-
1
-
-
0042379959
-
Simple consensus procedures are effective and sufficient in secondary structure prediction
-
Albrecht, M. et al. (2003) Simple consensus procedures are effective and sufficient in secondary structure prediction. Protein Eng., 16, 459-462.
-
(2003)
Protein Eng.
, vol.16
, pp. 459-462
-
-
Albrecht, M.1
-
2
-
-
0034069495
-
Gene Ontology: Tool for the unification of biology. The Gene Ontology consortium
-
Ashburner, M. et al. (2000) Gene Ontology: tool for the unification of biology. The Gene Ontology consortium. Nat. Genet., 25, 25-29.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
-
3
-
-
79851508882
-
Bringing order to protein disorder through comparative genomics and genetic interactions
-
Bellay, J. et al. (2011) Bringing order to protein disorder through comparative genomics and genetic interactions. Genome Biol., 12, R14.
-
(2011)
Genome Biol.
, vol.12
, pp. R14
-
-
Bellay, J.1
-
4
-
-
84865129593
-
MobiDB: A comprehensive database of intrinsic protein disorder annotations
-
Di Domenico, T. et al. (2012) MobiDB: a comprehensive database of intrinsic protein disorder annotations. Bioinformatics, 28, 2080-2081.
-
(2012)
Bioinformatics
, vol.28
, pp. 2080-2081
-
-
Di Domenico, T.1
-
5
-
-
33750999318
-
Disorder and sequence repeats in hub proteins and their implications for network evolution
-
Dosztanyi, Z. et al. (2006) Disorder and sequence repeats in hub proteins and their implications for network evolution. J. Proteome Res., 5, 2985-2995.
-
(2006)
J. Proteome Res.
, vol.5
, pp. 2985-2995
-
-
Dosztanyi, Z.1
-
6
-
-
14844342815
-
The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins
-
Dosztanyi, Z. et al. (2005) The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins. J. Mol. Biol., 347, 827-839.
-
(2005)
J. Mol. Biol.
, vol.347
, pp. 827-839
-
-
Dosztanyi, Z.1
-
7
-
-
0037188377
-
Intrinsic disorder and protein function
-
Dunker, A.K. et al. (2002) Intrinsic disorder and protein function. Biochemistry, 41, 6573-6582.
-
(2002)
Biochemistry
, vol.41
, pp. 6573-6582
-
-
Dunker, A.K.1
-
8
-
-
0034570889
-
Intrinsic protein disorder in complete genomes
-
Dunker, A.K. et al. (2000) Intrinsic protein disorder in complete genomes. Genome Inform. Workshop Genome Inform., 11, 161-171.
-
(2000)
Genome Inform. Workshop Genome Inform.
, vol.11
, pp. 161-171
-
-
Dunker, A.K.1
-
9
-
-
0034867975
-
The protein trinity-linking function and disorder
-
Dunker, A.K. and Obradovic, Z. (2001) The protein trinity-linking function and disorder. Nat. Biotechnol., 19, 805-806.
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 805-806
-
-
Dunker, A.K.1
Obradovic, Z.2
-
10
-
-
84874545393
-
DNdisorder: Predicting protein disorder using boosting and deep networks
-
Eickholt, J. and Cheng, J. (2013) DNdisorder: predicting protein disorder using boosting and deep networks. BMC Bioinformatics, 14, 88.
-
(2013)
BMC Bioinformatics
, vol.14
, pp. 88
-
-
Eickholt, J.1
Cheng, J.2
-
11
-
-
33845990277
-
Prediction of amyloidogenic and disordered regions in protein chains
-
Galzitskaya, O.V. et al. (2006) Prediction of amyloidogenic and disordered regions in protein chains. PLoS Comput. Biol., 2, e177.
-
(2006)
PLoS Comput. Biol.
, vol.2
, pp. e177
-
-
Galzitskaya, O.V.1
-
12
-
-
34548567232
-
POODLE-L: A two-level SVM prediction system for reliably predicting long disordered regions
-
Hirose, S. et al. (2007) POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions. Bioinformatics, 23, 2046-2053.
-
(2007)
Bioinformatics
, vol.23
, pp. 2046-2053
-
-
Hirose, S.1
-
13
-
-
34547588389
-
PrDOS: Prediction of disordered protein regions from amino acid sequence
-
Ishida, T. and Kinoshita, K. (2007) PrDOS: prediction of disordered protein regions from amino acid sequence. Nucleic Acids Res., 35, W460-W464.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. W460-W464
-
-
Ishida, T.1
Kinoshita, K.2
-
14
-
-
44349192171
-
Prediction of disordered regions in proteins based on the meta approach
-
Ishida, T. and Kinoshita, K. (2008) Prediction of disordered regions in proteins based on the meta approach. Bioinformatics, 24, 1344-1348.
-
(2008)
Bioinformatics
, vol.24
, pp. 1344-1348
-
-
Ishida, T.1
Kinoshita, K.2
-
16
-
-
0042622240
-
GlobPlot: Exploring protein sequences for globularity and disorder
-
Linding, R. et al. (2003a) GlobPlot: exploring protein sequences for globularity and disorder. Nucleic Acids Res., 31, 3701-3708.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3701-3708
-
-
Linding, R.1
-
17
-
-
0242458482
-
Protein disorder prediction: Implications for structural proteomics
-
Linding, R. et al. (2003b) Protein disorder prediction: implications for structural proteomics. Structure, 11, 1453-1459.
-
(2003)
Structure
, vol.11
, pp. 1453-1459
-
-
Linding, R.1
-
18
-
-
78149244240
-
MOBI: A web server to define and visualize structural mobility in NMR protein ensembles
-
Martin, A.J.M. et al. (2010) MOBI: a web server to define and visualize structural mobility in NMR protein ensembles. Bioinformatics, 26, 2916-2917.
-
(2010)
Bioinformatics
, vol.26
, pp. 2916-2917
-
-
Martin, A.J.M.1
-
19
-
-
77956502766
-
Improved sequence-based prediction of disordered regions with multilayer fusion of multiple information sources
-
Mizianty, M.J. et al. (2010) Improved sequence-based prediction of disordered regions with multilayer fusion of multiple information sources. Bioinformatics, 26, i489-i496.
-
(2010)
Bioinformatics
, vol.26
, pp. i489-i496
-
-
Mizianty, M.J.1
-
20
-
-
79958825533
-
In-silico prediction of disorder content using hybrid sequence representation
-
Mizianty, M.J. et al. (2011) In-silico prediction of disorder content using hybrid sequence representation. BMC Bioinformatics, 12, 245.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 245
-
-
Mizianty, M.J.1
-
21
-
-
70349705654
-
Influence of sequence changes and environment on intrinsically disordered proteins
-
Mohan, A. et al. (2009) Influence of sequence changes and environment on intrinsically disordered proteins. PLoS Comput. Biol., 5, e1000497.
-
(2009)
PLoS Comput. Biol.
, vol.5
, pp. e1000497
-
-
Mohan, A.1
-
22
-
-
84892954999
-
Assessment of protein disorder region predictions in CASP10
-
Monastyrskyy, B. et al. (2014) Assessment of protein disorder region predictions in CASP10. Proteins, 82 (Suppl. 2), 127-137.
-
(2014)
Proteins
, vol.82
, pp. 127-137
-
-
Monastyrskyy, B.1
-
23
-
-
33745289067
-
Length-dependent prediction of protein intrinsic disorder
-
Peng, K. et al. (2006) Length-dependent prediction of protein intrinsic disorder. BMC Bioinformatics, 7, 208.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 208
-
-
Peng, K.1
-
24
-
-
24044515001
-
FoldIndex: A simple tool to predict whether a given protein sequence is intrinsically unfolded
-
Prilusky, J. et al. (2005) FoldIndex: a simple tool to predict whether a given protein sequence is intrinsically unfolded. Bioinformatics, 21, 3435-3438.
-
(2005)
Bioinformatics
, vol.21
, pp. 3435-3438
-
-
Prilusky, J.1
-
25
-
-
0035188314
-
Sequence complexity of disordered protein
-
Romero, P. et al. (2001) Sequence complexity of disordered protein. Proteins, 42, 38-48.
-
(2001)
Proteins
, vol.42
, pp. 38-48
-
-
Romero, P.1
-
26
-
-
84876529328
-
The RCSB Protein Data Bank: New resources for research and education
-
Rose, P.W. et al. (2013) The RCSB Protein Data Bank: new resources for research and education. Nucleic Acids Res., 41, D475-D482.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D475-D482
-
-
Rose, P.W.1
-
27
-
-
0035782925
-
Review: Protein secondary structure prediction continues to rise
-
Rost, B. (2001) Review: protein secondary structure prediction continues to rise. J. Struct. Biol., 134, 204-218.
-
(2001)
J. Struct. Biol.
, vol.134
, pp. 204-218
-
-
Rost, B.1
-
28
-
-
84885949386
-
Improved disorder prediction by combination of orthogonal approaches
-
Schlessinger, A. et al. (2009) Improved disorder prediction by combination of orthogonal approaches. PloS One, 4, e4433.
-
(2009)
PloS One
, vol.4
, pp. e4433
-
-
Schlessinger, A.1
-
29
-
-
79958059909
-
Protein disorder-A breakthrough invention of evolution?
-
Schlessinger, A. et al. (2011) Protein disorder-A breakthrough invention of evolution? Curr. Opin. Struct. Biol., 21, 412-418.
-
(2011)
Curr. Opin. Struct. Biol.
, vol.21
, pp. 412-418
-
-
Schlessinger, A.1
-
30
-
-
33846099868
-
DisProt: The database of disordered proteins
-
Sickmeier, M. et al. (2007) DisProt: the database of disordered proteins. Nucleic Acids Res., 35, D786-D793.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. D786-D793
-
-
Sickmeier, M.1
-
31
-
-
84860833500
-
Reorganizing the protein space at the Universal Protein Resource (UniProt)
-
The UniProt Consortium. (2012) Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Res., 40, D71-D75.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D71-D75
-
-
-
32
-
-
65249102824
-
Close encounters of the third kind: Disordered domains and the interactions of proteins
-
Tompa, P. et al. (2009) Close encounters of the third kind: disordered domains and the interactions of proteins. BioEssays, 31, 328-335.
-
(2009)
BioEssays
, vol.31
, pp. 328-335
-
-
Tompa, P.1
-
33
-
-
0036803243
-
Intrinsically unstructured proteins
-
Tompa, P. (2002) Intrinsically unstructured proteins. Trends Biochem. Sci., 27, 527-533.
-
(2002)
Trends Biochem. Sci.
, vol.27
, pp. 527-533
-
-
Tompa, P.1
-
34
-
-
84876579771
-
SIFTS: Structure integration with function, taxonomy and sequences resource
-
Velankar, S. et al. (2013) SIFTS: structure integration with function, taxonomy and sequences resource. Nucleic Acids Res., 41, D483-D489.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D483-D489
-
-
Velankar, S.1
-
35
-
-
0041418213
-
Flavors of protein disorder
-
Vucetic, S. et al. (2003) Flavors of protein disorder. Proteins, 52, 573-584.
-
(2003)
Proteins
, vol.52
, pp. 573-584
-
-
Vucetic, S.1
-
36
-
-
79959956361
-
CSpritz: Accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs
-
Walsh, I. et al. (2011) CSpritz: accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs. Nucleic Acids Res., 39, W190-W196.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. W190-W196
-
-
Walsh, I.1
-
37
-
-
84857170967
-
ESpritz: Accurate and fast prediction of protein disorder
-
Walsh, I. et al. (2012) ESpritz: accurate and fast prediction of protein disorder. Bioinformatics, 28, 503-509.
-
(2012)
Bioinformatics
, vol.28
, pp. 503-509
-
-
Walsh, I.1
-
38
-
-
1542358787
-
Prediction and functional analysis of native disorder in proteins from the three kingdoms of life
-
Ward, J.J. et al. (2004) Prediction and functional analysis of native disorder in proteins from the three kingdoms of life. J. Mol. Biol., 337, 635-645.
-
(2004)
J. Mol. Biol.
, vol.337
, pp. 635-645
-
-
Ward, J.J.1
-
39
-
-
0028501914
-
Non-globular domains in protein sequences: Automated segmentation using complexity measures
-
Wootton, J.C. (1994) Non-globular domains in protein sequences: automated segmentation using complexity measures. Comput. Chem., 18, 269-285.
-
(1994)
Comput. Chem.
, vol.18
, pp. 269-285
-
-
Wootton, J.C.1
-
40
-
-
0032749078
-
Intrinsically unstructured proteins: Re-Assessing the protein structure-function paradigm
-
Wright, P.E. and Dyson, H.J. (1999) Intrinsically unstructured proteins: re-Assessing the protein structure-function paradigm. J. Mol. Biol., 293, 321-331.
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 321-331
-
-
Wright, P.E.1
Dyson, H.J.2
-
42
-
-
72949087534
-
Analysis of structured and intrinsically disordered regions of transmembrane proteins
-
Xue, B. et al. (2009) Analysis of structured and intrinsically disordered regions of transmembrane proteins. Mol. Biosyst., 5, 1688-1702.
-
(2009)
Mol. Biosyst.
, vol.5
, pp. 1688-1702
-
-
Xue, B.1
-
43
-
-
76849087968
-
PONDR-FIT: A meta-predictor of intrinsically disordered amino acids
-
Xue, B. et al. (2010) PONDR-FIT: a meta-predictor of intrinsically disordered amino acids. Biochim. Biophys. Acta, 1804, 996-1010.
-
(2010)
Biochim. Biophys. Acta
, vol.1804
, pp. 996-1010
-
-
Xue, B.1
-
44
-
-
84903954385
-
Structural disorder in viral proteins
-
Xue, B. et al. (2014) Structural disorder in viral proteins. Chem. Rev., 114, 6880-6911.
-
(2014)
Chem. Rev.
, vol.114
, pp. 6880-6911
-
-
Xue, B.1
-
45
-
-
20744437001
-
RONN: The bio-basis function neural network technique applied to the detection of natively disordered regions in proteins
-
Yang, Z.R. et al. (2005) RONN: the bio-basis function neural network technique applied to the detection of natively disordered regions in proteins. Bioinformatics, 21, 3369-3376.
-
(2005)
Bioinformatics
, vol.21
, pp. 3369-3376
-
-
Yang, Z.R.1
-
46
-
-
0033081846
-
A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment
-
Zemla, A. et al. (1999) A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment. Proteins, 34, 220-223.
-
(1999)
Proteins
, vol.34
, pp. 220-223
-
-
Zemla, A.1
|