chromosome with two replication origins
-
Wang, X., Lesterlin, C., Reyes-Lamothe, R., Ball, G. and Sherratt, D.J. (2011) Replication and segregation of an Escherichia coli chromosome with two replication origins. Proc. Natl. Acad. Sci. U.S.A., 108, E243-E250.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. E243-E250
-
-
Wang, X.1
Lesterlin, C.2
Reyes-Lamothe, R.3
Ball, G.4
Sherratt, D.J.5
-
27
-
-
80052008241
-
Linking RNA polymerase backtracking to genome instability in E. Coli
-
Dutta, D., Shatalin, K., Epshtein, V., Gottesman, M.E. and Nudler, E. (2011) Linking RNA polymerase backtracking to genome instability in E. coli. Cell, 146, 533-543.
-
(2011)
Cell
, vol.146
, pp. 533-543
-
-
Dutta, D.1
Shatalin, K.2
Epshtein, V.3
Gottesman, M.E.4
Nudler, E.5
-
28
-
-
22544464455
-
RNA polymerase modulators and DNA repair activities resolve conflicts between DNA replication and transcription
-
Trautinger, B.W., Jaktaji, R.P., Rusakova, E. and Lloyd, R.G. (2005) RNA polymerase modulators and DNA repair activities resolve conflicts between DNA replication and transcription. Mol. Cell, 19, 247-258.
-
(2005)
Mol. Cell
, vol.19
, pp. 247-258
-
-
Trautinger, B.W.1
Jaktaji, R.P.2
Rusakova, E.3
Lloyd, R.G.4
-
30
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko, K.A. and Wanner, B.L. (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. U.S.A., 97, 6640-6645.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
32
-
-
33746629428
-
Rep and PriA helicase activities prevent RecA from provoking unnecessary recombination during replication fork repair
-
Mahdi, A.A., Buckman, C., Harris, L. and Lloyd, R.G. (2006) Rep and PriA helicase activities prevent RecA from provoking unnecessary recombination during replication fork repair. Genes Dev., 20, 2135-2147.
-
(2006)
Genes Dev.
, vol.20
, pp. 2135-2147
-
-
Mahdi, A.A.1
Buckman, C.2
Harris, L.3
Lloyd, R.G.4
-
33
-
-
70449633073
-
Rep provides a second motor at the replisome to promote duplication of protein-bound DNA
-
Guy, C.P., Atkinson, J., Gupta, M.K., Mahdi, A.A., Gwynn, E.J., Rudolph, C.J., Moon, P.B., van Knippenberg, I.C., Cadman, C.J., Dillingham, M.S. et al. (2009) Rep provides a second motor at the replisome to promote duplication of protein-bound DNA. Mol. Cell, 36, 654-666.
-
(2009)
Mol. Cell
, vol.36
, pp. 654-666
-
-
Guy, C.P.1
Atkinson, J.2
Gupta, M.K.3
Mahdi, A.A.4
Gwynn, E.J.5
Rudolph, C.J.6
Moon, P.B.7
Van Knippenberg, I.C.8
Cadman, C.J.9
Dillingham, M.S.10
-
34
-
-
0037783310
-
The Escherichia coli amidase AmiC is a periplasmic septal ring component exported via the twin-arginine transport pathway
-
Bernhardt, T.G. and de Boer, P.A.J. (2003) The Escherichia coli amidase AmiC is a periplasmic septal ring component exported via the twin-arginine transport pathway. Mol. Microbiol., 48, 1171-1182.
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 1171-1182
-
-
Bernhardt, T.G.1
De Boer, P.A.J.2
-
35
-
-
0001672153
-
Hybridization between Escherichia coli and shigella
-
Luria, S.E. and Burrous, J.W. (1957) Hybridization between Escherichia coli and Shigella. J. Bacteriol., 74, 461-476.
-
(1957)
J. Bacteriol.
, vol.74
, pp. 461-476
-
-
Luria, S.E.1
Burrous, J.W.2
-
36
-
-
0015581350
-
Rapid mapping of conditional and auxotrophic mutations in Escherichia coli K-12
-
Low, B. (1973) Rapid mapping of conditional and auxotrophic mutations in Escherichia coli K-12. J. Bacteriol., 113, 798-812.
-
(1973)
J. Bacteriol.
, vol.113
, pp. 798-812
-
-
Low, B.1
-
37
-
-
84891145437
-
Replication of the Escherichia coli chromosome in RNase HI-deficient cells: Multiple initiation regions and fork dynamics
-
Maduike, N.Z., Tehranchi, A.K., Wang, J.D. and Kreuzer, K.N. (2014) Replication of the Escherichia coli chromosome in RNase HI-deficient cells: multiple initiation regions and fork dynamics. Mol. Microbiol., 91, 39-56.
-
(2014)
Mol. Microbiol.
, vol.91
, pp. 39-56
-
-
Maduike, N.Z.1
Tehranchi, A.K.2
Wang, J.D.3
Kreuzer, K.N.4
-
38
-
-
80051563593
-
Genome-wide detection of chromosomal rearrangements, indels, and mutations in circular chromosomes by short read sequencing
-
Skovgaard, O., Bak, M., Løbner-Olesen, A. and Tommerup, N. (2011) Genome-wide detection of chromosomal rearrangements, indels, and mutations in circular chromosomes by short read sequencing. Genome Res., 21, 1388-1393.
-
(2011)
Genome Res.
, vol.21
, pp. 1388-1393
-
-
Skovgaard, O.1
Bak, M.2
Løbner-Olesen, A.3
Tommerup, N.4
-
39
-
-
84891823877
-
The dynamics of genome replication using deep sequencing
-
Müller, C.A., Hawkins, M., Retkute, R., Malla, S., Wilson, R., Blythe, M.J., Nakato, R., Komata, M., Shirahige, K., de Moura, A.P.S. et al. (2014) The dynamics of genome replication using deep sequencing. Nucleic Acids Res., 42, e3.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. e3
-
-
Müller, C.A.1
Hawkins, M.2
Retkute, R.3
Malla, S.4
Wilson, R.5
Blythe, M.J.6
Nakato, R.7
Komata, M.8
Shirahige, K.9
De Moura, A.P.S.10
-
40
-
-
84936916896
-
Robust locally weighted regression and smoothing scatterplots
-
Cleveland, W.S. (1979) Robust locally weighted regression and smoothing scatterplots. J. Am. Stat. Assoc., 74, 829-836.
-
(1979)
J. Am. Stat. Assoc.
, vol.74
, pp. 829-836
-
-
Cleveland, W.S.1
-
41
-
-
84883132869
-
Avoiding chromosome pathology when replication forks collide
-
Rudolph, C.J., Upton, A.L., Stockum, A., Nieduszynski, C.A. and Lloyd, R.G. (2013) Avoiding chromosome pathology when replication forks collide. Nature, 500, 608-611.
-
(2013)
Nature
, vol.500
, pp. 608-611
-
-
Rudolph, C.J.1
Upton, A.L.2
Stockum, A.3
Nieduszynski, C.A.4
Lloyd, R.G.5
-
42
-
-
62049085766
-
Termination structures in the Escherichia coli chromosome replication fork trap
-
Duggin, I.G. and Bell, S.D. (2009) Termination structures in the Escherichia coli chromosome replication fork trap. J. Mol. Biol., 387, 532-539.
-
(2009)
J. Mol. Biol.
, vol.387
, pp. 532-539
-
-
Duggin, I.G.1
Bell, S.D.2
-
43
-
-
79952126098
-
Co-directional replication-transcription conflicts lead to replication restart
-
Merrikh, H., Machón, C., Grainger, W.H., Grossman, A.D. and Soultanas, P. (2011) Co-directional replication-transcription conflicts lead to replication restart. Nature, 470, 554-557.
-
(2011)
Nature
, vol.470
, pp. 554-557
-
-
Merrikh, H.1
MacHón, C.2
Grainger, W.H.3
Grossman, A.D.4
Soultanas, P.5
-
44
-
-
0037099681
-
Replication fork collapse at replication terminator sequences
-
Bidnenko, V., Ehrlich, S.D. and Michel, B. (2002) Replication fork collapse at replication terminator sequences. EMBO J., 21, 3898-3907.
-
(2002)
EMBO J.
, vol.21
, pp. 3898-3907
-
-
Bidnenko, V.1
Ehrlich, S.D.2
Michel, B.3
-
45
-
-
0029026635
-
DNA polymerase III holoenzyme: Structure and function of a chromosomal replicating machine
-
Kelman, Z. and O'Donnell, M. (1995) DNA polymerase III holoenzyme: structure and function of a chromosomal replicating machine. Annu. Rev. Biochem., 64, 171-200.
-
(1995)
Annu. Rev. Biochem.
, vol.64
, pp. 171-200
-
-
Kelman, Z.1
O'Donnell, M.2
-
46
-
-
15944409969
-
A new in vivo termination function for DNA polymerase I of Escherichia coli K12
-
Markovitz, A. (2005) A new in vivo termination function for DNA polymerase I of Escherichia coli K12. Mol. Microbiol., 55, 1867-1882.
-
(2005)
Mol. Microbiol.
, vol.55
, pp. 1867-1882
-
-
Markovitz, A.1
|