Correction: Global multilocus sequence typing analysis of Mycoplasma bovis isolates reveals two main population clusters (Journal of Clinical Microbiology (2015) 53:3 (789-794) DOI: 10.1128/JCM.01910-14);Global multilocus sequence typing analysis of Mycoplasma bovis isolates reveals two main population clusters

Journal of Clinical Microbiology

Volumn 53, Issue 3, 2015, Pages 789-794

  Rosales, R S ^a   Churchward, C P ^a,e   Schnee, C ^b   Sachse, K ^b   Lysnyansky, I ^c   Catania, S ^d   Iob, L ^d   Ayling, R D ^a   Nicholas, R A J ^a  

^a VETERINARY LABORATORIES AGENCY   (United Kingdom)

^b FEDERAL RESEARCH INSTITUTE FOR ANIMAL HEALTH   (Germany)

^c KIMRON VETERINARY INSTITUTE   (Israel)

^d ISTITUTO ZOOPROFILATTICO SPERIMENTALE DELLE VENEZIE   (Italy)

^e KINGSTON UNIVERSITY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

REPLICATION INITIATOR PROTEIN DNAA;

ARTICLE; ASIAN; ATPA GENE; AUSTRALIAN; BACTERIUM ISOLATE; BOVINE; COMPUTER ANALYSIS; CONTROLLED STUDY; DNAA GENE; EUROPEAN; GENE LOCUS; GENETIC ANALYSIS; GENETIC DISTANCE; GENETIC VARIABILITY; GEOGRAPHIC ORIGIN; HOUSEKEEPING GENE; METS GENE; MULTILOCUS SEQUENCE TYPING; MYCOPLASMA BOVIS; NONHUMAN; POPULATION STRUCTURE; PRIORITY JOURNAL; RECA GENE; RPOD GENE; TKT GENE; TUFA GENE; UNITED KINGDOM; ANIMAL; BACTERIAL GENE; CATTLE DISEASES; CLASSIFICATION; CLUSTER ANALYSIS; ESSENTIAL GENE; GENETIC VARIATION; GENETICS; GENOTYPE; HEALTH; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR EPIDEMIOLOGY; MOLECULAR GENETICS; MYCOPLASMA INFECTIONS; PHYLOGEOGRAPHY; VETERINARY;

BOS; BOVINAE; MYCOPLASMA BOVIS;

ANIMALS; CATTLE; CATTLE DISEASES; CLUSTER ANALYSIS; GENES, BACTERIAL; GENES, ESSENTIAL; GENETIC VARIATION; GENOTYPE; GLOBAL HEALTH; MOLECULAR EPIDEMIOLOGY; MOLECULAR SEQUENCE DATA; MULTILOCUS SEQUENCE TYPING; MYCOPLASMA BOVIS; MYCOPLASMA INFECTIONS; PHYLOGEOGRAPHY;

EID: 84923363496     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.00230-17     Document Type: Erratum

References (37)

1. Pfutzner H, Sachse K. 1996. Mycoplasma bovis as an agent of mastitis, pneumonia, arthritis and genital disorders in cattle. Rev Sci Tech 15:1477-1494.
2. Ball HJ, Nicholas RA. 2010. Mycoplasma bovis-associated disease: here, there and everywhere. Vet J 186:280-281. http://dx.doi.org/10.1016/j.tvjl.2010.02.002.
3. Nicholas RA, Ayling RD, McAuliffe L. 2008. Bovine respiratory disease, p 132-168. In Nicholas RA, Ayling RD, McAuliffe L (ed), Mycoplasma diseases of ruminants. CAB International, Norfolk, United Kingdom.
4. Kusiluka LJ, Kokotovic B, Ojeniyi B, Friis NF, Ahrens P. 2000. Genetic variations among Mycoplasma bovis strains isolated from Danish cattle. FEMS Microbiol Lett 192:113-118. http://dx.doi.org/10.1111/j.1574-6968.2000.tb09368.x.
5. Butler JA, Pinnow CC, Thomson JU, Levisohn S, Rosenbusch RF. 2001. Use of arbitrarily primed polymerase chain reaction to investigate Mycoplasma bovis outbreaks. Vet Microbiol 78:175-181. http://dx.doi.org/10.1016/S0378-1135 (00) 00286-8.
6. McAuliffe L, Kokotovic B, Ayling RD, Nicholas RA. 2004. Molecular epidemiological analysis of Mycoplasma bovis isolates from the United Kingdom shows two genetically distinct clusters. J Clin Microbiol 42:4556-4565. http://dx.doi.org/10.1128/JCM.42.10.4556-4565.2004.
7. Miles K, McAuliffe L, Persson A, Ayling RD, Nicholas RA. 2005. Insertion sequence profiling of UK Mycoplasma bovis field isolates. Vet Microbiol 107:301-306. http://dx.doi.org/10.1016/j.vetmic.2005.02.003.
8. Pinho L, Thompson G, Rosenbusch R, Carvalheira J. 2012. Genotyping of Mycoplasma bovis isolates using multiple-locus variable-number tandemrepeat analysis. J Microbiol Methods 88:377-385. http://dx.doi.org/10.1016/j.mimet.2012.01.003.
9. Amram E, Freed M, Khateb N, Mikula I, Blum S, Spergser J, Sharir B, Ozeri R, Harrus S, Lysnyansky I. 2013. Multiple locus variable number tandem repeat analysis of Mycoplasma bovis isolated from local and imported cattle. Vet J 197:286-290. http://dx.doi.org/10.1016/j.tvjl.2013.03.023.
10. Spergser J, Macher K, Kargl M, Lysnyansky I, Rosengarten R. 2013. Emergence, re-emergence, spread and host species crossing of Mycoplasma bovis in the Austrian Alps caused by a single endemic strain. Vet Microbiol 164:299-306. http://dx.doi.org/10.1016/j.vetmic.2013.02.007.
11. Gerner-Smidt P, Kincaid J, Kubota K, Hise K, Hunter SB, Fair MA, Norton D, Woo-Ming A, Kurzynski T, Sotir MJ, Head M, Holt K, Swaminathan B. 2005. Molecular surveillance of Shiga toxigenic Escherichia coli O157 by PulseNet USA. J Food Prot 68:1926-1931.
12. Allix-Beguec C, Harmsen D, Weniger T, Supply P, Niemann S. 2008. Evaluation and strategy for use of MIRU-VNTRplus, a multifunctional database for online analysis of genotyping data and phylogenetic identification of Mycobacterium tuberculosis complex isolates. J Clin Microbiol 46:2692-2699. http://dx.doi.org/10.1128/JCM.00540-08.
13. Maiden MC, Bygraves JA, Feil E, Morelli G, Russell JE, Urwin R, Zhang Q, Zhou J, Zurth K, Caugant DA, Feavers IM, Achtman M, Spratt BG. 1998. Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci U S A 95:3140-3145. http://dx.doi.org/10.1073/pnas.95.6.3140.
14. Urwin R, Maiden MC. 2003. Multi-locus sequence typing: a tool for global epidemiology. Trends Microbiol 11:479-487. http://dx.doi.org/10.1016/j.tim.2003.08.006.
15. Van Belkum A, Tassios PT, Dijkshoorn L, Haeggman S, Cookson B, Fry NK, Fussing V, Green J, Feil E, Gerner-Smidt P, Brisse S, Struelens M, European Society of Clinical Microbiology and Infectious Diseases Study Group on Epidemiological Markers. 2007. Guidelines for the validation and application of typing methods for use in bacterial epidemiology. Clin Microbiol Infect 13(Suppl 3):S1-S46. http://dx.doi.org/10.1111/j.1469-0691.2007.01786.x.
16. McAuliffe L, Gosney F, Hlusek M, De Garnica ML, Spergser J, Kargl M, Rosengarten R, Ayling RD, Nicholas RA, Ellis RJ. 2011. Multilocus sequence typing of Mycoplasma agalactiae. J Med Microbiol 60:803-811. http://dx.doi.org/10.1099/jmm.0.028159-0.
17. Mayor D, Jores J, Korczak BM, Kuhnert P. 2008. Multilocus sequence typing (MLST) of Mycoplasma hyopneumoniae: a diverse pathogen with limited clonality. Vet Microbiol 127:63-72. http://dx.doi.org/10.1016/j.vetmic.2007.08.010.
18. Nicholas R, Baker S. 1998. Recovery of mycoplasmas from animals. Methods Mol Biol 104:37-43.
19. McAuliffe L, Ellis RJ, Ayling RD, Nicholas RA. 2003. Differentiation of Mycoplasma species by 16S ribosomal DNA PCR and denaturing gradient gel electrophoresis fingerprinting. J Clin Microbiol 41:4844-4847. http://dx.doi.org/10.1128/JCM.41.10.4844-4847.2003.
20. McAuliffe L, Ellis RJ, Lawes JR, Ayling RD, Nicholas RA. 2005. 16S rDNA PCR and denaturing gradient gel electrophoresis: a single generic test for detecting and differentiating Mycoplasma species. J Med Microbiol 54:731-739. http://dx.doi.org/10.1099/jmm.0.46058-0.
21. Jolley KA, Maiden MC. 2010. BIGSdb: scalable analysis of bacterial genome variation at the population level. BMC Bioinformatics 11:595. http://dx.doi.org/10.1186/1471-2105-11-595.
22. Francisco AP, Vaz C, Monteiro PT, Melo-Cristino J, Ramirez M, Carrico JA. 2012. PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods. BMC Bioinformatics 13:87. http://dx.doi.org/10.1186/1471-2105-13-87.
23. Francisco AP, Bugalho M, Ramirez M, Carrico JA. 2009. Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach. BMC Bioinformatics 10:152. http://dx.doi.org/10.1186/1471-2105-10-152.
24. Haubold B, Hudson RR. 2000. LIAN 3.0: detecting linkage disequilibrium in multilocus data. Bioinformatics 16:847-848. http://dx.doi.org/10.1093/bioinformatics/16.9.847.
25. Nei M. 1973. Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci U S A 70:3321-3323. http://dx.doi.org/10.1073/pnas.70.12.3321.
26. Hunter PR, Gaston MA. 1988. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J Clin Microbiol 26:2465-2466.
27. Jolley KA, Feil EJ, Chan MS, Maiden MC. 2001. Sequence type analysis and recombinational tests (START). Bioinformatics 17:1230-1231. http://dx.doi.org/10.1093/bioinformatics/17.12.1230.
28. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-2739. http://dx.doi.org/10.1093/molbev/msr121.
29. Rzhetsky A, Nei M. 1992. A simple method for estimating and testing minimum-evolution trees. Mol Biol Evol 9:945-967.
30. Feil EJ, Holmes EC, Bessen DE, Chan MS, Day NP, Enright MC, Goldstein R, Hood DW, Kalia A, Moore CE, Zhou J, Spratt BG. 2001. Recombination within natural populations of pathogenic bacteria: shortterm empirical estimates and long-term phylogenetic consequences. Proc Natl Acad Sci U S A 98:182-187. http://dx.doi.org/10.1073/pnas.98.1.182.
31. Manso-Silvan L, Dupuy V, Lysnyansky I, Ozdemir U, Thiaucourt F. 2012. Phylogeny and molecular typing of Mycoplasma agalactiae and Mycoplasma bovis by multilocus sequencing. Vet Microbiol 161:104-112. http://dx.doi.org/10.1016/j.vetmic.2012.07.015.
32. Pettersson B, Uhlen M, Johansson KE. 1996. Phylogeny of some mycoplasmas from ruminants based on 16S rRNA sequences and definition of a new cluster within the hominis group. Int J Syst Bacteriol 46:1093-1098. http://dx.doi.org/10.1099/00207713-46-4-1093.
33. Sirand-Pugnet P, Lartigue C, Marenda M, Jacob D, Barre A, Barbe V, Schenowitz C, Mangenot S, Couloux A, Segurens B, De Daruvar A, Blanchard A, Citti C. 2007. Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome. PLoS Genet 3:e75. http://dx.doi.org/10.1371/journal.pgen. 0030075.
34. Fischer A, Shapiro B, Muriuki C, Heller M, Schnee C, Bongcam-Rudloff E, Vilei EM, Frey J, Jores J. 2012. The origin of the 'Mycoplasma mycoides cluster' coincides with domestication of ruminants. PLoS One 7:e36150. http://dx.doi.org/10.1371/journal.pone.0036150.
35. Siqueira FM, Thompson CE, Virginio VG, Gonchoroski T, Reolon L, Almeida LG, Da Fonseca MM, De Souza R, Prosdocimi F, Schrank IS, Ferreira HB, De Vasconcelos AT, Zaha A. 2013. New insights on the biology of swine respiratory tract mycoplasmas from a comparative genome analysis. BMC Genomics 14:175. http://dx.doi.org/10.1186/1471-2164-14-175.
36. Gonzalez-Escalona N, Martinez-Urtaza J, Romero J, Espejo RT, Jaykus LA, De Paola A. 2008. Determination of molecular phylogenetics of Vibrio parahaemolyticus strains by multilocus sequence typing. J Bacteriol 190:2831-2840. http://dx.doi.org/10.1128/JB.01808-07.
37. Arvand M, Raoult D, Feil EJ. 2010. Multi-locus sequence typing of a geographically and temporally diverse sample of the highly clonal human pathogen Bartonella quintana. PLoS One 5:e9765. http://dx.doi.org/10.1371/journal.pone.0009765.