메뉴 건너뛰기




Volumn 91, Issue 3, 2015, Pages

Ammonia oxidation is not required for growth of group 1.1c soil Thaumarchaeota

Author keywords

Acidic forest; Organic carbon; Organic nitrogen; Soil archaea; Temperature; Thaumarchaeota

Indexed keywords

ABUNDANCE; ACID SOIL; AMMONIA; CONIFEROUS FOREST; DECIDUOUS FOREST; EUKARYOTE; FOREST SOIL; GENE EXPRESSION; GRASSLAND; GROWTH DETERMINATION; MICROCOSM; MOLECULAR ANALYSIS; ORGANIC NITROGEN; OXIDATION; PHYSIOLOGY; SOIL MICROORGANISM; TEMPERATURE;

EID: 84941957527     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1093/femsec/fiv001     Document Type: Article
Times cited : (57)

References (37)
  • 1
    • 76349125984 scopus 로고    scopus 로고
    • Global ecological patterns in uncultured Archaea
    • Auguet J, Barberan A, Casamayor EO. Global ecological patterns in uncultured Archaea. ISME J 2010;4:182-90.
    • (2010) ISME J , vol.4 , pp. 182-190
    • Auguet, J.1    Barberan, A.2    Casamayor, E.O.3
  • 2
    • 84874707666 scopus 로고    scopus 로고
    • Partitioning of Thaumarchaeota populations along environmental gradients in high mountain lakes
    • Auguet J, Casamayor EO. Partitioning of Thaumarchaeota populations along environmental gradients in high mountain lakes. FEMS Microbiol Ecol 2013;84:154-64.
    • (2013) FEMS Microbiol Ecol , vol.84 , pp. 154-164
    • Auguet, J.1    Casamayor, E.O.2
  • 3
    • 84855589634 scopus 로고    scopus 로고
    • In-depth characterization via complementing culture-independent approaches of themicrobial community in an acidic hot spring of the Colombian Andes
    • Bohorquez LC, Delgado-Serrano L, López G, et al. In-depth characterization via complementing culture-independent approaches of themicrobial community in an acidic hot spring of the Colombian Andes. Microb Ecol 2012;63:103-15.
    • (2012) Microb Ecol , vol.63 , pp. 103-115
    • Bohorquez, L.C.1    Delgado-Serrano, L.2    López, G.3
  • 4
    • 78149413231 scopus 로고    scopus 로고
    • Anaerobic Eury- and Crenarchaeota inhabit ectomycorrhizas of boreal forest Scots pine
    • Bomberg M, Montonen L, Timonen S. Anaerobic Eury- and Crenarchaeota inhabit ectomycorrhizas of boreal forest Scots pine. Eur J Soil Biol 2010;46:356-64.
    • (2010) Eur J Soil Biol , vol.46 , pp. 356-364
    • Bomberg, M.1    Montonen, L.2    Timonen, S.3
  • 5
    • 79960579039 scopus 로고    scopus 로고
    • Archaeal communities in boreal forest tree rhizospheres respond to changing soil temperatures
    • Bomberg M, Münster U, Pumpanen J, et al. Archaeal communities in boreal forest tree rhizospheres respond to changing soil temperatures. Microb Ecol 2011;62:205-17.
    • (2011) Microb Ecol , vol.62 , pp. 205-217
    • Bomberg, M.1    Münster, U.2    Pumpanen, J.3
  • 6
    • 58149379431 scopus 로고    scopus 로고
    • Effect of tree species and mycorrhizal colonization on the archaeal population of boreal forest rhizospheres
    • Bomberg M, Timonen S. Effect of tree species and mycorrhizal colonization on the archaeal population of boreal forest rhizospheres. Appl Environ Microb 2009;75:308-15.
    • (2009) Appl Environ Microb , vol.75 , pp. 308-315
    • Bomberg, M.1    Timonen, S.2
  • 7
    • 39149118031 scopus 로고    scopus 로고
    • Mesophilic crenarchaeota:proposal for a third archaeal phylum, the Thaumarchaeota
    • Brochier-Armanet C, Boussau B, Gribaldo S, et al. Mesophilic crenarchaeota:proposal for a third archaeal phylum, the Thaumarchaeota. Nat Rev Microbiol 2008;6:245-52.
    • (2008) Nat Rev Microbiol , vol.6 , pp. 245-252
    • Brochier-Armanet, C.1    Boussau, B.2    Gribaldo, S.3
  • 8
    • 84879409504 scopus 로고    scopus 로고
    • Diversity of Archaea in Brazilian savannah soils
    • Catão E, Castro AP, Barreto CC, et al. Diversity of Archaea in Brazilian savannah soils. Arch Microbiol 2013;195:507-12.
    • (2013) Arch Microbiol , vol.195 , pp. 507-512
    • Catão, E.1    Castro, A.P.2    Barreto, C.C.3
  • 9
    • 84876485968 scopus 로고    scopus 로고
    • Effects of inorganic fertilizer and manure on soil archaeal abundance at two experimental farms during three consecutive rotation-cropping seasons
    • Chan Y, McCormick WA, Ma BL. Effects of inorganic fertilizer and manure on soil archaeal abundance at two experimental farms during three consecutive rotation-cropping seasons. Appl Soil Ecol 2013;68:26-35.
    • (2013) Appl Soil Ecol , vol.68 , pp. 26-35
    • Chan, Y.1    McCormick, W.A.2    Ma, B.L.3
  • 10
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • DeLong EF. Archaea in coastal marine environments. P Natl Acad Sci USA 1992;89:5685-9.
    • (1992) P Natl Acad Sci USA , vol.89 , pp. 5685-5689
    • DeLong, E.F.1
  • 11
    • 0031769609 scopus 로고    scopus 로고
    • Everything in moderation: archaea as 'nonextremophiles'
    • Delong EF. Everything in moderation: archaea as 'nonextremophiles'. Curr Opin Genet Dev 1998;8:649-54.
    • (1998) Curr Opin Genet Dev , vol.8 , pp. 649-654
    • Delong, E.F.1
  • 12
    • 0026525546 scopus 로고
    • Novel major archaebacterial group from marine plankton
    • Fuhrman JA, McCallum K, Davis AA. Novel major archaebacterial group from marine plankton. Nature 1992;356:148-9.
    • (1992) Nature , vol.356 , pp. 148-149
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 13
    • 0034468557 scopus 로고    scopus 로고
    • Rapid method for coextraction of DNA and RNA fromnatural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition
    • Griffiths RI, Whiteley AS, O'Donnell AG, et al. Rapid method for coextraction of DNA and RNA fromnatural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition. Appl Environ Microb 2000;66:5488-91.
    • (2000) Appl Environ Microb , vol.66 , pp. 5488-5491
    • Griffiths, R.I.1    Whiteley, A.S.2    O'Donnell, A.G.3
  • 14
    • 78049277482 scopus 로고    scopus 로고
    • Archaea rather than bacteria control nitrification in two agricultural acidic soils
    • Gubry-Rangin C, Nicol GW, Prosser JI. Archaea rather than bacteria control nitrification in two agricultural acidic soils. FEMS Microbiol Ecol 2010;74:566-74.
    • (2010) FEMS Microbiol Ecol , vol.74 , pp. 566-574
    • Gubry-Rangin, C.1    Nicol, G.W.2    Prosser, J.I.3
  • 15
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis programforWindows 95/98/NT
    • Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis programforWindows 95/98/NT. Nucl Acid S 1999;41:95-8.
    • (1999) Nucl Acid S , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 16
    • 33646262107 scopus 로고    scopus 로고
    • Quantifying archaeal community autotrophy in the mesopelagic ocean using natural radiocarbon
    • Ingalls AE, Shah SR, Hansman RL, et al. Quantifying archaeal community autotrophy in the mesopelagic ocean using natural radiocarbon. P Natl Acad Sci USA 2006;103:6442-7.
    • (2006) P Natl Acad Sci USA , vol.103 , pp. 6442-6447
    • Ingalls, A.E.1    Shah, S.R.2    Hansman, R.L.3
  • 17
    • 0030894624 scopus 로고    scopus 로고
    • Novel group within the kingdom Crenarchaeota from boreal forest soil
    • Jurgens G, Lindström K, Saano A. Novel group within the kingdom Crenarchaeota from boreal forest soil. Appl Environ Microb 1997;63:803-5.
    • (1997) Appl Environ Microb , vol.63 , pp. 803-805
    • Jurgens, G.1    Lindström, K.2    Saano, A.3
  • 18
    • 34249106390 scopus 로고    scopus 로고
    • High abundance of Crenarchaeota in a temperate acidic forest soil
    • Kemnitz D, Kolb S, Conrad R. High abundance of Crenarchaeota in a temperate acidic forest soil. FEMS Microbiol Ecol 2007;60:442-8.
    • (2007) FEMS Microbiol Ecol , vol.60 , pp. 442-448
    • Kemnitz, D.1    Kolb, S.2    Conrad, R.3
  • 19
    • 70449090074 scopus 로고    scopus 로고
    • Soil pH regulates the abundance and diversity of Group 1.1c Crenarchaeota
    • Lehtovirta LE, Prosser JI, Nicol GW. Soil pH regulates the abundance and diversity of Group 1.1c Crenarchaeota. FEMS Microbiol Ecol 2009;70:367-76.
    • (2009) FEMS Microbiol Ecol , vol.70 , pp. 367-376
    • Lehtovirta, L.E.1    Prosser, J.I.2    Nicol, G.W.3
  • 20
    • 84991532684 scopus 로고    scopus 로고
    • Characterisation of terrestrial acidophilic archaeal ammonia oxidisers and their inhibition and stimulation by organic compounds
    • Lehtovirta-Morley LE, Ge C, Ross J, et al. Characterisation of terrestrial acidophilic archaeal ammonia oxidisers and their inhibition and stimulation by organic compounds. FEMS Microbiol Ecol 2014;89:542-52.
    • (2014) FEMS Microbiol Ecol , vol.89 , pp. 542-552
    • Lehtovirta-Morley, L.E.1    Ge, C.2    Ross, J.3
  • 21
    • 33747479446 scopus 로고    scopus 로고
    • Archaea predominate among ammonia-oxidising prokaryotes in soils
    • Leininger S, Urich T, Schloter M, et al. Archaea predominate among ammonia-oxidising prokaryotes in soils. Nature 2006;442:806-9.
    • (2006) Nature , vol.442 , pp. 806-809
    • Leininger, S.1    Urich, T.2    Schloter, M.3
  • 22
    • 84857913741 scopus 로고    scopus 로고
    • Stimulation of thaumarchaeal ammonia oxidation by ammonia derived from organic nitrogen but not added inorganic nitrogen
    • Levičnik-Höfferle Š, Nicol GW, Ausec L, et al. Stimulation of thaumarchaeal ammonia oxidation by ammonia derived from organic nitrogen but not added inorganic nitrogen. FEMS Microbiol Ecol 2012;80:114-23.
    • (2012) FEMS Microbiol Ecol , vol.80 , pp. 114-123
    • Š, L.-H.1    Nicol, G.W.2    Ausec, L.3
  • 23
    • 80053642618 scopus 로고    scopus 로고
    • Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers
    • Mußmann M, Brito I, Pitcher A, et al. Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers. P Natl Acad Sci USA 2011;108:16771-6.
    • (2011) P Natl Acad Sci USA , vol.108 , pp. 16771-16776
    • Mußmann, M.1    Brito, I.2    Pitcher, A.3
  • 24
    • 33947221558 scopus 로고    scopus 로고
    • Afforestation of moorland leads to changes in crenarchaeal community structure
    • Nicol GW, Campbell CD, Chapman SJ, et al. Afforestation of moorland leads to changes in crenarchaeal community structure. FEMS Microbiol Ecol 2007;60:51-9.
    • (2007) FEMS Microbiol Ecol , vol.60 , pp. 51-59
    • Nicol, G.W.1    Campbell, C.D.2    Chapman, S.J.3
  • 25
    • 52949137846 scopus 로고    scopus 로고
    • The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia-oxidizing archaea and bacteria
    • Nicol GW, Leininger S, Schleper C, et al. The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia-oxidizing archaea and bacteria. EnvironMicrobiol 2008;10:2966-78.
    • (2008) EnvironMicrobiol , vol.10 , pp. 2966-2978
    • Nicol, G.W.1    Leininger, S.2    Schleper, C.3
  • 26
    • 33745792553 scopus 로고    scopus 로고
    • Crenarchaeal community assembly and microdiversity in developing soils at two sites associated with deglaciation
    • Nicol GW, Tscherko D, Chang L, et al. Crenarchaeal community assembly and microdiversity in developing soils at two sites associated with deglaciation. Environ Microbiol 2006;8:1382-93.
    • (2006) Environ Microbiol , vol.8 , pp. 1382-1393
    • Nicol, G.W.1    Tscherko, D.2    Chang, L.3
  • 27
    • 0042853314 scopus 로고    scopus 로고
    • Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR
    • Ochsenreiter T, Selezi D, Quaiser A, et al. Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR. Environ Microbiol 2003;5:787-97.
    • (2003) Environ Microbiol , vol.5 , pp. 787-797
    • Ochsenreiter, T.1    Selezi, D.2    Quaiser, A.3
  • 28
    • 69949127231 scopus 로고    scopus 로고
    • Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene
    • Offre P, Prosser JI, Nicol GW. Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene. FEMS Microbiol Ecol 2009;70:99-108.
    • (2009) FEMS Microbiol Ecol , vol.70 , pp. 99-108
    • Offre, P.1    Prosser, J.I.2    Nicol, G.W.3
  • 29
    • 33845402281 scopus 로고    scopus 로고
    • Biogeography and landscapescale diversity of the dominant Crenarchaeota of soil
    • Oline DK, Schmidt SK, Grant MC. Biogeography and landscapescale diversity of the dominant Crenarchaeota of soil. Microb Ecol 2006;52:480-90.
    • (2006) Microb Ecol , vol.52 , pp. 480-490
    • Oline, D.K.1    Schmidt, S.K.2    Grant, M.C.3
  • 30
    • 0033754312 scopus 로고    scopus 로고
    • Marine planktonic archaea take up amino acids
    • Ouverney CC, Fuhrman JA. Marine planktonic archaea take up amino acids. Appl Environ Microb 2000;66:4829-33.
    • (2000) Appl Environ Microb , vol.66 , pp. 4829-4833
    • Ouverney, C.C.1    Fuhrman, J.A.2
  • 31
    • 79959289950 scopus 로고    scopus 로고
    • The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology
    • Pester M, Schleper C, Wagner M. The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology. Curr Opin Microbiol 2011;14:300-6.
    • (2011) Curr Opin Microbiol , vol.14 , pp. 300-306
    • Pester, M.1    Schleper, C.2    Wagner, M.3
  • 32
    • 0030814870 scopus 로고    scopus 로고
    • The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations
    • Rotthauwe J-H, Witzel K, Liesack W. The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl Environ Microb 1997;63:4704-12.
    • (1997) Appl Environ Microb , vol.63 , pp. 4704-4712
    • Rotthauwe, J.-H.1    Witzel, K.2    Liesack, W.3
  • 33
    • 78649713696 scopus 로고    scopus 로고
    • Thaumarchaeal ammonia oxidation in an acidic forest peat soil is not influenced by ammonium amendment
    • Stopnišek N, Gubry-Rangin C, Höfferle S, et al. Thaumarchaeal ammonia oxidation in an acidic forest peat soil is not influenced by ammonium amendment. Appl Environ Microb 2010;76:7626-34.
    • (2010) Appl Environ Microb , vol.76 , pp. 7626-7634
    • Stopnišek, N.1    Gubry-Rangin, C.2    Höfferle, S.3
  • 34
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994;22:4673-80.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 35
    • 41849095617 scopus 로고    scopus 로고
    • Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms
    • Tourna M, Freitag TE, Nicol GW, et al. Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms. Environ Microbiol 2008;10:1357-64.
    • (2008) Environ Microbiol , vol.10 , pp. 1357-1364
    • Tourna, M.1    Freitag, T.E.2    Nicol, G.W.3
  • 36
    • 84885958115 scopus 로고    scopus 로고
    • pH dominates variation in tropical soil archaeal diversity and community structure
    • Tripathi BM, Kim M, Lai-Hoe A, et al. pH dominates variation in tropical soil archaeal diversity and community structure. FEMS Microbiol Ecol 2013;86:303-11.
    • (2013) FEMS Microbiol Ecol , vol.86 , pp. 303-311
    • Tripathi, B.M.1    Kim, M.2    Lai-Hoe, A.3
  • 37
    • 77958040385 scopus 로고    scopus 로고
    • Soil microbial communities associated with Douglas-fir and red alder stands at highand low-productivity forest sites in Oregon, USA
    • Yarwood SA, Bottomley PJ, Myrold DD. Soil microbial communities associated with Douglas-fir and red alder stands at highand low-productivity forest sites in Oregon, USA. Microb Ecol 2010;60:606-17.
    • (2010) Microb Ecol , vol.60 , pp. 606-617
    • Yarwood, S.A.1    Bottomley, P.J.2    Myrold, D.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.