Culture-independent molecular subtyping of Mycoplasma pneumoniae in clinical samples

Journal of Clinical Microbiology

Volumn 44, Issue 7, 2006, Pages 2567-2570

  Dumke, Roger ^a   Lück, Paul Christian ^a   Noppen, Christoph ^b   Schaefer, Christoph ^b   Von Baum, Heike ^c   Marre, Reinhard ^c   Jacobs, Enno ^a  

^a DRESDEN UNIVERSITY OF TECHNOLOGY   (Germany)

^b Institut Dr Viollier   (Switzerland)

^c UNIVERSITY HOSPITAL ULM   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENE; BACTERIAL INFECTION; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; ENDEMIC DISEASE; EPIDEMIC; GENE AMPLIFICATION; MYCOPLASMA PNEUMONIAE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; STRAIN DIFFERENCE;

ADHESINS, BACTERIAL; AMINO ACID SEQUENCE; BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; EPIDEMIOLOGY, MOLECULAR; HUMANS; MOLECULAR SEQUENCE DATA; MYCOPLASMA PNEUMONIAE; PNEUMONIA, MYCOPLASMA; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA;

MYCOPLASMA PNEUMONIAE;

EID: 33746191688     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.00495-06     Document Type: Article

References (27)

1. Cousin-Allery, A., A. Charron, B. de Barbeyrac, G. Fremy, J. S. Jensen, H. Renaudin, and C. Bebear. 2000. Molecular typing of Mycoplasma pneumoniae strains by PCR-based methods and pulsed-field gel electrophoresis. Application to French and Danish isolates. Epidemiol. Infect. 124:103-111.
2. Dandekar, T., M. Huynen, J. T. Regula, B. Ueberle, C. U. Zimmermann, M. A. Andrade, T. Doerks, L. Sánchez-Pulido, B. Snel, M. Suyama, Y. P. Yuan, R. Herrmann, and P. Bork. 2000. Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames. Nucleic Acids Res. 28:3278-3288.
3. Dorigo-Zetsma, J. W., J. Dankert, and S. A. J. Zaat. 2000. Genotyping of Mycoplasma pneumoniae clinical isolates reveals eight P1 subtypes within two genomic groups. J. Clin. Microbiol. 38:965-970.
4. Dorigo-Zetsma, J. W., B. Wilbrink, J. Dankert, and S. A. J. Zaat. 2001. Mycoplasma pneumoniae P1 type 1- and type 2-specific sequences within the P1 cytadhesin gene of individual strains. Infect. Immun. 69:5612-5618.
5. Dumke, R., I. Catrein, E. Pirkl, R. Herrmann, and E. Jacobs. 2003. Subtyping of Mycoplasma pneumoniae isolates based on extended genome sequencing and on expression profiles. Int. J. Med. Microbiol. 292:513-525.
6. Dumke, R., I. Catrein, R. Herrmann, and E. Jacobs. 2004. Preference, adaptation and survival of Mycoplasma pneumoniae subtypes in an animal model. Int. J. Med. Microbiol. 294:149-155.
7. Foy, H. M. 1993. Infections caused by Mycoplasma pneumoniae and possible carrier state in different populations of patients. Clin. Infect. Dis. 17:37-46.
8. Himmelreich, R., H. Hilbert, H. Plagens, E. Pirkl, B. C. Li, and R. Herrmann. 1996. Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae. Nucleic Acids Res. 24:4420-4449.
9. Hu, P. C., C. H. Huang, H. M. Collier, and W. A. Clyde, Jr. 1983. Demonstration of antibodies to Mycoplasma pneumoniae attachment protein in human sera and respiratory secretions. Infect. Immun. 41:437-439.
10. Jacobs, E., M. Vonski, K. Oberle, O. Opitz, and K. Pietsch. 1996. Are outbreaks and sporadic respiratory infections by Mycoplasma pneumoniae due to two distinct subtypes? Eur. J. Clin. Microbiol. Infect. Dis. 15:38-44.
11. Jacobs, E. 1997. Mycoplasma infections of the human respiratory tract. Wien. Klin. Wochenschr. 109:574-577.
12. Kenri, T., R. Taniguchi, Y. Sasaki, N. Okazaki, M. Narita, K. Izumikawa, M. Umetsu, and T. Sasaki. 1999. Identification of a new variable sequence in the P1 cytadhesin gene of Mycoplasma pneumoniae: evidence for the generation of antigenic variation by DNA recombination between repetitive sequences. Infect. Immun. 67:4557-4562.
13. Kokotovic, B., N. F. Friis, J. S. Jensen, and P. Ahrens. 1999. Amplified-fragment length polymorphism fingerprinting of Mycoplasma species. J. Clin. Microbiol. 37:3300-3307.
14. Kong, F., S. Gordon, and G. L. Gilbert. 2000. Rapid-cycle PCR for detection and typing of Mycoplasma pneumoniae in clinical specimens. J. Clin. Microbiol. 38:4256-4259.
15. Layani-Milon, M. P., I. Gras, M. Valette, J. Luciani, J. Stagnara, M. Aymard, and B. Lina. 1999. Incidence of upper respiratory tract Mycoplasma pneumoniae infections among outpatients in Rhone-Alpes, France, during five successive winter periods. J. Clin. Microbiol. 37:1721-1726.
16. Lind, K., M. W. Benzon, J. S. Jensen, and W. A. Clyde, Jr. 1997. A seroepidemiological study of Mycoplasma pneumoniae infections in Denmark over the 50-year period 1946-1995. Eur. J. Epidemiol. 13:581-586.
17. Loens, K., D. Ursi, H. Goossens, and M. Ieven. 2003. Molecular diagnosis of Mycoplasma pneumoniae respiratory tract infections. J. Clin. Microbiol. 41:4915-4923.
18. Proft, T., H. Hilbert, G. Layh-Schmitt, and R. Herrmann. 1995. The proline-rich P65 protein of Mycoplasma pneumoniae is a component of the Triton X-100-insoluble fraction and exhibits size polymorphism in the strains M129 and FH. J. Bacteriol. 177:3370-3378.
19. Razin, S., and E. Jacobs. 1992. Mycoplasma adhesion. J. Gen. Microbiol. 138:407-422.
20. Ruland, K., R. Wenzel, and R. Herrmann. 1990. Analysis of three different repeated DNA elements present in the P1 operon of Mycoplasma pneumonias: size, number and distribution on the genome. Nucleic Acids Res. 18:6311-6317.
21. Ruland, K., R. Himmelreich, and R. Herrmann. 1994. Sequence divergence in the ORF6 gene of Mycoplasma pneumoniae. J. Bacteriol. 176: 5202-5209.
22. Sasaki, T., T. Kenri, N. Okazaki, M. Iseki, R. Yamashita, M. Shintani, Y. Sasaki, and M. Yayoshi. 1996. Epidemiological study of Mycoplasma pneumoniae infections in Japan based on PCR-restriction fragment length polymorphism of the P1 cytadhesin gene. J. Clin. Microbiol. 34:447-449.
23. Su, C. J., A. Chavoya, S. F. Dallo, and J. B. Baseman. 1990. Sequence divergence of the cytadhesin gene of Mycoplasma pneumoniae. Infect. Immun. 58:2669-2674.
24. Templeton, K. E., S. A. Scheltinga, A. W. Graffelman, J. M. van Schie, J. W. Crielaard, P. Sillekens, P. J. van den Broek, H. Goossens, M. F. C. Beersma, and E. C. J. Claas. 2003. Comparison and evaluation of real-time PCR, real-time nucleic acid sequence-based amplification, conventional PCR, and serology for diagnosis of Mycoplasma pneumoniae. J. Clin. Microbiol. 41:4366-4371.
25. Ursi, D., M. Heven, H. van Bever, W. Quint, H. G. M. Niesters, and H. Goossens. 1994. Typing of Mycoplasma pneumoniae by PCR-mediated DNA fingerprinting. J. Clin. Microbiol. 32:2873-2875.
26. Waites, K. B., and D. F. Talkington. 2004. Mycoplasma pneumoniae and its role as a human pathogen. Clin. Microbiol. Rev. 17:697-728.
27. Welte, T., N. Suttorp, and R. Marre. 2004. CAPNETZ-community-acquired pneumonia competence network. Infection 32:234-238.