RNA polymerase modulators and DNA repair activities resolve conflicts between DNA replication and transcription

Molecular Cell

Volumn 19, Issue 2, 2005, Pages 247-258

  Trautinger, Brigitte W ^a   Jaktaji, Razieh P ^a   Rusakova, Ekaterina ^a   Lloyd, Robert G ^a  

^a UNIVERSITY OF NOTTINGHAM   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

DKSA PROTEIN; DNA; GREA PROTEIN; MFD PROTEIN; PPGPP PROTEIN; PROTEIN; RNA POLYMERASE; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL CELL; CONTROLLED STUDY; DNA REPAIR; DNA REPLICATION; DNA TRANSCRIPTION; GENE MUTATION; NONHUMAN; WILD TYPE;

DNA REPAIR; DNA REPLICATION; DNA-DIRECTED RNA POLYMERASES; ESCHERICHIA COLI K12; GUANOSINE TETRAPHOSPHATE; MUTATION; TIME FACTORS; TRANSCRIPTION, GENETIC; ULTRAVIOLET RAYS;

EID: 22544464455     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molcel.2005.06.004     Document Type: Article

References (31)

1. D.G. Anderson, and S.C. Kowalczykowski The translocating RecBCD enzyme stimulates recombination by directing RecA protein onto ssDNA in a chi-regulated manner Cell 90 1997 77 86
2. T.G. Bernhardt, and P.A. de Boer Screening for synthetic lethal mutants in Escherichia coli and identification of EnvC (YibP) as a periplasmic septal ring factor with murein hydrolase activity Mol. Microbiol. 52 2004 1255 1269
3. M. Cashel Preparation of guanosine tetraphosphate (ppGpp) and guanosine pentaphosphate (pppGpp) from Escherichia coli ribosomes Anal. Biochem. 57 1974 100 107
4. M. Cashel, D.R. Gentry, V.J. Hernandez, and D. Vinella The stringent response F.C. Neidhardt R. Curtiss III J.L. Ingraham E.C.C. Lin K.B. Low B. Magasanik W.S. Reznikoff M. Riley M. Schaechter H.E. Umbarger In Escherichia coli and Salmonella Cellular and Molecular Biology, Second Edition 1996 ASM Press Washington, DC 1458 1496
5. R.K. Chakraverty, and I.D. Hickson Defending genome integrity during DNA replication: a proposed role for RecQ family helicases Bioessays 21 1999 286 294
6. J. Courcelle, J.R. Donaldson, K.H. Chow, and C.T. Courcelle DNA damage-induced replication fork regression and processing in Escherichia coli Science 299 2003 1064 1067
7. A. Diez, N. Gustavsson, and T. Nystrom The universal stress protein A of Escherichia coli is required for resistance to DNA damaging agents and is regulated by a RecA/FtsK-dependent regulatory pathway Mol. Microbiol. 36 2000 1494 1503
8. R. Hengge-Aronis Regulation of gene expression during entry into stationary phase F.C. Neidhardt R. Curtiss III J.L. Ingraham E.C.C. Lin K.B. Low B. Magasanik W.S. Reznikoff M. Riley M. Schaechter H.E. Umbarger In Escherichia coli and Salmonella Cellular and Molecular Biology, Second Edition 1996 ASM Press Washington, DC 1497 1512
9. C.W. Hill, R.H. Grafstrom, B.W. Harnish, and B.S. Hillman Tandem duplications resulting from recombination between ribosomal RNA genes in Escherichia coli J. Mol. Biol. 116 1977 407 428
10. S.C. Kowalczykowski Initiation of genetic recombination and recombination-dependent replication Trends Biochem. Sci. 25 2000 156 165
11. M.T. Marr, and J.W. Roberts Function of transcription cleavage factors GreA and GreB at a regulatory pause site Mol. Cell 6 2000 1275 1285
12. P. McGlynn, and R.G. Lloyd Modulation of RNA polymerase by (p)ppGpp reveals a RecG-dependent mechanism for replication fork progression Cell 101 2000 35 45
13. P. McGlynn, and R.G. Lloyd Recombinational repair and restart of damaged replication forks Nat. Rev. Mol. Cell Biol. 3 2002 859 870
14. B. Michel, G. Grompone, M.J. Flores, and V. Bidnenko Multiple pathways process stalled replication forks Proc. Natl. Acad. Sci. USA 101 2004 12783 12788
15. J.H. Miller Experiments in molecular genetics 1972 Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY
16. K. Morimatsu, and S.C. Kowalczykowski RecFOR proteins load RecA protein onto gapped DNA to accelerate DNA strand exchange: a universal step of recombinational repair Mol. Cell 11 2003 1337 1347
17. W.L. Nowatzke, and J.P. Richardson Characterization of an unusual Rho factor from the high G + C gram-positive bacterium Micrococcus luteus J. Biol. Chem. 271 1996 742 747
18. J.S. Park, M.T. Marr, and J.W. Roberts E. coli transcription repair coupling factor (Mfd protein) rescues arrested complexes by promoting forward translocation Cell 109 2002 757 767
19. B.J. Paul, M.M. Barker, W. Ross, D.A. Schneider, C. Webb, J.W. Foster, and R.L. Gourse DksA; A critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP Cell 118 2004 311 322
20. A. Perederina, V. Svetlov, M.N. Vassylyeva, T.H. Tahirov, S. Yokoyama, I. Artsimovitch, and D.G. Vassylyev Regulation through the secondary channel-structural framework for ppGpp-DksA synergism during transcription Cell 118 2004 297 309
21. S. Rangarajan, R. Woodgate, and M.F. Goodman Replication restart in UV-irradiated Escherichia coli involving pols II, III, V, PriA, RecA and RecFOR proteins Mol. Microbiol. 43 2002 617 628
22. M. Sassanfar, and J.W. Roberts Nature of the SOS-inducing signal in Escherichia coli. The involvement of DNA replication J. Mol. Biol. 212 1990 79 96
23. M. Seigneur, V. Bidnenko, S.D. Ehrlich, and B. Michel RuvAB acts at arrested replication forks Cell 95 1998 419 430
24. C.P. Selby, and A. Sancar Molecular mechanism of transcription-repair coupling Science 260 1993 53 58
25. B.J. Thomas, and R. Rothstein Elevated recombination rates in transcriptionally active DNA Cell 56 1989 619 630
26. B.W. Trautinger, and R.G. Lloyd Modulation of DNA repair by mutations flanking the DNA channel through RNA polymerase EMBO J. 21 2002 6944 6953
27. A.R. Venkitaraman Cancer susceptibility and the functions of BRCA1 and BRCA2 Cell 108 2002 171 182
28. G.C. Walker The SOS response of Escherichia coli F.C. Neidhardt R. Curtiss III J.L. Ingraham E.C.C. Lin K.B. Low B. Magasanik W.S. Reznikoff M. Riley M. Schaechter H.E. Umbarger In Escherichia coli and Salmonella Cellular and Molecular Biology, Second Edition, 1996 ASM Press Washington, DC 1400 1416
29. J.M. Wong, and C.J. Ingles A compromised yeast RNA polymerase II enhances UV sensitivity in the absence of global genome nucleotide excision repair Mol. Gen. Genet. 264 2001 842 851
30. L. Xu, and K.J. Marians PriA mediates DNA replication pathway choice at recombination intermediates Mol. Cell 11 2003 817 826
31. S.L. Yu, S.K. Lee, R.E. Johnson, L. Prakash, and S. Prakash The stalling of transcription at abasic sites is highly mutagenic Mol. Cell. Biol. 23 2003 382 388