메뉴 건너뛰기




Volumn 53, Issue 10, 2015, Pages 3195-3203

Development of a multilocus sequence typing scheme for molecular typing of mycoplasma pneumoniae

Author keywords

[No Author keywords available]

Indexed keywords

ADK GENE; ARCC GENE; ARTICLE; ATPA GENE; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CONTROLLED STUDY; DNA POLYMORPHISM; GENE CLUSTER; GMK GENE; GYRB GENE; INTERMETHOD COMPARISON; MOLECULAR TYPING; MULTILOCUS SEQUENCE TYPING; MYCOPLASMA PNEUMONIAE; NONHUMAN; PGM GENE; PHYLOGENY; PPA GENE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; VARIABLE NUMBER OF TANDEM REPEAT; CLASSIFICATION; CLUSTER ANALYSIS; ESSENTIAL GENE; EVALUATION STUDY; GENETICS; GENOMIC INSTABILITY; GENOTYPE; HUMAN; ISOLATION AND PURIFICATION; MICROBIOLOGY; MYCOPLASMOSIS; PROCEDURES;

EID: 84941985549     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.01301-15     Document Type: Article
Times cited : (43)

References (40)
  • 1
    • 5644300391 scopus 로고    scopus 로고
    • Mycoplasma pneumoniae and its role as a human pathogen
    • Waites K, Talkington D. 2004. Mycoplasma pneumoniae and its role as a human pathogen. Clin Microbiol Rev 17:697-728. http://dx. doi. org/10 . 1128/CMR. 17. 4. 697-728. 2004.
    • (2004) Clin Microbiol Rev , vol.17 , pp. 697-728
    • Waites, K.1    Talkington, D.2
  • 2
    • 84900486332 scopus 로고    scopus 로고
    • Antibody responses to Mycoplasma pneumoniae: Role in pathogenesis and diagnosis of encephalitis?
    • Meyer Sauteur P, Jacobs B, Spuesens E, Jacobs E, Nadal D, Vink C, van Rossum AMC. 2014. Antibody responses to Mycoplasma pneumoniae: role in pathogenesis and diagnosis of encephalitis? PLoS Pathog 10: e1003983. http://dx. doi. org/10. 1371/journal. ppat. 1003983.
    • (2014) PLoS Pathog , vol.10 , pp. e1003983
    • Meyer Sauteur, P.1    Jacobs, B.2    Spuesens, E.3    Jacobs, E.4    Nadal, D.5    Vink, C.6    Van Rossum, A.M.C.7
  • 5
    • 12444277265 scopus 로고    scopus 로고
    • Microbiological profile of community-acquired pneumonia in adults over the last 20 years
    • Howard LS, Sillis M, Pasteur MC, Kamath AV, Harrison BD. 2005. Microbiological profile of community-acquired pneumonia in adults over the last 20 years. J Infect 50:107-113. http://dx. doi. org/10. 1016/j. jinf. 2004 . 05. 003.
    • (2005) J Infect , vol.50 , pp. 107-113
    • Howard, L.S.1    Sillis, M.2    Pasteur, M.C.3    Kamath, A.V.4    Harrison, B.D.5
  • 6
    • 84856983162 scopus 로고    scopus 로고
    • Increased detection of Mycoplasma pneumoniae infection in children in England and Wales, October 2011 to January 2012
    • Chalker V, Stocki T, Litt D, Bermingham A, Watson J, Fleming D, Harrison T. 2012. Increased detection of Mycoplasma pneumoniae infection in children in England and Wales, October 2011 to January 2012. Euro Surveill 17:pii-20081. http://www. eurosurveillance. org /ViewArticle. aspx?ArticleId-20081.
    • (2012) Euro Surveill , vol.17
    • Chalker, V.1    Stocki, T.2    Litt, D.3    Bermingham, A.4    Watson, J.5    Fleming, D.6    Harrison, T.7
  • 7
    • 84857028910 scopus 로고    scopus 로고
    • Mycoplasma pneumoniae: Now in the focus of clinicians and epidemiologists
    • Jacobs E. 2012. Mycoplasma pneumoniae: now in the focus of clinicians and epidemiologists. Euro Surveill 17:pii-20084. http://www . eurosurveillance. org/ViewArticle. aspx?ArticleId-20084.
    • (2012) Euro Surveill , vol.17
    • Jacobs, E.1
  • 8
    • 84928902820 scopus 로고    scopus 로고
    • Prevalence and correlation of infectious agents in hospitalized children with acute respiratory tract infections in central China
    • Liu J, Ai H, Xiong Y, Li F, Wen Z, Liu W, Li T, Qin K, Wu J, Liu Y. 2015. Prevalence and correlation of infectious agents in hospitalized children with acute respiratory tract infections in central China. PLoS One 10:e0119170. http://dx. doi. org/10. 1371/journal. pone. 0119170.
    • (2015) PLoS One , vol.10 , pp. e0119170
    • Liu, J.1    Ai, H.2    Xiong, Y.3    Li, F.4    Wen, Z.5    Liu, W.6    Li, T.7    Qin, K.8    Wu, J.9    Liu, Y.10
  • 9
    • 0013678992 scopus 로고    scopus 로고
    • Epidemiology of Mycoplasma pneumoniae infections in Poland: 28 years of surveillance in Warsaw 1970-1997
    • Rastawicki W, Kaluzewski S, Jagielski M, Gierczyski R. 1998. Epidemiology of Mycoplasma pneumoniae infections in Poland: 28 years of surveillance in Warsaw 1970-1997. Euro Surveill 3:99-100. http://www . eurosurveillance. org/ViewArticle. aspx?ArticleId-95.
    • (1998) Euro Surveill , vol.3 , pp. 99-100
    • Rastawicki, W.1    Kaluzewski, S.2    Jagielski, M.3    Gierczyski, R.4
  • 12
    • 0034051472 scopus 로고    scopus 로고
    • Genotyping of Mycoplasma pneumoniae clinical isolates reveals eight P1 subtypes within two genomic groups
    • Dorigo-Zetsma JW, Dankert J, Zaat SAJ. 2000. Genotyping of Mycoplasma pneumoniae clinical isolates reveals eight P1 subtypes within two genomic groups. J Clin Microbiol 38:965-970.
    • (2000) J Clin Microbiol , vol.38 , pp. 965-970
    • Dorigo-Zetsma, J.W.1    Dankert, J.2    Zaat, S.A.J.3
  • 13
    • 0030068627 scopus 로고    scopus 로고
    • Epidemiological study of Mycoplasma pneumoniae infections in Japan based on PCR-restriction fragment length polymorphism of the P1 cytadhesin gene
    • Sasaki T, Kenri T, Okazaki N, Iseki M, Yamashita R, Shintani M, Sasaki Y, Yayoshi M. 1996. Epidemiological study of Mycoplasma pneumoniae infections in Japan based on PCR-restriction fragment length polymorphism of the P1 cytadhesin gene. J Clin Microbiol 34:447-449.
    • (1996) J Clin Microbiol , vol.34 , pp. 447-449
    • Sasaki, T.1    Kenri, T.2    Okazaki, N.3    Iseki, M.4    Yamashita, R.5    Shintani, M.6    Sasaki, Y.7    Yayoshi, M.8
  • 14
    • 78149247808 scopus 로고    scopus 로고
    • Subtypes and variants of Mycoplasma pneumoniae: Local and temporal changes in Germany 2003-2006 and absence of a correlation between the genotype in the respiratory tract and the occurrence of genotype-specific antibodies in the sera of infected patients
    • Dumke R, Von Baum H, Luck PC, Jacobs E. 2010. Subtypes and variants of Mycoplasma pneumoniae: local and temporal changes in Germany 2003-2006 and absence of a correlation between the genotype in the respiratory tract and the occurrence of genotype-specific antibodies in the sera of infected patients. Epidemiol Infect 138:1829-1837. http://dx. doi . org/10. 1017/S0950268810000622.
    • (2010) Epidemiol Infect , vol.138 , pp. 1829-1837
    • Dumke, R.1    Von Baum, H.2    Luck, P.C.3    Jacobs, E.4
  • 15
    • 33746191688 scopus 로고    scopus 로고
    • Culture-independent molecular subtyping of Mycoplasma pneumoniae in clinical samples
    • Dumke R, Lück PC, Noppen C, Schaefer C, von Baum H, Marre R, Jacobs E. 2006. Culture-independent molecular subtyping of Mycoplasma pneumoniae in clinical samples. J Clin Microbiol 44:2567-2570. http://dx . doi. org/10. 1128/JCM. 00495-06.
    • (2006) J Clin Microbiol , vol.44 , pp. 2567-2570
    • Dumke, R.1    Lück, P.C.2    Noppen, C.3    Schaefer, C.4    Von Baum, H.5    Marre, R.6    Jacobs, E.7
  • 16
    • 65249157907 scopus 로고    scopus 로고
    • Development of multiple-locus variable-number tandemrepeat analysis for molecular typing of Mycoplasma pneumoniae
    • Dégrange S, Cazanave C, Charron A, Renaudin H, Bebear C, Bebear CM. 2009. Development of multiple-locus variable-number tandemrepeat analysis for molecular typing of Mycoplasma pneumoniae. J Clin Microbiol 47:914-923. http://dx. doi. org/10. 1128/JCM. 01935-08.
    • (2009) J Clin Microbiol , vol.47 , pp. 914-923
    • Dégrange, S.1    Cazanave, C.2    Charron, A.3    Renaudin, H.4    Bebear, C.5    Bebear, C.M.6
  • 17
    • 79960622292 scopus 로고    scopus 로고
    • Culture-independent multi-locus variablenumber tandem-repeat analysis (MLVA) of Mycoplasma pneumoniae
    • Dumke R, Jacobs E. 2011. Culture-independent multi-locus variablenumber tandem-repeat analysis (MLVA) of Mycoplasma pneumoniae. J Microbiol Methods 86:393-396. http://dx. doi. org/10. 1016/j. mimet. 2011 . 06. 008.
    • (2011) J Microbiol Methods , vol.86 , pp. 393-396
    • Dumke, R.1    Jacobs, E.2
  • 18
    • 84873043118 scopus 로고    scopus 로고
    • Multiple-locus variable-number tandem-repeat analysis of 201 Mycoplasma pneumoniae isolates from Beijing, China, from 2008 to 2011
    • Zhao F, Liu G, Cao B, Wu J, Gu Y, He L, Meng F, Zhu L, Yin Y, Lv M, Zhang J. 2013. Multiple-locus variable-number tandem-repeat analysis of 201 Mycoplasma pneumoniae isolates from Beijing, China, from 2008 to 2011. J Clin Microbiol 51:636-639. http://dx. doi. org/10 . 1128/JCM. 02567-12.
    • (2013) J Clin Microbiol , vol.51 , pp. 636-639
    • Zhao, F.1    Liu, G.2    Cao, B.3    Wu, J.4    Gu, Y.5    He, L.6    Meng, F.7    Zhu, L.8    Yin, Y.9    Lv, M.10    Zhang, J.11
  • 19
    • 84935016607 scopus 로고    scopus 로고
    • International Mycoplasma pneumoniae typing study: The interpretation of Mycoplasma pneumoniae multilocus variable-number tandemrepeat analysis
    • ESCMID Study Group for Mycoplasma Infections
    • Chalker VJ, Pereyre S, Dumke R, Winchell J, Khosla P, Sun H, Yan C, Vink C, Bébéar C, ESCMID Study Group for Mycoplasma Infections. 2015. International Mycoplasma pneumoniae typing study: the interpretation of Mycoplasma pneumoniae multilocus variable-number tandemrepeat analysis. New Microbes New Infect 7:37-40. http://dx. doi. org/10 . 1016/j. nmni. 2015. 05. 005.
    • (2015) New Microbes New Infect , vol.7 , pp. 37-40
    • Chalker, V.J.1    Pereyre, S.2    Dumke, R.3    Winchell, J.4    Khosla, P.5    Sun, H.6    Yan, C.7    Vink, C.8    Bébéar, C.9
  • 20
    • 84905049901 scopus 로고    scopus 로고
    • Trimmomatic: A flexible trimmer for Illumina sequence data
    • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114-2120. http://dx. doi . org/10. 1093/bioinformatics/btu170.
    • (2014) Bioinformatics , vol.30 , pp. 2114-2120
    • Bolger, A.M.1    Lohse, M.2    Usadel, B.3
  • 22
    • 0036488846 scopus 로고    scopus 로고
    • Subtyping of Mycoplasma pneumoniae isolates based on extended genome sequencing and on expression profiles
    • Dumke R, Catrein I, Pirkil E, Herrmann R, Jacobs E. 2003. Subtyping of Mycoplasma pneumoniae isolates based on extended genome sequencing and on expression profiles. Int J Med Microbiol 292:513-525. http: //dx. doi. org/10. 1078/1438-4221-00231.
    • (2003) Int J Med Microbiol , vol.292 , pp. 513-525
    • Dumke, R.1    Catrein, I.2    Pirkil, E.3    Herrmann, R.4    Jacobs, E.5
  • 23
    • 32044440317 scopus 로고    scopus 로고
    • Real-time detection of Mycoplasma pneumoniae in respiratory samples with an internal processing control
    • Pitcher D, Chalker VJ, Sheppard C, George RC, Harrison TG. 2006. Real-time detection of Mycoplasma pneumoniae in respiratory samples with an internal processing control. J Med Microbiol 55:149-155. http: //dx. doi. org/10. 1099/jmm. 0. 46281-0.
    • (2006) J Med Microbiol , vol.55 , pp. 149-155
    • Pitcher, D.1    Chalker, V.J.2    Sheppard, C.3    George, R.C.4    Harrison, T.G.5
  • 24
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 25
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120. http://dx. doi. org/10. 1007/BF01731581.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 26
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • In Munro H (ed),. Academic Press, New York, NY
    • Jukes T, Cantor C. 1969. Evolution of protein molecules, p 21-132. In Munro H (ed), Mammalian protein metabolism. Academic Press, New York, NY.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.1    Cantor, C.2
  • 28
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791. http://dx. doi. org/10. 2307/2408678.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 29
    • 78650827616 scopus 로고    scopus 로고
    • BIGSdb: Scalable analysis of bacterial genome variation at the population level
    • Jolley KA, Maiden MC. 2010. BIGSdb: scalable analysis of bacterial genome variation at the population level. BMC Bioinformatics 11:595. http: //dx. doi. org/10. 1186/1471-2105-11-595.
    • (2010) BMC Bioinformatics , vol.11 , pp. 595
    • Jolley, K.A.1    Maiden, M.C.2
  • 30
    • 84869878390 scopus 로고    scopus 로고
    • Phylogeny and molecular typing of Mycoplasma agalactiae and Mycoplasma bovis by multilocus sequencing
    • Manso-Silván L, Dupuy V, Lysnyansky I, Ozdemir U, Thiaucourt F. 2012. Phylogeny and molecular typing of Mycoplasma agalactiae and Mycoplasma bovis by multilocus sequencing. Vet Microbiol 161:104-112. http://dx. doi. org/10. 1016/j. vetmic. 2012. 07. 015.
    • (2012) Vet Microbiol , vol.161 , pp. 104-112
    • Manso-Silván, L.1    Dupuy, V.2    Lysnyansky, I.3    Ozdemir, U.4    Thiaucourt, F.5
  • 31
    • 84899568614 scopus 로고    scopus 로고
    • Multilocus sequence typing of Mycoplasma hyorhinis strains identified by a real-time TaqMan PCR assay
    • Tocqueville V, Ferre S, Nguyen NH, Kempf I, Marois-Crehan C. 2014. Multilocus sequence typing of Mycoplasma hyorhinis strains identified by a real-time TaqMan PCR assay. J Clin Microbiol 52:1664-1671. http://dx . doi. org/10. 1128/JCM. 03437-13.
    • (2014) J Clin Microbiol , vol.52 , pp. 1664-1671
    • Tocqueville, V.1    Ferre, S.2    Nguyen, N.H.3    Kempf, I.4    Marois-Crehan, C.5
  • 33
    • 14744279307 scopus 로고    scopus 로고
    • In vitro development of resistance to six and four fluoroquinolones in Mycoplasma pneumoniae and Mycoplasma hominis, respectively
    • Gruson D, Pereyre S, Renaudin H, Charron A, Bébéar C, Bébéar CM. 2005. In vitro development of resistance to six and four fluoroquinolones in Mycoplasma pneumoniae and Mycoplasma hominis, respectively. Antimicrob Agents Chemother 49:1190-1193. http://dx. doi. org/10. 1128 /AAC. 49. 3. 1190-1193. 2005.
    • (2005) Antimicrob Agents Chemother , vol.49 , pp. 1190-1193
    • Gruson, D.1    Pereyre, S.2    Renaudin, H.3    Charron, A.4    Bébéar, C.5    Bébéar, C.M.6
  • 34
    • 84919498931 scopus 로고    scopus 로고
    • Investigations of Mycoplasma pneumoniae infections in the United States: Trends in molecular typing and macrolide resistance from 2006 to 2013
    • Diaz MH, Benitez AJ, Winchell JM. 2015. Investigations of Mycoplasma pneumoniae infections in the United States: trends in molecular typing and macrolide resistance from 2006 to 2013. J Clin Microbiol 53:124-130. http://dx. doi. org/10. 1128/JCM. 02597-14.
    • (2015) J Clin Microbiol , vol.53 , pp. 124-130
    • Diaz, M.H.1    Benitez, A.J.2    Winchell, J.M.3
  • 35
    • 84921790150 scopus 로고    scopus 로고
    • Macrolideresistant Mycoplasma pneumoniae in adults in Zhejiang, China
    • Zhou Z, Li X, Chen X, Luo F, Pan C, Zheng X, Tan F. 2015. Macrolideresistant Mycoplasma pneumoniae in adults in Zhejiang, China. Antimicrob Agents Chemother 59:1048-1051. http://dx. doi. org/10. 1128/AAC . 04308-14.
    • (2015) Antimicrob Agents Chemother , vol.59 , pp. 1048-1051
    • Zhou, Z.1    Li, X.2    Chen, X.3    Luo, F.4    Pan, C.5    Zheng, X.6    Tan, F.7
  • 36
    • 84925741398 scopus 로고    scopus 로고
    • Prevalence of Mycoplasma pneumoniae: A cause for community-acquired infection among pediatric populaztion
    • Chen FQ, Yang YZ, Yu LL, Bi CB. 2015. Prevalence of Mycoplasma pneumoniae: a cause for community-acquired infection among pediatric populaztion. Niger J Clin Pract 18:354-358. http://dx. doi. org/10. 4103 /1119-3077. 153247.
    • (2015) Niger J Clin Pract , vol.18 , pp. 354-358
    • Chen, F.Q.1    Yang, Y.Z.2    Yu, L.L.3    Bi, C.B.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.