-
1
-
-
79958059909
-
Protein disorder-a breakthrough invention of evolution?
-
21514145 Epub 2011/04/26
-
Schlessinger A, Schaefer C, Vicedo E, Schmidberger M, Punta M, Rost B. Protein disorder-a breakthrough invention of evolution? Curr Opin Struct Biol. 2011;21(3):412-8. Epub 2011/04/26. doi: S0959-440X (11) 00066-2 [pii] doi: 10.1016/j.sbi.2011.03.014 PMID: 21514145.
-
(2011)
Curr Opin Struct Biol.
, vol.21
, Issue.3
, pp. 412-418
-
-
Schlessinger, A.1
Schaefer, C.2
Vicedo, E.3
Schmidberger, M.4
Punta, M.5
Rost, B.6
-
2
-
-
60349101875
-
Linking folding and binding
-
19157855 Epub 2009/01/23, PubMed Central PMCID: PMC2675572
-
Wright PE, Dyson HJ. Linking folding and binding. Curr Opin Struct Biol. 2009;19(1):31-8. Epub 2009/01/23. doi: S0959-440X (08) 00179-6 [pii] doi: 10.1016/j.sbi.2008.12.003 PMID: 19157855; PubMed Central PMCID: PMC2675572.
-
(2009)
Curr Opin Struct Biol.
, vol.19
, Issue.1
, pp. 31-38
-
-
Wright, P.E.1
Dyson, H.J.2
-
3
-
-
25144472591
-
Showing your ID: Intrinsic disorder as an ID for recognition, regulation and cell signaling
-
16094605 Epub 2005/08/12
-
Uversky VN, Oldfield CJ, Dunker AK. Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling. J Mol Recognit. 2005;18(5):343-84. Epub 2005/08/12. doi: 10.1002/jmr. 747 PMID: 16094605.
-
(2005)
J Mol Recognit.
, vol.18
, Issue.5
, pp. 343-384
-
-
Uversky, V.N.1
Oldfield, C.J.2
Dunker, A.K.3
-
4
-
-
27144464910
-
Flexible nets. The roles of intrinsic disorder in protein interaction networks
-
16218947 Epub 2005/10/13
-
Dunker AK, Cortese MS, Romero P, Iakoucheva LM, Uversky VN. Flexible nets. The roles of intrinsic disorder in protein interaction networks. FEBS J. 2005;272(20):5129-48. Epub 2005/10/13. doi: EJB4948 [pii] doi: 10.1111/j.1742-4658.2005.04948.x PMID: 16218947.
-
(2005)
FEBS J.
, vol.272
, Issue.20
, pp. 5129-5148
-
-
Dunker, A.K.1
Cortese, M.S.2
Romero, P.3
Iakoucheva, L.M.4
Uversky, V.N.5
-
5
-
-
20444376186
-
The interplay between structure and function in intrinsically unstructured proteins
-
15943980 Epub 2005/06/10
-
Tompa P. The interplay between structure and function in intrinsically unstructured proteins. FEBS Lett. 2005;579(15):3346-54. Epub 2005/06/10. doi: S0014-5793 (05) 00424-2 [pii] doi: 10.1016/j. febslet.2005.03.072 PMID: 15943980.
-
(2005)
FEBS Lett.
, vol.579
, Issue.15
, pp. 3346-3354
-
-
Tompa, P.1
-
6
-
-
34548750953
-
Natively unstructured regions in proteins identified from contact predictions
-
17709338 Epub 2007/08/22
-
Schlessinger A, Punta M, Rost B. Natively unstructured regions in proteins identified from contact predictions. Bioinformatics. 2007;23(18):2376-84. Epub 2007/08/22. doi: btm349 [pii] doi: 10.1093/bioinformatics/btm349 PMID: 17709338.
-
(2007)
Bioinformatics
, vol.23
, Issue.18
, pp. 2376-2384
-
-
Schlessinger, A.1
Punta, M.2
Rost, B.3
-
7
-
-
57049095821
-
Function and structure of inherently disordered proteins
-
18952168 Epub 2008/10/28
-
Dunker AK, Silman I, Uversky VN, Sussman JL. Function and structure of inherently disordered proteins. Curr Opin Struct Biol. 2008;18(6):756-64. Epub 2008/10/28. doi: S0959-440X (08) 00151-6 [pii] doi: 10.1016/j.sbi.2008.10.002 PMID: 18952168.
-
(2008)
Curr Opin Struct Biol.
, vol.18
, Issue.6
, pp. 756-764
-
-
Dunker, A.K.1
Silman, I.2
Uversky, V.N.3
Sussman, J.L.4
-
8
-
-
34447558571
-
Intrinsic disorder in yeast transcriptional regulatory network
-
17510967 Epub 2007/05/19
-
Singh GP, Dash D. Intrinsic disorder in yeast transcriptional regulatory network. Proteins. 2007;68(3):602-5. Epub 2007/05/19. doi: 10.1002/prot.21497 PMID: 17510967.
-
(2007)
Proteins
, vol.68
, Issue.3
, pp. 602-605
-
-
Singh, G.P.1
Dash, D.2
-
9
-
-
56249101714
-
Malleable machines take shape in eukaryotic transcriptional regulation
-
19008886 Epub 2008/11/15, PubMed Central PMCID: PMC2921704
-
Fuxreiter M, Tompa P, Simon I, Uversky VN, Hansen JC, Asturias FJ. Malleable machines take shape in eukaryotic transcriptional regulation. Nat Chem Biol. 2008;4(12):728-37. Epub 2008/11/15. doi: nchembio.127 [pii] doi: 10.1038/nchembio.127 PMID: 19008886; PubMed Central PMCID: PMC2921704.
-
(2008)
Nat Chem Biol.
, vol.4
, Issue.12
, pp. 728-737
-
-
Fuxreiter, M.1
Tompa, P.2
Simon, I.3
Uversky, V.N.4
Hansen, J.C.5
Asturias, F.J.6
-
10
-
-
0036968309
-
Loopy proteins appear conserved in evolution
-
12215414 Epub 2002/09/07
-
Liu J, Tan H, Rost B. Loopy proteins appear conserved in evolution. J Mol Biol. 2002;322(1):53-64. Epub 2002/09/07. doi: S0022283602007362 [pii]. PMID: 12215414.
-
(2002)
J Mol Biol.
, vol.322
, Issue.1
, pp. 53-64
-
-
Liu, J.1
Tan, H.2
Rost, B.3
-
11
-
-
33144488960
-
Simple fold composition and modular architecture of the nuclear pore complex
-
16461911 Epub 2006/02/08, PubMed Central PMCID: PMC1413685
-
Devos D, Dokudovskaya S, Williams R, Alber F, Eswar N, Chait BT, et al. Simple fold composition and modular architecture of the nuclear pore complex. Proc Natl Acad Sci USA. 2006;103(7):2172-7. Epub 2006/02/08. doi: 0506345103 [pii] doi: 10.1073/pnas.0506345103 PMID: 16461911; PubMed Central PMCID: PMC1413685.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, Issue.7
, pp. 2172-2177
-
-
Devos, D.1
Dokudovskaya, S.2
Williams, R.3
Alber, F.4
Eswar, N.5
Chait, B.T.6
-
12
-
-
0034570889
-
Intrinsic protein disorder in complete genomes
-
11700597 Epub 2001/11/09
-
Dunker AK, Obradovic Z, Romero P, Garner EC, Brown CJ. Intrinsic protein disorder in complete genomes. Genome Inform Ser Workshop Genome Inform. 2000;11:161-71. Epub 2001/11/09. PMID: 11700597.
-
(2000)
Genome Inform Ser Workshop Genome Inform
, vol.11
, pp. 161-171
-
-
Dunker, A.K.1
Obradovic, Z.2
Romero, P.3
Garner, E.C.4
Brown, C.J.5
-
13
-
-
33749517180
-
Honing the in silico toolkit for detecting protein disorder
-
17001103 Epub 2006/09/27
-
Esnouf RM, Hamer R, Sussman JL, Silman I, Trudgian D, Yang ZR, et al. Honing the in silico toolkit for detecting protein disorder. Acta Crystallogr D Biol Crystallogr. 2006;62(Pt 10):1260-6. Epub 2006/09/27. doi: S0907444906033580 [pii] doi: 10.1107/S0907444906033580 PMID: 17001103.
-
(2006)
Acta Crystallogr D Biol Crystallogr
, vol.62
, pp. 1260-1266
-
-
Esnouf, R.M.1
Hamer, R.2
Sussman, J.L.3
Silman, I.4
Trudgian, D.5
Yang, Z.R.6
-
14
-
-
79851508882
-
Bringing order to protein disorder through comparative genomics and genetic interactions
-
21324131 PubMed Central PMCID: PMC3188796
-
Bellay J, Han S, Michaut M, Kim T, Costanzo M, Andrews BJ, et al. Bringing order to protein disorder through comparative genomics and genetic interactions. Genome Biol. 2011;12(2):R14. doi: 10. 1186/gb-2011-12-2-r14 PMID: 21324131; PubMed Central PMCID: PMC3188796.
-
(2011)
Genome Biol.
, vol.12
, Issue.2
, pp. R14
-
-
Bellay, J.1
Han, S.2
Michaut, M.3
Kim, T.4
Costanzo, M.5
Andrews, B.J.6
-
15
-
-
41049091705
-
Intrinsic disorder in pathogenic and non-pathogenic microbes: Discovering and analyzing the unfoldomes of early-branching eukaryotes
-
18354786 Epub 2008/03/21
-
Mohan A, Sullivan WJ Jr, Radivojac P, Dunker AK, Uversky VN. Intrinsic disorder in pathogenic and non-pathogenic microbes: discovering and analyzing the unfoldomes of early-branching eukaryotes. Mol Biosyst. 2008;4(4):328-40. Epub 2008/03/21. doi: 10.1039/b719168e PMID: 18354786.
-
(2008)
Mol Biosyst.
, vol.4
, Issue.4
, pp. 328-340
-
-
Mohan, A.1
Sullivan, W.J.2
Radivojac, P.3
Dunker, A.K.4
Uversky, V.N.5
-
17
-
-
0037079014
-
The structure of the protein universe and genome evolution
-
12432406 Epub 2002/11/15
-
Koonin EV, Wolf YI, Karev GP. The structure of the protein universe and genome evolution. Nature. 2002;420(6912):218-23. Epub 2002/11/15. doi: 10.1038/nature01256 nature01256 [pii]. PMID: 12432406.
-
(2002)
Nature
, vol.420
, Issue.6912
, pp. 218-223
-
-
Koonin, E.V.1
Wolf, Y.I.2
Karev, G.P.3
-
18
-
-
2942544498
-
Protein interaction networks from yeast to human
-
15193308 Epub 2004/06/15
-
Bork P, Jensen LJ, von Mering C, Ramani AK, Lee I, Marcotte EM. Protein interaction networks from yeast to human. Curr Opin Struct Biol. 2004;14(3):292-9. Epub 2004/06/15. doi: 10.1016/j.sbi.2004.05.003 S0959440X04000776 [pii]. PMID: 15193308.
-
(2004)
Curr Opin Struct Biol.
, vol.14
, Issue.3
, pp. 292-299
-
-
Bork, P.1
Jensen, L.J.2
Von Mering, C.3
Ramani, A.K.4
Lee, I.5
Marcotte, E.M.6
-
19
-
-
80052841827
-
Differences in the number of intrinsically disordered regions between yeast duplicated proteins, and their relationship with functional divergence
-
21949823 PubMed Central PMCID: PMC3174238
-
Montanari F, Shields DC, Khaldi N. Differences in the number of intrinsically disordered regions between yeast duplicated proteins, and their relationship with functional divergence. PLoS One. 2011;6(9):e24989. doi: 10.1371/journal.pone.0024989 PMID: 21949823; PubMed Central PMCID: PMC3174238.
-
(2011)
PLoS One
, vol.6
, Issue.9
, pp. e24989
-
-
Montanari, F.1
Shields, D.C.2
Khaldi, N.3
-
20
-
-
84907406045
-
Intrinsically disordered segments affect protein half-life in the cell and during evolution
-
25220455
-
van der Lee R, Lang B, Kruse K, Gsponer J, Sanchez de Groot N, Huynen MA, et al. Intrinsically disordered segments affect protein half-life in the cell and during evolution. Cell reports. 2014;8(6):1832-44. doi: 10.1016/j.celrep. 2014.07.055 PMID: 25220455.
-
(2014)
Cell Reports
, vol.8
, Issue.6
, pp. 1832-1844
-
-
Van Der Lee, R.1
Lang, B.2
Kruse, K.3
Gsponer, J.4
Sanchez De Groot, N.5
Huynen, M.A.6
-
21
-
-
41149125082
-
Structural disorder serves as a weak signal for intracellular protein degradation
-
18004785
-
Tompa P, Prilusky J, Silman I, Sussman JL. Structural disorder serves as a weak signal for intracellular protein degradation. Proteins. 2008;71(2):903-9. doi: 10.1002/prot.21773 PMID: 18004785.
-
(2008)
Proteins
, vol.71
, Issue.2
, pp. 903-909
-
-
Tompa, P.1
Prilusky, J.2
Silman, I.3
Sussman, J.L.4
-
22
-
-
57149116929
-
Tight regulation of unstructured proteins: From transcript synthesis to protein degradation
-
19039133 PubMed Central PMCID: PMC2803065
-
Gsponer J, Futschik ME, Teichmann SA, Babu MM. Tight regulation of unstructured proteins: from transcript synthesis to protein degradation. Science. 2008;322(5906):1365-8. doi: 10.1126/science. 1163581 PMID: 19039133; PubMed Central PMCID: PMC2803065.
-
(2008)
Science
, vol.322
, Issue.5906
, pp. 1365-1368
-
-
Gsponer, J.1
Futschik, M.E.2
Teichmann, S.A.3
Babu, M.M.4
-
23
-
-
0034808117
-
Comparing function and structure between entire proteomes
-
11567088 Epub 2001/09/22, PubMed Central PMCID: PMC2374214
-
Liu J, Rost B. Comparing function and structure between entire proteomes. Protein Sci. 2001;10(10):1970-9. Epub 2001/09/22. doi: 10.1110/ps.10101 PMID: 11567088; PubMed Central PMCID: PMC2374214.
-
(2001)
Protein Sci.
, vol.10
, Issue.10
, pp. 1970-1979
-
-
Liu, J.1
Rost, B.2
-
24
-
-
0033828440
-
Eukaryote-specific domains in translation initiation factors: Implications for translation regulation and evolution of the translation system
-
10958635 Epub 2000/08/25, PubMed Central PMCID: PMC310937
-
Aravind L, Koonin EV. Eukaryote-specific domains in translation initiation factors: implications for translation regulation and evolution of the translation system. Genome Res. 2000;10(8):1172-84. Epub 2000/08/25. PMID: 10958635; PubMed Central PMCID: PMC310937.
-
(2000)
Genome Res.
, vol.10
, Issue.8
, pp. 1172-1184
-
-
Aravind, L.1
Koonin, E.V.2
-
26
-
-
0030720480
-
A structural census of the current population of protein sequences
-
Gerstein M, Levitt M. A structural census of the current population of protein sequences. Proceedings of the National Academy of Sciences. 1997;94(22):11911-6.
-
(1997)
Proceedings of the National Academy of Sciences
, vol.94
, Issue.22
, pp. 11911-11916
-
-
Gerstein, M.1
Levitt, M.2
-
27
-
-
0036601151
-
Did evolution leap to create the protein universe?
-
12127462 Epub 2002/07/20
-
Rost B. Did evolution leap to create the protein universe? Curr Opin Struct Biol. 2002;12(3):409-16. Epub 2002/07/20. doi: S0959440X02003378 [pii]. PMID: 12127462.
-
(2002)
Curr Opin Struct Biol.
, vol.12
, Issue.3
, pp. 409-416
-
-
Rost, B.1
-
28
-
-
9444273167
-
Components of coated vesicles and nuclear pore complexes share a common molecular architecture
-
15523559 Epub 2004/11/04, PubMed Central PMCID: PMC524472
-
Devos D, Dokudovskaya S, Alber F, Williams R, Chait BT, Sali A, et al. Components of coated vesicles and nuclear pore complexes share a common molecular architecture. PLoS Biol. 2004;2(12):e380. Epub 2004/11/04. doi: 10.1371/journal.pbio.0020380 PMID: 15523559; PubMed Central PMCID: PMC524472.
-
(2004)
PLoS Biol.
, vol.2
, Issue.12
, pp. e380
-
-
Devos, D.1
Dokudovskaya, S.2
Alber, F.3
Williams, R.4
Chait, B.T.5
Sali, A.6
-
29
-
-
0034981542
-
Structural basis of thermostability in hyperthermophilic proteins, or "there's more than one way to skin a cat"
-
11398484 Epub 2001/06/12
-
Petsko GA. Structural basis of thermostability in hyperthermophilic proteins, or "there's more than one way to skin a cat". Methods Enzymol. 2001;334:469-78. Epub 2001/06/12. doi: S0076-6879 (01) 34486-5 [pii]. PMID: 11398484.
-
(2001)
Methods Enzymol.
, vol.334
, pp. 469-478
-
-
Petsko, G.A.1
-
30
-
-
30844449653
-
Contribution of electrostatic interactions, compactness and quaternary structure to protein thermostability: Lessons from structural genomics of Thermotoga maritima
-
16375925 Epub 2005/12/27
-
Robinson-Rechavi M, Alibes A, Godzik A. Contribution of electrostatic interactions, compactness and quaternary structure to protein thermostability: lessons from structural genomics of Thermotoga maritima. J Mol Biol. 2006;356(2):547-57. Epub 2005/12/27. doi: S0022-2836 (05) 01479-8 [pii] doi: 10. 1016/j.jmb.2005.11.065 PMID: 16375925.
-
(2006)
J Mol Biol.
, vol.356
, Issue.2
, pp. 547-557
-
-
Robinson-Rechavi, M.1
Alibes, A.2
Godzik, A.3
-
31
-
-
0034017055
-
Factors enhancing protein thermostability
-
10775659 Epub 2000/04/25
-
Kumar S, Tsai CJ, Nussinov R. Factors enhancing protein thermostability. Protein Eng. 2000;13(3):179-91. Epub 2000/04/25. PMID: 10775659.
-
(2000)
Protein Eng.
, vol.13
, Issue.3
, pp. 179-191
-
-
Kumar, S.1
Tsai, C.J.2
Nussinov, R.3
-
32
-
-
0034191064
-
The stability of thermophilic proteins: A study based on comprehensive genome comparison
-
11793224 Epub 2002/01/17
-
Das R, Gerstein M. The stability of thermophilic proteins: a study based on comprehensive genome comparison. Funct Integr Genomics. 2000;1(1):76-88. Epub 2002/01/17. doi: 10.1007/s101420000003 PMID: 11793224.
-
(2000)
Funct Integr Genomics
, vol.1
, Issue.1
, pp. 76-88
-
-
Das, R.1
Gerstein, M.2
-
33
-
-
0348047627
-
Proteomic signatures: Amino acid and oligopeptide compositions differentiate among phyla
-
14705021 Epub 2004/01/06
-
Pe'er I, Felder CE, Man O, Silman I, Sussman JL, Beckmann JS. Proteomic signatures: amino acid and oligopeptide compositions differentiate among phyla. Proteins. 2004;54(1):20-40. Epub 2004/01/06. doi: 10.1002/prot.10559 PMID: 14705021.
-
(2004)
Proteins
, vol.54
, Issue.1
, pp. 20-40
-
-
Pe'er, I.1
Felder, C.E.2
Man, O.3
Silman, I.4
Sussman, J.L.5
Beckmann, J.S.6
-
34
-
-
33645498972
-
Psychrophilic microorganisms: Challenges for life
-
16585939 Epub 2006/04/06, PubMed Central PMCID: PMC1456908
-
D'Amico S, Collins T, Marx JC, Feller G, Gerday C. Psychrophilic microorganisms: challenges for life. EMBO Rep. 2006;7(4):385-9. Epub 2006/04/06. doi: 7400662 [pii] doi: 10.1038/sj.embor.7400662 PMID: 16585939; PubMed Central PMCID: PMC1456908.
-
(2006)
EMBO Rep.
, vol.7
, Issue.4
, pp. 385-389
-
-
D'Amico, S.1
Collins, T.2
Marx, J.C.3
Feller, G.4
Gerday, C.5
-
35
-
-
47149088683
-
Molecular signature of hypersaline adaptation: Insights from genome and proteome composition of halophilic prokaryotes
-
18397532 Epub 2008/04/10, PubMed Central PMCID: PMC2643941
-
Paul S, Bag SK, Das S, Harvill ET, Dutta C. Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes. Genome Biol. 2008;9(4):R70. Epub 2008/04/10. doi: gb-2008-9-4-r70 [pii] doi: 10.1186/gb-2008-9-4-r70 PMID: 18397532; PubMed Central PMCID: PMC2643941.
-
(2008)
Genome Biol.
, vol.9
, Issue.4
, pp. R70
-
-
Paul, S.1
Bag, S.K.2
Das, S.3
Harvill, E.T.4
Dutta, C.5
-
36
-
-
84860833500
-
Reorganizing the protein space at the Universal Protein Resource (UniProt)
-
22102590 Database issue:, Epub 2011/11/22, PubMed Central PMCID: PMC3245120
-
Consortium TU. Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Res. 2011;40(Database issue):D71-5. Epub 2011/11/22. doi: gkr981 [pii] doi: 10.1093/nar/gkr981 PMID: 22102590; PubMed Central PMCID: PMC3245120.
-
(2011)
Nucleic Acids Res.
, vol.40
, pp. D71-D75
-
-
Consortium, T.U.1
-
37
-
-
84859165788
-
The Genomes OnLine Database (GOLD) v. 4: Status of genomic and metagenomic projects and their associated metadata
-
22135293 Database issue:, Epub 2011/12/03, PubMed Central PMCID: PMC3245063
-
Pagani I, Liolios K, Jansson J, Chen IM, Smirnova T, Nosrat B, et al. The Genomes OnLine Database (GOLD) v. 4: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res. 40(Database issue):D571-9. Epub 2011/12/03. doi: gkr1100 [pii] doi: 10.1093/nar/gkr1100 PMID: 22135293; PubMed Central PMCID: PMC3245063.
-
Nucleic Acids Res.
, vol.40
, pp. D571-D579
-
-
Pagani, I.1
Liolios, K.2
Jansson, J.3
Chen, I.M.4
Smirnova, T.5
Nosrat, B.6
-
38
-
-
0035931866
-
Life in extreme environments
-
11234023
-
Mancinelli L J RRL. Life in extreme environments. Nature 2001;409:1092-101. doi: 10.1038/35059215 PMID: 11234023
-
(2001)
Nature
, vol.409
, pp. 1092-1101
-
-
Mancinelli, L.J.R.R.L.1
-
39
-
-
0019059905
-
Biological limits of temperature and pressure
-
7413183 Epub 1980/09/01
-
Morita RY. Biological limits of temperature and pressure. Orig Life. 1980;10(3):215-22. Epub 1980/09/01. PMID: 7413183.
-
(1980)
Orig Life
, vol.10
, Issue.3
, pp. 215-222
-
-
Morita, R.Y.1
-
40
-
-
0016516090
-
Psychrophilic bacteria
-
1095004 Epub 1975/06/01, PubMed Central PMCID: PMC413900
-
Morita RY. Psychrophilic bacteria. Bacteriol Rev. 1975;39(2):144-67. Epub 1975/06/01. PMID: 1095004; PubMed Central PMCID: PMC413900.
-
(1975)
Bacteriol Rev.
, vol.39
, Issue.2
, pp. 144-167
-
-
Morita, R.Y.1
-
41
-
-
34547599318
-
Natively unstructured loops differ from other loops
-
17658943 Epub 2007/07/31, PubMed Central PMCID: PMC1924875
-
Schlessinger A, Liu J, Rost B. Natively unstructured loops differ from other loops. PLoS Comput Biol. 2007;3(7):e140. Epub 2007/07/31. doi: 06-PLCB-RA-0416 [pii] doi: 10.1371/journal.pcbi.0030140 PMID: 17658943; PubMed Central PMCID: PMC1924875.
-
(2007)
PLoS Comput Biol.
, vol.3
, Issue.7
, pp. e140
-
-
Schlessinger, A.1
Liu, J.2
Rost, B.3
-
42
-
-
84885949386
-
Improved disorder prediction by combination of orthogonal approaches
-
19209228 Epub 2009/02/12, PubMed Central PMCID: PMC2635965
-
Schlessinger A, Punta M, Yachdav G, Kajan L, Rost B. Improved disorder prediction by combination of orthogonal approaches. PLoS One. 2009;4(2):e4433. Epub 2009/02/12. doi: 10.1371/journal. pone.0004433 PMID: 19209228; PubMed Central PMCID: PMC2635965.
-
(2009)
PLoS One
, vol.4
, Issue.2
, pp. e4433
-
-
Schlessinger, A.1
Punta, M.2
Yachdav, G.3
Kajan, L.4
Rost, B.5
-
43
-
-
24044538903
-
IUPred: Web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
-
15955779 Epub 2005/06/16
-
Dosztanyi Z, Csizmok V, Tompa P, Simon I. IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. Bioinformatics. 2005;21(16):3433-4. Epub 2005/06/16. doi: bti541 [pii] doi: 10.1093/bioinformatics/bti541 PMID: 15955779.
-
(2005)
Bioinformatics
, vol.21
, Issue.16
, pp. 3433-3434
-
-
Dosztanyi, Z.1
Csizmok, V.2
Tompa, P.3
Simon, I.4
-
44
-
-
14844342815
-
The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins
-
15769473 Epub 2005/03/17
-
Dosztanyi Z, Csizmok V, Tompa P, Simon I. The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins. J Mol Biol. 2005;347(4):827-39. Epub 2005/03/17. doi: S0022-2836 (05) 00129-4 [pii] doi: 10.1016/j.jmb.2005.01.071 PMID: 15769473.
-
(2005)
J Mol Biol.
, vol.347
, Issue.4
, pp. 827-839
-
-
Dosztanyi, Z.1
Csizmok, V.2
Tompa, P.3
Simon, I.4
-
45
-
-
77957766242
-
Reduction in structural disorder and functional complexity in the thermal adaptation of prokaryotes
-
20711457 PubMed Central PMCID: PMC2920320
-
Burra PV, Kalmar L, Tompa P. Reduction in structural disorder and functional complexity in the thermal adaptation of prokaryotes. PLoS One. 2010;5(8):e12069. doi: 10.1371/journal.pone.0012069 PMID: 20711457; PubMed Central PMCID: PMC2920320.
-
(2010)
PLoS One
, vol.5
, Issue.8
, pp. e12069
-
-
Burra, P.V.1
Kalmar, L.2
Tompa, P.3
-
46
-
-
84928995861
-
Comprehensive large-scale assessment of intrinsic protein disorder
-
25246432
-
Walsh I, Giollo M, Di Domenico T, Ferrari C, Zimmermann O, Tosatto SC. Comprehensive large-scale assessment of intrinsic protein disorder. Bioinformatics. 2014. doi: 10.1093/bioinformatics/btu625 PMID: 25246432.
-
(2014)
Bioinformatics
-
-
Walsh, I.1
Giollo, M.2
Di Domenico, T.3
Ferrari, C.4
Zimmermann, O.5
Tosatto, S.C.6
-
47
-
-
33845873289
-
Interactive Tree of Life (iTOL): An online tool for phylogenetic tree display and annotation
-
17050570 Epub 2006/10/20
-
Letunic I, Bork P. Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics. 2007;23(1):127-8. Epub 2006/10/20. doi: btl529 [pii] doi: 10.1093/bioinformatics/btl529 PMID: 17050570.
-
(2007)
Bioinformatics
, vol.23
, Issue.1
, pp. 127-128
-
-
Letunic, I.1
Bork, P.2
-
48
-
-
79960004119
-
Interactive Tree of Life v2: Online annotation and display of phylogenetic trees made easy
-
21470960 Web Server issue:, Epub 2011/04/08, PubMed Central PMCID: PMC3125724
-
Letunic I, Bork P. Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res. 2011;39(Web Server issue):W475-8. Epub 2011/04/08. doi: gkr201 [pii] doi: 10.1093/nar/gkr201 PMID: 21470960; PubMed Central PMCID: PMC3125724.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. W475-W478
-
-
Letunic, I.1
Bork, P.2
-
49
-
-
58149185141
-
GenBank
-
18940867 Database issue:, PubMed Central PMCID: PMC2686462
-
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW. GenBank. Nucleic Acids Res. 2009;37(Database issue):D26-31. doi: 10.1093/nar/gkn723 PMID: 18940867; PubMed Central PMCID: PMC2686462.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D26-D31
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Sayers, E.W.5
-
50
-
-
58149200954
-
Database resources of the national center for biotechnology information
-
18940862 Database issue:, PubMed Central PMCID: PMC2686545
-
Sayers EW, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V, et al. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 2009;37(Database issue):D5-15. doi: 10.1093/nar/gkn741 PMID: 18940862; PubMed Central PMCID: PMC2686545.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D5-D15
-
-
Sayers, E.W.1
Barrett, T.2
Benson, D.A.3
Bryant, S.H.4
Canese, K.5
Chetvernin, V.6
-
51
-
-
84856562355
-
The NCBI Taxonomy database
-
22139910 Database issue:, Epub 2011/12/06, PubMed Central PMCID: PMC3245000
-
Federhen S. The NCBI Taxonomy database. Nucleic Acids Res. 2012;40(Database issue):D136-43. Epub 2011/12/06. doi: gkr1178 [pii] doi: 10.1093/nar/gkr1178 PMID: 22139910; PubMed Central PMCID: PMC3245000.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D136-D143
-
-
Federhen, S.1
-
52
-
-
33746263240
-
Protein-protein interactions of the hyperthermophilic archaeon Pyrococcus horikoshii OT3
-
16356270 Epub 2005/12/17, PubMed Central PMCID: PMC1414084
-
Usui K, Katayama S, Kanamori-Katayama M, Ogawa C, Kai C, Okada M, et al. Protein-protein interactions of the hyperthermophilic archaeon Pyrococcus horikoshii OT3. Genome Biol. 2005;6(12):R98. Epub 2005/12/17. doi: gb-2005-6-12-r98 [pii] doi: 10.1186/gb-2005-6-12-r98 PMID: 16356270; PubMed Central PMCID: PMC1414084.
-
(2005)
Genome Biol.
, vol.6
, Issue.12
, pp. R98
-
-
Usui, K.1
Katayama, S.2
Kanamori-Katayama, M.3
Ogawa, C.4
Kai, C.5
Okada, M.6
-
53
-
-
23344439437
-
The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses
-
16043709 Epub 2005/07/27, PubMed Central PMCID: PMC1180510
-
Methe BA, Nelson KE, Deming JW, Momen B, Melamud E, Zhang X, et al. The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses. Proc Natl Acad Sci USA. 2005;102(31):10913-8. Epub 2005/07/27. doi: 0504766102 [pii] doi: 10.1073/pnas.0504766102 PMID: 16043709; PubMed Central PMCID: PMC1180510.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, Issue.31
, pp. 10913-10918
-
-
Methe, B.A.1
Nelson, K.E.2
Deming, J.W.3
Momen, B.4
Melamud, E.5
Zhang, X.6
-
54
-
-
0030801002
-
Gapped Blast and PSIBlast: A new generation of protein database search programs
-
9254694
-
Altschul SF, Madden TL, Schaeffer AA, Zhang J, Zhang Z, Miller W, et al. Gapped Blast and PSIBlast: a new generation of protein database search programs. Nucleic Acids Research. 1997;25:3389-402. PMID: 9254694
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaeffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
-
55
-
-
0026030641
-
Database of homology-derived protein structures and the structural meaning of sequence alignment
-
2017436 Epub 1991/01/01
-
Sander C, Schneider R. Database of homology-derived protein structures and the structural meaning of sequence alignment. Proteins. 1991;9(1):56-68. Epub 1991/01/01. doi: 10.1002/prot.340090107 PMID: 2017436.
-
(1991)
Proteins
, vol.9
, Issue.1
, pp. 56-68
-
-
Sander, C.1
Schneider, R.2
-
56
-
-
0032987957
-
Phylogeny and polyphasic taxonomy of Caulobacter species. Proposal of Maricaulis gen. Nov. With Maricaulis maris (Poindexter) comb. Nov. As the type species, and emended description of the genera Brevundimonas and Caulobacter
-
10425763 Epub 1999/07/30
-
Abraham WR, Strompl C, Meyer H, Lindholst S, Moore ER, Christ R, et al. Phylogeny and polyphasic taxonomy of Caulobacter species. Proposal of Maricaulis gen. nov. with Maricaulis maris (Poindexter) comb. nov. as the type species, and emended description of the genera Brevundimonas and Caulobacter. Int J Syst Bacteriol. 1999;49 Pt 3:1053-73. Epub 1999/07/30. PMID: 10425763.
-
(1999)
Int J Syst Bacteriol.
, vol.49
, pp. 1053-1073
-
-
Abraham, W.R.1
Strompl, C.2
Meyer, H.3
Lindholst, S.4
Moore, E.R.5
Christ, R.6
-
57
-
-
0043122933
-
UniqueProt: Creating representative protein sequence sets
-
12824419 Epub 2003/06/26, PubMed Central PMCID: PMC169026
-
Mika S, Rost B. UniqueProt: Creating representative protein sequence sets. Nucleic Acids Res. 2003;31(13):3789-91. Epub 2003/06/26. PMID: 12824419; PubMed Central PMCID: PMC169026.
-
(2003)
Nucleic Acids Res.
, vol.31
, Issue.13
, pp. 3789-3791
-
-
Mika, S.1
Rost, B.2
-
58
-
-
0034084865
-
Who's your neighbor? New computational approaches for functional genomics
-
10835597 Epub 2000/06/03
-
Galperin MY, Koonin EV. Who's your neighbor? New computational approaches for functional genomics. Nat Biotechnol. 2000;18(6):609-13. Epub 2000/06/03. doi: 10.1038/76443 PMID: 10835597.
-
(2000)
Nat Biotechnol.
, vol.18
, Issue.6
, pp. 609-613
-
-
Galperin, M.Y.1
Koonin, E.V.2
-
59
-
-
0034530835
-
Using the COG database to improve gene recognition in complete genomes
-
11145426 Epub 2001/01/06
-
Natale DA, Galperin MY, Tatusov RL, Koonin EV. Using the COG database to improve gene recognition in complete genomes. Genetica. 2000;108(1):9-17. Epub 2001/01/06. PMID: 11145426.
-
(2000)
Genetica
, vol.108
, Issue.1
, pp. 9-17
-
-
Natale, D.A.1
Galperin, M.Y.2
Tatusov, R.L.3
Koonin, E.V.4
-
60
-
-
0031471870
-
Learning and understanding the Kruskal-Wallis one-way analysis-of-variancebyranks test for differences among three or more independent groups
-
9413454
-
Chan Y, Walmsley RP. Learning and understanding the Kruskal-Wallis one-way analysis-of-variancebyranks test for differences among three or more independent groups. Phys Ther. 1997;77(12):1755-62. PMID: 9413454.
-
(1997)
Phys Ther.
, vol.77
, Issue.12
, pp. 1755-1762
-
-
Chan, Y.1
Walmsley, R.P.2
-
61
-
-
84869797757
-
A note on power and sample size calculations for the Kruskal-Wallis test for ordered categorical data
-
23075015
-
Fan C, Zhang D. A note on power and sample size calculations for the Kruskal-Wallis test for ordered categorical data. Journal of biopharmaceutical statistics. 2012;22(6):1162-73. doi: 10.1080/10543406.2011.578313 PMID: 23075015.
-
(2012)
Journal of Biopharmaceutical Statistics
, vol.22
, Issue.6
, pp. 1162-1173
-
-
Fan, C.1
Zhang, D.2
-
62
-
-
0034912008
-
The basics of nonparametric statistics
-
12441458
-
Fitzgerald S, Dimitrov D, Rumrill P. The basics of nonparametric statistics. Work. 2001;16(3):287-92. PMID: 12441458.
-
(2001)
Work
, vol.16
, Issue.3
, pp. 287-292
-
-
Fitzgerald, S.1
Dimitrov, D.2
Rumrill, P.3
-
65
-
-
84896697950
-
Causal inference for Mann-Whitney-Wilcoxon rank sum and other nonparametric statistics
-
24132928
-
Wu P, Han Y, Chen T, Tu XM. Causal inference for Mann-Whitney-Wilcoxon rank sum and other nonparametric statistics. Statistics in medicine. 2014;33(8):1261-71. doi: 10.1002/sim.6026 PMID: 24132928.
-
(2014)
Statistics in Medicine
, vol.33
, Issue.8
, pp. 1261-1271
-
-
Wu, P.1
Han, Y.2
Chen, T.3
Tu, X.M.4
-
68
-
-
84863304598
-
R: A language and environment for statistical computing
-
Vienna, Austria
-
Team RC. R: A Language and Environment for Statistical Computing. In: Computing RFfS, editor. Vienna, Austria 2013.
-
(2013)
Computing RFfS
-
-
Team, R.C.1
-
69
-
-
2442679707
-
Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1
-
12872007 Epub 2003/07/23
-
Goo YA, Yi EC, Baliga NS, Tao WA, Pan M, Aebersold R, et al. Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1. Mol Cell Proteomics. 2003;2(8):506-24. Epub 2003/07/23. doi: 10.1074/mcp. M300044-MCP200 M300044-MCP200 [pii]. PMID: 12872007.
-
(2003)
Mol Cell Proteomics
, vol.2
, Issue.8
, pp. 506-524
-
-
Goo, Y.A.1
Yi, E.C.2
Baliga, N.S.3
Tao, W.A.4
Pan, M.5
Aebersold, R.6
-
70
-
-
0025276332
-
Haloarcula marismortui (Volcani) sp. Nov., Nom. Rev., an extremely halophilic bacterium from the Dead Sea
-
11536469 Epub 1990/04/01
-
Oren A, Ginzburg M, Ginzburg BZ, Hochstein LI, Volcani BE. Haloarcula marismortui (Volcani) sp. nov., nom. rev., an extremely halophilic bacterium from the Dead Sea. Int J Syst Bacteriol. 1990;40(2):209-10. Epub 1990/04/01. PMID: 11536469.
-
(1990)
Int J Syst Bacteriol.
, vol.40
, Issue.2
, pp. 209-210
-
-
Oren, A.1
Ginzburg, M.2
Ginzburg, B.Z.3
Hochstein, L.I.4
Volcani, B.E.5
-
71
-
-
33646927488
-
Quantitative proteomics of the archaeon Methanococcus maripaludis validated by microarray analysis and real time PCR
-
16489187 Epub 2006/02/21, PubMed Central PMCID: PMC2655211
-
Xia Q, Hendrickson EL, Zhang Y, Wang T, Taub F, Moore BC, et al. Quantitative proteomics of the archaeon Methanococcus maripaludis validated by microarray analysis and real time PCR. Mol Cell Proteomics. 2006;5(5):868-81. Epub 2006/02/21. doi: M500369-MCP200 [pii] doi: 10.1074/mcp. M500369-MCP200 PMID: 16489187; PubMed Central PMCID: PMC2655211.
-
(2006)
Mol Cell Proteomics
, vol.5
, Issue.5
, pp. 868-881
-
-
Xia, Q.1
Hendrickson, E.L.2
Zhang, Y.3
Wang, T.4
Taub, F.5
Moore, B.C.6
-
72
-
-
11244293766
-
Cloning, expression, and characterization of a glycoside hydrolase family 86 beta-agarase from a deep-sea Microbulbifer-like isolate
-
15490156 Epub 2004/10/19
-
Ohta Y, Hatada Y, Nogi Y, Li Z, Ito S, Horikoshi K. Cloning, expression, and characterization of a glycoside hydrolase family 86 beta-agarase from a deep-sea Microbulbifer-like isolate. Appl Microbiol Biotechnol. 2004;66(3):266-75. Epub 2004/10/19. doi: 10.1007/s00253-004-1757-5 PMID: 15490156.
-
(2004)
Appl Microbiol Biotechnol.
, vol.66
, Issue.3
, pp. 266-275
-
-
Ohta, Y.1
Hatada, Y.2
Nogi, Y.3
Li, Z.4
Ito, S.5
Horikoshi, K.6
-
73
-
-
84878940937
-
A decade and a half of protein intrinsic disorder: Biology still waits for physics
-
23553817 PubMed Central PMCID: PMC3690711
-
Uversky VN. A decade and a half of protein intrinsic disorder: biology still waits for physics. Protein Sci. 2013;22(6):693-724. doi: 10.1002/pro.2261 PMID: 23553817; PubMed Central PMCID: PMC3690711.
-
(2013)
Protein Sci.
, vol.22
, Issue.6
, pp. 693-724
-
-
Uversky, V.N.1
-
74
-
-
76249125068
-
Molecular evolution of the hyperthermophilic archaea of the Pyrococcus genus: Analysis of adaptation to different environmental conditions
-
20042074 Epub 2010/01/01, PubMed Central PMCID: PMC2816203
-
Gunbin KV, Afonnikov DA, Kolchanov NA. Molecular evolution of the hyperthermophilic archaea of the Pyrococcus genus: analysis of adaptation to different environmental conditions. BMC Genomics. 2009;10:639. Epub 2010/01/01. doi: 1471-2164-10-639 [pii] doi: 10.1186/1471-2164-10-639 PMID: 20042074; PubMed Central PMCID: PMC2816203.
-
(2009)
BMC Genomics
, vol.10
, pp. 639
-
-
Gunbin, K.V.1
Afonnikov, D.A.2
Kolchanov, N.A.3
-
75
-
-
33646832404
-
A fifth protein subunit Ph1496p elevates the optimum temperature for the ribonuclease P activity from Pyrococcus horikoshii OT3
-
16574071 Epub 2006/04/01
-
Fukuhara H, Kifusa M, Watanabe M, Terada A, Honda T, Numata T, et al. A fifth protein subunit Ph1496p elevates the optimum temperature for the ribonuclease P activity from Pyrococcus horikoshii OT3. Biochem Biophys Res Commun. 2006;343(3):956-64. Epub 2006/04/01. doi: S0006-291X (06) 00489-X [pii] doi: 10.1016/j.bbrc.2006.02.192 PMID: 16574071.
-
(2006)
Biochem Biophys Res Commun.
, vol.343
, Issue.3
, pp. 956-964
-
-
Fukuhara, H.1
Kifusa, M.2
Watanabe, M.3
Terada, A.4
Honda, T.5
Numata, T.6
-
76
-
-
0029826916
-
Aeropyrum pernix gen. Nov., Sp. Nov., a novel aerobic hyperthermophilic archaeon growing at temperatures up to 100 degrees C
-
8863437 Epub 1996/10/01
-
Sako Y, Nomura N, Uchida A, Ishida Y, Morii H, Koga Y, et al. Aeropyrum pernix gen. nov., sp. nov., a novel aerobic hyperthermophilic archaeon growing at temperatures up to 100 degrees C. Int J Syst Bacteriol. 1996;46(4):1070-7. Epub 1996/10/01. PMID: 8863437.
-
(1996)
Int J Syst Bacteriol.
, vol.46
, Issue.4
, pp. 1070-1077
-
-
Sako, Y.1
Nomura, N.2
Uchida, A.3
Ishida, Y.4
Morii, H.5
Koga, Y.6
-
77
-
-
0033616977
-
Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1
-
10382966 45-52, Epub 1999/06/26
-
Kawarabayasi Y, Hino Y, Horikawa H, Yamazaki S, Haikawa Y, Jin-no K, et al. Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1. DNA Res. 1999;6(2):83-101, 45-52. Epub 1999/06/26. PMID: 10382966.
-
(1999)
DNA Res.
, vol.6
, Issue.2
, pp. 83-101
-
-
Kawarabayasi, Y.1
Hino, Y.2
Horikawa, H.3
Yamazaki, S.4
Haikawa, Y.5
Jin-no, K.6
-
78
-
-
30344444775
-
Optimization of growth for the hyperthermophilic archaeon Aeropyrum pernix on a small-batch scale
-
16391661 Epub 2006/01/05
-
Milek I, Cigic B, Skrt M, Kaletunc G, Ulrih NP. Optimization of growth for the hyperthermophilic archaeon Aeropyrum pernix on a small-batch scale. Can J Microbiol. 2005;51(9):805-9. Epub 2006/01/05. doi: w05-060 [pii] doi: 10.1139/w05-060 PMID: 16391661.
-
(2005)
Can J Microbiol.
, vol.51
, Issue.9
, pp. 805-809
-
-
Milek, I.1
Cigic, B.2
Skrt, M.3
Kaletunc, G.4
Ulrih, N.P.5
-
79
-
-
80053293850
-
Mannitol production by Leuconostoc citreum KACC 91348P isolated from Kimchi
-
21952374 Epub 2011/09/29
-
Otgonbayar GE, Eom HJ, Kim BS, Ko JH, Han NS. Mannitol production by Leuconostoc citreum KACC 91348P isolated from Kimchi. J Microbiol Biotechnol. 21(9):968-71. Epub 2011/09/29. doi: JMB021-09-11 [pii]. PMID: 21952374.
-
J Microbiol Biotechnol.
, vol.21
, Issue.9
, pp. 968-971
-
-
Otgonbayar, G.E.1
Eom, H.J.2
Kim, B.S.3
Ko, J.H.4
Han, N.S.5
-
80
-
-
58149500610
-
Cold stability of intrinsically disordered proteins
-
19121309 Epub 2009/01/06
-
Tantos A, Friedrich P, Tompa P. Cold stability of intrinsically disordered proteins. FEBS Lett. 2009;583(2):465-9. Epub 2009/01/06. doi: S0014-5793 (08) 01040-5 [pii] doi: 10.1016/j.febslet.2008.12.054 PMID: 19121309.
-
(2009)
FEBS Lett.
, vol.583
, Issue.2
, pp. 465-469
-
-
Tantos, A.1
Friedrich, P.2
Tompa, P.3
-
81
-
-
0035102449
-
Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics
-
11238985 Epub 2001/03/10, PubMed Central PMCID: PMC99018
-
Makarova KS, Aravind L, Wolf YI, Tatusov RL, Minton KW, Koonin EV, et al. Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics. Microbiol Mol Biol Rev. 2001;65(1):44-79. Epub 2001/03/10. doi: 10.1128/MMBR.65.1. 44-79.2001 PMID: 11238985; PubMed Central PMCID: PMC99018.
-
(2001)
Microbiol Mol Biol Rev.
, vol.65
, Issue.1
, pp. 44-79
-
-
Makarova, K.S.1
Aravind, L.2
Wolf, Y.I.3
Tatusov, R.L.4
Minton, K.W.5
Koonin, E.V.6
-
82
-
-
28144449309
-
Deinococcus radiodurans-the consummate survivor
-
16261171 Epub 2005/11/02
-
Cox MM, Battista JR. Deinococcus radiodurans-the consummate survivor. Nat Rev Microbiol. 2005;3(11):882-92. Epub 2005/11/02. doi: nrmicro1264 [pii] doi: 10.1038/nrmicro1264 PMID: 16261171.
-
(2005)
Nat Rev Microbiol.
, vol.3
, Issue.11
, pp. 882-892
-
-
Cox, M.M.1
Battista, J.R.2
-
83
-
-
0034327380
-
Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis
-
11058132 Epub 2000/11/01, PubMed Central PMCID: PMC113120
-
Takami H, Nakasone K, Takaki Y, Maeno G, Sasaki R, Masui N, et al. Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis. Nucleic Acids Res. 2000;28(21):4317-31. Epub 2000/11/01. PMID: 11058132; PubMed Central PMCID: PMC113120.
-
(2000)
Nucleic Acids Res.
, vol.28
, Issue.21
, pp. 4317-4331
-
-
Takami, H.1
Nakasone, K.2
Takaki, Y.3
Maeno, G.4
Sasaki, R.5
Masui, N.6
-
84
-
-
0036842611
-
Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis
-
12368813 Epub 2002/10/09
-
Heidelberg JF, Paulsen IT, Nelson KE, Gaidos EJ, Nelson WC, Read TD, et al. Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis. Nat Biotechnol. 2002;20(11):1118-23. Epub 2002/10/09. doi: 10.1038/nbt749 nbt749 [pii]. PMID: 12368813.
-
(2002)
Nat Biotechnol.
, vol.20
, Issue.11
, pp. 1118-1123
-
-
Heidelberg, J.F.1
Paulsen, I.T.2
Nelson, K.E.3
Gaidos, E.J.4
Nelson, W.C.5
Read, T.D.6
-
85
-
-
33645833212
-
Adhesion of single bacterial cells in the micronewton range
-
16585522 Epub 2006/04/06, PubMed Central PMCID: PMC1458647
-
Tsang PH, Li G, Brun YV, Freund LB, Tang JX. Adhesion of single bacterial cells in the micronewton range. Proc Natl Acad Sci USA. 2006;103(15):5764-8. Epub 2006/04/06. doi: 10.1073/pnas. 0601705103 PMID: 16585522; PubMed Central PMCID: PMC1458647.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, Issue.15
, pp. 5764-5768
-
-
Tsang, P.H.1
Li, G.2
Brun, Y.V.3
Freund, L.B.4
Tang, J.X.5
-
86
-
-
84941981768
-
Bacterium makes nature's strongest glue
-
Hopkin M. Bacterium makes nature's strongest glue. Nature. 2006.
-
(2006)
Nature
-
-
Hopkin, M.1
-
87
-
-
84857006793
-
High-throughput proteogenomics of Ruegeria pomeroyi: Seeding a better genomic annotation for the whole marine Roseobacter clade
-
22336032 Epub 2012/02/18, PubMed Central PMCID: PMC3305630
-
Christie-Oleza JA, Miotello G, Armengaud J. High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade. BMC Genomics. 13:73. Epub 2012/02/18. doi: 1471-2164-13-73 [pii] doi: 10.1186/1471-2164-13-73 PMID: 22336032; PubMed Central PMCID: PMC3305630.
-
BMC Genomics
, vol.13
, pp. 73
-
-
Christie-Oleza, J.A.1
Miotello, G.2
Armengaud, J.3
-
88
-
-
34248231288
-
Taxonomic evaluation of the genera Ruegeria and Silicibacter: A proposal to transfer the genus Silicibacter Petursdottir and Kristjansson 1999 to the genus Ruegeria Uchino et al. 1999
-
Yi H, Lim YW, Chun J. Taxonomic evaluation of the genera Ruegeria and Silicibacter: a proposal to transfer the genus Silicibacter Petursdottir and Kristjansson 1999 to the genus Ruegeria Uchino et al. 1999. IJSEM. 2007;57(4):815-9. doi: 10.1099/ijs.0.64568-0
-
(2007)
IJSEM
, vol.57
, Issue.4
, pp. 815-819
-
-
Yi, H.1
Lim, Y.W.2
Chun, J.3
-
89
-
-
0032962457
-
Twilight zone of protein sequence alignments
-
10195279 Epub 1999/04/09
-
Rost B. Twilight zone of protein sequence alignments. Protein Eng. 1999;12(2):85-94. Epub 1999/04/09. PMID: 10195279.
-
(1999)
Protein Eng.
, vol.12
, Issue.2
, pp. 85-94
-
-
Rost, B.1
-
90
-
-
3042796482
-
Substitution of aspartic acid with glutamic acid increases the unfolding transition temperature of a protein
-
15240133 Epub 2004/07/09
-
Lee DY, Kim KA, Yu YG, Kim KS. Substitution of aspartic acid with glutamic acid increases the unfolding transition temperature of a protein. Biochem Biophys Res Commun. 2004;320(3):900-6. Epub 2004/07/09. doi: 10.1016/j.bbrc.2004.06.031 S0006291X0401294X [pii]. PMID: 15240133.
-
(2004)
Biochem Biophys Res Commun.
, vol.320
, Issue.3
, pp. 900-906
-
-
Lee, D.Y.1
Kim, K.A.2
Yu, Y.G.3
Kim, K.S.4
-
91
-
-
0000929505
-
The hydrophobic moment detects periodicity in protein hydrophobicity
-
6582470 Epub 1984/01/01, PubMed Central PMCID: PMC344626
-
Eisenberg D, Weiss RM, Terwilliger TC. The hydrophobic moment detects periodicity in protein hydrophobicity. Proc Natl Acad Sci USA. 1984;81(1):140-4. Epub 1984/01/01. PMID: 6582470; PubMed Central PMCID: PMC344626.
-
(1984)
Proc Natl Acad Sci U S A
, vol.81
, Issue.1
, pp. 140-144
-
-
Eisenberg, D.1
Weiss, R.M.2
Terwilliger, T.C.3
-
92
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
7108955 Epub 1982/05/05
-
Kyte J, Doolittle RF. A simple method for displaying the hydropathic character of a protein. J Mol Biol. 1982;157(1):105-32. Epub 1982/05/05. doi: 0022-2836 (82) 90515-0 [pii]. PMID: 7108955.
-
(1982)
J Mol Biol.
, vol.157
, Issue.1
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
93
-
-
0018784438
-
Surface and inside volumes in globular proteins
-
763335 Epub 1979/02/08
-
Janin J. Surface and inside volumes in globular proteins. Nature. 1979;277(5696):491-2. Epub 1979/02/08. PMID: 763335.
-
(1979)
Nature
, vol.277
, Issue.5696
, pp. 491-492
-
-
Janin, J.1
-
94
-
-
84890353413
-
Protein expansion is primarily due to indels in intrinsically disordered regions
-
24037790
-
Light S, Sagit R, Sachenkova O, Ekman D, Elofsson A. Protein expansion is primarily due to indels in intrinsically disordered regions. Molecular biology and evolution. 2013;30(12):2645-53. doi: 10.1093/molbev/mst157 PMID: 24037790.
-
(2013)
Molecular Biology and Evolution
, vol.30
, Issue.12
, pp. 2645-2653
-
-
Light, S.1
Sagit, R.2
Sachenkova, O.3
Ekman, D.4
Elofsson, A.5
-
95
-
-
33645778262
-
Conservation of intrinsic disorder in protein domains and families: I. A database of conserved predicted disordered regions
-
16602695 PubMed Central PMCID: PMC2543136
-
Chen JW, Romero P, Uversky VN, Dunker AK. Conservation of intrinsic disorder in protein domains and families: I. A database of conserved predicted disordered regions. J Proteome Res. 2006;5(4):879-87. doi: 10.1021/pr060048x PMID: 16602695; PubMed Central PMCID: PMC2543136.
-
(2006)
J Proteome Res.
, vol.5
, Issue.4
, pp. 879-887
-
-
Chen, J.W.1
Romero, P.2
Uversky, V.N.3
Dunker, A.K.4
-
96
-
-
33645753974
-
Conservation of intrinsic disorder in protein domains and families: II. Functions of conserved disorder
-
16602696 PubMed Central PMCID: PMC2533134
-
Chen JW, Romero P, Uversky VN, Dunker AK. Conservation of intrinsic disorder in protein domains and families: II. functions of conserved disorder. J Proteome Res. 2006;5(4):888-98. doi: 10.1021/pr060049p PMID: 16602696; PubMed Central PMCID: PMC2533134.
-
(2006)
J Proteome Res.
, vol.5
, Issue.4
, pp. 888-898
-
-
Chen, J.W.1
Romero, P.2
Uversky, V.N.3
Dunker, A.K.4
-
97
-
-
33847674551
-
Rapid evolution exposes the boundaries of domain structure and function in natively unfolded FG nucleoporins
-
17079785
-
Denning DP, Rexach MF. Rapid evolution exposes the boundaries of domain structure and function in natively unfolded FG nucleoporins. Mol Cell Proteomics. 2007;6(2):272-82. doi: 10.1074/mcp. M600309-MCP200 PMID: 17079785.
-
(2007)
Mol Cell Proteomics
, vol.6
, Issue.2
, pp. 272-282
-
-
Denning, D.P.1
Rexach, M.F.2
-
98
-
-
0036017388
-
Evolutionary rate heterogeneity in proteins with long disordered regions
-
12165847
-
Brown CJ, Takayama S, Campen AM, Vise P, Marshall TW, Oldfield CJ, et al. Evolutionary rate heterogeneity in proteins with long disordered regions. Journal of molecular evolution. 2002;55(1):104-10. doi: 10.1007/s00239-001-2309-6 PMID: 12165847.
-
(2002)
Journal of Molecular Evolution
, vol.55
, Issue.1
, pp. 104-110
-
-
Brown, C.J.1
Takayama, S.2
Campen, A.M.3
Vise, P.4
Marshall, T.W.5
Oldfield, C.J.6
-
99
-
-
0037008836
-
Aerobiosis increases the genomic guanine plus cytosine content (GC%) in prokaryotes
-
12187379
-
Naya H, Romero H, Zavala A, Alvarez B, Musto H. Aerobiosis increases the genomic guanine plus cytosine content (GC%) in prokaryotes. Journal of molecular evolution. 2002;55(3):260-4. doi: 10. 1007/s00239-002-2323-3 PMID: 12187379.
-
(2002)
Journal of Molecular Evolution
, vol.55
, Issue.3
, pp. 260-264
-
-
Naya, H.1
Romero, H.2
Zavala, A.3
Alvarez, B.4
Musto, H.5
-
100
-
-
79952081209
-
Bioinformatics analysis of disordered proteins in prokaryotes
-
21366926 PubMed Central PMCID: PMC3062596
-
Pavlovic-Lazetic GM, Mitic NS, Kovacevic JJ, Obradovic Z, Malkov SN, Beljanski MV. Bioinformatics analysis of disordered proteins in prokaryotes. BMC Bioinformatics. 2011;12:66. doi: 10.1186/1471-2105-12-66 PMID: 21366926; PubMed Central PMCID: PMC3062596.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 66
-
-
Pavlovic-Lazetic, G.M.1
Mitic, N.S.2
Kovacevic, J.J.3
Obradovic, Z.4
Malkov, S.N.5
Beljanski, M.V.6
-
101
-
-
0035022941
-
Intrinsically disordered protein
-
11381529
-
Dunker AK, Lawson JD, Brown CJ, Williams RM, Romero P, Oh JS, et al. Intrinsically disordered protein. Journal of molecular graphics & modelling. 2001;19(1):26-59. PMID: 11381529.
-
(2001)
Journal of Molecular Graphics & Modelling
, vol.19
, Issue.1
, pp. 26-59
-
-
Dunker, A.K.1
Lawson, J.D.2
Brown, C.J.3
Williams, R.M.4
Romero, P.5
Oh, J.S.6
-
102
-
-
0027291015
-
Prediction of protein secondary structure at better than 70% accuracy
-
8345525
-
Rost B, Sander C. Prediction of protein secondary structure at better than 70% accuracy. J Mol Biol. 1993;232(2):584-99. doi: 10.1006/jmbi.1993.1413 PMID: 8345525.
-
(1993)
J Mol Biol.
, vol.232
, Issue.2
, pp. 584-599
-
-
Rost, B.1
Sander, C.2
|