Culture-independent multi-locus variable-number tandem-repeat analysis (MLVA) of Mycoplasma pneumoniae

Journal of Microbiological Methods

Volumn 86, Issue 3, 2011, Pages 393-396

  Dumke, Roger ^a   Jacobs, Enno ^a  

^a DRESDEN UNIVERSITY OF TECHNOLOGY   (Germany)

Author keywords

Community acquired pneumonia; MLVA; Mycoplasma pneumoniae; Typing

Indexed keywords

BACTERIAL DNA;

ARTICLE; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; HUMAN; LUNG LAVAGE; MULTILOCUS VARIABLE NUMBER OF TANDEM REPEAT ANALYSIS; MYCOPLASMA PNEUMONIA; MYCOPLASMA PNEUMONIAE; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SPUTUM ANALYSIS; THROAT CULTURE; VARIABLE NUMBER OF TANDEM REPEAT;

DNA, BACTERIAL; HUMANS; MINISATELLITE REPEATS; MOLECULAR DIAGNOSTIC TECHNIQUES; MOLECULAR TYPING; MYCOPLASMA PNEUMONIAE; PNEUMONIA, MYCOPLASMA; POLYMERASE CHAIN REACTION;

MYCOPLASMA PNEUMONIAE;

EID: 79960622292     PISSN: 01677012     EISSN: 18728359     Source Type: Journal    
DOI: 10.1016/j.mimet.2011.06.008     Document Type: Article

References (20)

1. von Baum H., Welte T., Marre R., Suttorp N., Lück C., Ewig S. Mycoplasma pneumoniae pneumonia revisited within the German competence network for community-acquired pneumonia (CAPNETZ). BMC Infect. Dis. 2009, 9:62.
2. van Belkum A. Tracing isolates of bacterial species by multilocus variable number of tandem repeat analysis (MLVA). FEMS Immunol. Med. Microbiol. 2007, 49:22-27.
3. Chalker V., Stocki T., Mentasti M., Fleming D., Harrison T. Increased incidence of Mycoplasma pneumoniae infection in England and Wales in 2010: multilocus variable number tandem repeat analysis typing and macrolide susceptibility. Euro Surveill. 2011, 16(19). pii: 19865.
4. Cousin A., de Barbeyrac B., Charron A., Renaudin H., Bebear C. Analysis of RFLPs of amplified cytadhesin P1 gene for epidemiological study of Mycoplasma pneumoniae. Program and abstracts of the 10th Congress of the International Organization for Mycoplasmology (IOM), Bordeaux, France 1994, 494-495.
5. Cousin-Allery A., Charron A., de Barbeyrac B., Fremy G., Jensen J.S., Renaudin H., Bebear C. Molecular typing of Mycoplasma pneumoniae strains by PCR-based methods and pulsed-field gel electrophoresis. Application to French and Danish isolates. Epidemiol. Infect. 2000, 124:103-111.
6. Dandekar T., Huynen M., Regula J.T., Ueberle B., Zimmermann C.U., Andrade M.A., Doerks T., Sánchez-Pulido L., Snel B., Suyama M., Yuan Y.P., Herrmann R., Bork P. Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames. Nucleic Acids Res. 2000, 28:3278-3288.
7. Degrange S., Cazanave C., Charron A., Renaudin H., Bebear C., Bebear C.M. Development of multiple-locus variable-number tandem-repeat analysis for molecular typing of Mycoplasma pneumoniae. J. Clin. Microbiol. 2009, 47:914-923.
8. Dumke R., Catrein I., Pirkl E., Herrmann R., Jacobs E. Subtyping of Mycoplasma pneumoniae isolates based on extended genome sequencing and on expression profiles. Int. J. Med. Microbiol. 2003, 292:513-525.
9. Dumke R., Catrein I., Herrmann R., Jacobs E. Preference, adaptation and survival of Mycoplasma pneumoniae subtypes in an animal model. Int. J. Med. Microbiol. 2004, 294:149-155.
10. Dumke R., Lück P.C., Schaefer C., Noppen C., von Baum H., Marre R., Jacobs E. Culture-independent molecular subtyping of Mycoplasma pneumoniae in clinical samples. J. Clin. Microbiol. 2006, 44:2567-2570.
11. Dumke R., Jacobs E. Comparison of commercial and in-house real-time PCR assays used for detection of Mycoplasma pneumoniae. J. Clin. Microbiol. 2009, 47:441-444.
12. Dumke R., von Baum H., Lück P.C., Jacobs E. Subtypes and variants of Mycoplasma pneumoniae: local and temporal changes in Germany 2003-2006 and absence of a correlation between the genotype in the respiratory tract and the occurrence of genotype-specific antibodies in the sera of infected patients. Epidemiol. Infect. 2010, 138:1829-1837.
13. Kong F., Gordon S., Gilbert G.L. Rapid-cycle PCR for detection and typing of Mycoplasma pneumoniae in clinical specimens. J. Clin. Microbiol. 2000, 38:4256-4259.
14. Narita M. Pathogenesis of extrapulmonary manifestations of Mycoplasma pneumoniae infection with special reference to pneumonia. J. Infect. Chemother. 2010, 16:162-169.
15. Nilsson A.C., Björkman P., Persson K. Polymerase chain reaction is superior to serology for the diagnosis of acute Mycoplasma pneumoniae infection and reveals a high rate of persistent infection. BMC Microbiol. 2008, 8:93-100.
16. Renders N., Licciardello L., Ijsseldijk C., Sijmons M., van Alphen L., Verbrugh H., van Belkum A. Variable number of tandem repeat loci in genetically homogeneous Haemophilus influenzae strains alter during persistent colonisation of cystic fibrosis patients. FEMS Microbiol. Lett. 1999, 173:95-102.
17. Schwartz S., Mitchell S.L., Thurman K.A., Wolff B.J., Winchell J.M. Identification of P1 variants of Mycoplasma pneumoniae by use of high-resolution melt analysis. J. Clin. Microbiol. 2009, 47:4117-4120.
18. Spuesens E.B.M., Hoogenboezem T., Sluijter M., Hartwig N.G., van Rossum A.M.C., Vink C. Macrolide resistance determination and molecular typing of Mycoplasma pneumoniae. J. Microbiol. Meth. 2010, 82:214-222.
19. Su C.J., Chavoya A., Dallo S.F., Baseman J.B. Sequence divergency of the cytadhesin gene of Mycoplasma pneumoniae. Infect. Immun. 1990, 58:2669-2674.
20. Waites K.B., Talkington D.F. Mycoplasma pneumoniae and its role as a human pathogen. Clin. Microbiol. Rev. 2004, 17:697-728.