Development of multiple-locus variable-number tandem-repeat analysis for molecular typing of Mycoplasma pneumoniae

Journal of Clinical Microbiology

Volumn 47, Issue 4, 2009, Pages 914-923

  Degrange S ^a   Cazanave, C ^a   Charron, A ^a   Renaudin, H ^a   Bebear C ^a   Bebear C M ^a  

^a Univ Victor Segalen Bordeaux 2   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ADHESIN; FLUORESCENT DYE; BACTERIAL DNA;

ARTICLE; BACTERIAL GENOME; BACTERIUM ISOLATE; CAPILLARY ELECTROCHROMATOGRAPHY; EUROPE; GENE LOCUS; JAPAN; MOLECULAR TYPING; MULTILOCUS SEQUENCE TYPING; MULTIPLEX POLYMERASE CHAIN REACTION; MYCOPLASMA PNEUMONIA; MYCOPLASMA PNEUMONIAE; NONHUMAN; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; TUNISIA; VARIABLE NUMBER OF TANDEM REPEAT; BACTERIUM IDENTIFICATION; CAPILLARY ELECTROPHORESIS; CLASSIFICATION; CLUSTER ANALYSIS; COMPARATIVE STUDY; DNA FINGERPRINTING; EVALUATION; GENETICS; GENOTYPE; HUMAN; METHODOLOGY; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY;

MYCOPLASMA PNEUMONIAE;

BACTERIAL TYPING TECHNIQUES; CLUSTER ANALYSIS; DNA FINGERPRINTING; DNA, BACTERIAL; ELECTROPHORESIS, CAPILLARY; EUROPE; GENOTYPE; HUMANS; JAPAN; MINISATELLITE REPEATS; MYCOPLASMA PNEUMONIAE; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; TUNISIA;

EID: 65249157907     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.01935-08     Document Type: Article

References (22)

1. Cousin-Allery, A., A. Charron, B. de Barbeyrac, G. Fremy, J. Skov Jensen, H. Renaudin, and C. Bébéar. 2000. Molecular typing of Mycoplasma pneu- moniae strains by PCR-based methods and pulsed-field gel electrophoresis. Application to French and Danish isolates. Epidemiol. Infect. 124:103-111.
2. Dorigo-Zetsma, J. W., J. Dankert, and S. A. Zaat. 2000. Genotyping of Mycoplasma pneumoniae clinical isolates reveals eight P1 subtypes within two genomic groups. J. Clin. Microbiol. 38:965-970.
3. Dorigo-Zetsma, J. W., B. Wilbrink, J. Dankert, and S. A. Zaat. 2001. Myco- plasma pneumoniae P1 type 1- and type 2-specific sequences within the P1 cytadhesin gene of individual strains. Infect. Immun. 69:5612-5618.
4. Dumke, R., I. Catrein, E. Pirkil, R. Herrmann, and E. Jacobs. 2003. Sub- typing of Mycoplasma pneumoniae isolates based on extended genome se- quencing and on expression profiles. Int. J. Med. Microbiol. 292:513-525.
5. Dumke, R., P. C. Luck, C. Noppen, C. Schaefer, H. von Baum, R. Marre, and E. Jacobs. 2006. Culture-independent molecular subtyping of Mycoplasma pneumoniae in clinical samples. J. Clin. Microbiol. 44:2567-2570.
6. Himmelreich, R., H. Hilbert, H. Plagens, E. Pirkl, B. C. Li, and R. Her- rmann. 1996. Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae. Nucleic Acids Res. 24:4420-4449.
7. Hunter, P. R., and M. A. Gaston. 1988. Numerical index of the discrimina- tory ability of typing systems: an application of Simpson's index of diversity. J. Clin. Microbiol. 26:2465-2466.
8. Kenri, T., R. Taniguchi, Y. Sasaki, N. Okazaki, M. Narita, K. Izumikawa, M. Umetsu, and T. Sasaki. 1999. Identification of a new variable sequence in the P1 cytadhesin gene of Mycoplasma pneumoniae: evidence for the generation of antigenic variation by DNA recombination between repetitive sequences. Infect. Immun. 67:4557-4562.
9. Klement, E., D. F. Talkington, O. Wasserzug, R. Kayouf, N. Davidovitch, R. Dumke, Y. Bar-Zeev, M. Ron, J. Boxman, W. Lanier Thacker, D. Wolf, T. Lazarovich, Y. Shemer-Avni, D. Glikman, E. Jacobs, I. Grotto, C. Block, and R. Nir-Paz. 2006. Identification of risk factors for infection in an outbreak of Mycoplasma pneumoniae respiratory tract disease. Clin. Infect. Dis. 43:1239- 1245.
10. Ma, L., S. Taylor, J. S. Jensen, L. Myers, R. Lillis, and D. H. Martin. 2008. Short tandem repeat sequences in the Mycoplasma genitalium genome and their use in a multilocus genotyping system. BMC Microbiol. 8:130.
11. Matsuoka, M., M. Narita, N. Okazaki, H. Ohya, T. Yamazaki, K. Ouchi, I. Suzuki, T. Andoh, T. Kenri, Y. Sasaki, A. Horino, M. Shintani, Y. Arakawa, and T. Sasaki. 2004. Characterization and molecular analysis of macrolide- resistant Mycoplasma pneumoniae clinical isolates obtained in Japan. Anti- microb. Agents Chemother. 48:4624-4630.
12. McAuliffe, L., R. D. Ayling, and R. A. Nicholas. 2007. Identification and characterization of variable-number tandem-repeat markers for the molec- ular epidemiological analysis of Mycoplasma mycoides subspecies mycoides SC. FEMS Microbiol. Lett. 276:181-188.
13. Meseguer, M. A., S. Garcia-Rull, J. Picher, J. Ortiz-Saracho, L. Maiz, and F. Baquero. 1995. Isolation of Mycoplasma pneumoniae from pericardial tissue. Eur. J. Clin. Microbiol. Infect. Dis. 14:825-826.
14. Pereyre, S., A. Charron, H. Renaudin, C. Bébéar, and C. M. Bébéar. 2007. First report of macrolide-resistant strains and description of a novel nucleotide sequence variation in the P1 adhesin gene in Mycoplasma pneumoniae clinical strains isolated in France over 12 years. J. Clin. Microbiol. 45:3534-3539.
15. Razin, S., D. Yogev, and Y. Naot. 1998. Molecular biology and pathogenicity of mycoplasmas. Microbiol. Mol. Biol. Rev. 62:1094-1156.
16. Rocha, E. P., and A. Blanchard. 2002. Genomic repeats, genome plasticity and the dynamics of Mycoplasma evolution. Nucleic Acids Res. 30:2031-2042.
17. Sasaki, T., T. Kenri, N. Okazaki, M. Iseki, R. Yamashita, M. Shintani, Y. Sasaki, and M. Yayoshi. 1996. Epidemiological study of Mycoplasma pneumoniae infections in Japan based on PCR-restriction fragment length polymorphism of the P1 cytadhesin gene. J. Clin. Microbiol. 34:447-449.
18. Schouls, L. M., H. G. van der Heide, L. Vauterin, P. Vauterin, and F. R. Mooi. 2004. Multiple-locus variable-number tandem repeat analysis of Dutch Bordetella pertussis strains reveals rapid genetic changes with clonal expansion during the late 1990s. J. Bacteriol. 186496-5505.
19. an Belkum, A., P. T. Tassios, L. Dijkshoorn, S. Haeggman, B. Cookson, N. K. Fry, V. Fussing, J. Green, E. Feil, P. Gerner-Smidt, S. Brisse, and M. Struelens 2007. Guidelines for the validation and application of typing methods for use in bacterial epidemiology. Clin. Microbiol. Infect. 13 (Suppl. 3) :1-46.
20. Vergnaud, G., and C. Pourcel. 2006. Multiple locus VNTR (variable number of tandem repeat) analysis (MLVA), p. 83-104. In E. Stackebrandt (ed.), Molecular identification, systematics and population structure of prokaryotes. Springer-Verlag, Berlin, Germany.
21. Waites, K. B., C. M. Bébéar, J. A. Roberston, D. F. Talkington, and G. E. Kenny (ed.). 2001. Cumitech 34, Laboratory diagnosis of mycoplasmal infections. Coordinating ed., F. S. Nolte. American Society for Microbiology, Washington, DC.
22. Waites, K. B., and D. F. Talkington. 2004. Mycoplasma pneumoniae and its role as a human pathogen. Clin. Microbiol. Rev. 17:697-728.