-
1
-
-
76349125984
-
Global ecological patterns in uncultured Archaea
-
Auguet J, Barberan A, Casamayor EO. Global ecological patterns in uncultured Archaea. ISME J 2010;4:182-90.
-
(2010)
ISME J
, vol.4
, pp. 182-190
-
-
Auguet, J.1
Barberan, A.2
Casamayor, E.O.3
-
2
-
-
84874707666
-
Partitioning of Thaumarchaeota populations along environmental gradients in high mountain lakes
-
Auguet J, Casamayor EO. Partitioning of Thaumarchaeota populations along environmental gradients in high mountain lakes. FEMS Microbiol Ecol 2013;84:154-64.
-
(2013)
FEMS Microbiol Ecol
, vol.84
, pp. 154-164
-
-
Auguet, J.1
Casamayor, E.O.2
-
3
-
-
84855589634
-
In-depth characterization via complementing culture-independent approaches of themicrobial community in an acidic hot spring of the Colombian Andes
-
Bohorquez LC, Delgado-Serrano L, López G, et al. In-depth characterization via complementing culture-independent approaches of themicrobial community in an acidic hot spring of the Colombian Andes. Microb Ecol 2012;63:103-15.
-
(2012)
Microb Ecol
, vol.63
, pp. 103-115
-
-
Bohorquez, L.C.1
Delgado-Serrano, L.2
López, G.3
-
4
-
-
78149413231
-
Anaerobic Eury- and Crenarchaeota inhabit ectomycorrhizas of boreal forest Scots pine
-
Bomberg M, Montonen L, Timonen S. Anaerobic Eury- and Crenarchaeota inhabit ectomycorrhizas of boreal forest Scots pine. Eur J Soil Biol 2010;46:356-64.
-
(2010)
Eur J Soil Biol
, vol.46
, pp. 356-364
-
-
Bomberg, M.1
Montonen, L.2
Timonen, S.3
-
5
-
-
79960579039
-
Archaeal communities in boreal forest tree rhizospheres respond to changing soil temperatures
-
Bomberg M, Münster U, Pumpanen J, et al. Archaeal communities in boreal forest tree rhizospheres respond to changing soil temperatures. Microb Ecol 2011;62:205-17.
-
(2011)
Microb Ecol
, vol.62
, pp. 205-217
-
-
Bomberg, M.1
Münster, U.2
Pumpanen, J.3
-
6
-
-
58149379431
-
Effect of tree species and mycorrhizal colonization on the archaeal population of boreal forest rhizospheres
-
Bomberg M, Timonen S. Effect of tree species and mycorrhizal colonization on the archaeal population of boreal forest rhizospheres. Appl Environ Microb 2009;75:308-15.
-
(2009)
Appl Environ Microb
, vol.75
, pp. 308-315
-
-
Bomberg, M.1
Timonen, S.2
-
7
-
-
39149118031
-
Mesophilic crenarchaeota:proposal for a third archaeal phylum, the Thaumarchaeota
-
Brochier-Armanet C, Boussau B, Gribaldo S, et al. Mesophilic crenarchaeota:proposal for a third archaeal phylum, the Thaumarchaeota. Nat Rev Microbiol 2008;6:245-52.
-
(2008)
Nat Rev Microbiol
, vol.6
, pp. 245-252
-
-
Brochier-Armanet, C.1
Boussau, B.2
Gribaldo, S.3
-
8
-
-
84879409504
-
Diversity of Archaea in Brazilian savannah soils
-
Catão E, Castro AP, Barreto CC, et al. Diversity of Archaea in Brazilian savannah soils. Arch Microbiol 2013;195:507-12.
-
(2013)
Arch Microbiol
, vol.195
, pp. 507-512
-
-
Catão, E.1
Castro, A.P.2
Barreto, C.C.3
-
9
-
-
84876485968
-
Effects of inorganic fertilizer and manure on soil archaeal abundance at two experimental farms during three consecutive rotation-cropping seasons
-
Chan Y, McCormick WA, Ma BL. Effects of inorganic fertilizer and manure on soil archaeal abundance at two experimental farms during three consecutive rotation-cropping seasons. Appl Soil Ecol 2013;68:26-35.
-
(2013)
Appl Soil Ecol
, vol.68
, pp. 26-35
-
-
Chan, Y.1
McCormick, W.A.2
Ma, B.L.3
-
10
-
-
0026755238
-
Archaea in coastal marine environments
-
DeLong EF. Archaea in coastal marine environments. P Natl Acad Sci USA 1992;89:5685-9.
-
(1992)
P Natl Acad Sci USA
, vol.89
, pp. 5685-5689
-
-
DeLong, E.F.1
-
11
-
-
0031769609
-
Everything in moderation: archaea as 'nonextremophiles'
-
Delong EF. Everything in moderation: archaea as 'nonextremophiles'. Curr Opin Genet Dev 1998;8:649-54.
-
(1998)
Curr Opin Genet Dev
, vol.8
, pp. 649-654
-
-
Delong, E.F.1
-
12
-
-
0026525546
-
Novel major archaebacterial group from marine plankton
-
Fuhrman JA, McCallum K, Davis AA. Novel major archaebacterial group from marine plankton. Nature 1992;356:148-9.
-
(1992)
Nature
, vol.356
, pp. 148-149
-
-
Fuhrman, J.A.1
McCallum, K.2
Davis, A.A.3
-
13
-
-
0034468557
-
Rapid method for coextraction of DNA and RNA fromnatural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition
-
Griffiths RI, Whiteley AS, O'Donnell AG, et al. Rapid method for coextraction of DNA and RNA fromnatural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition. Appl Environ Microb 2000;66:5488-91.
-
(2000)
Appl Environ Microb
, vol.66
, pp. 5488-5491
-
-
Griffiths, R.I.1
Whiteley, A.S.2
O'Donnell, A.G.3
-
14
-
-
78049277482
-
Archaea rather than bacteria control nitrification in two agricultural acidic soils
-
Gubry-Rangin C, Nicol GW, Prosser JI. Archaea rather than bacteria control nitrification in two agricultural acidic soils. FEMS Microbiol Ecol 2010;74:566-74.
-
(2010)
FEMS Microbiol Ecol
, vol.74
, pp. 566-574
-
-
Gubry-Rangin, C.1
Nicol, G.W.2
Prosser, J.I.3
-
15
-
-
0002051540
-
BioEdit: a user-friendly biological sequence alignment editor and analysis programforWindows 95/98/NT
-
Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis programforWindows 95/98/NT. Nucl Acid S 1999;41:95-8.
-
(1999)
Nucl Acid S
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
16
-
-
33646262107
-
Quantifying archaeal community autotrophy in the mesopelagic ocean using natural radiocarbon
-
Ingalls AE, Shah SR, Hansman RL, et al. Quantifying archaeal community autotrophy in the mesopelagic ocean using natural radiocarbon. P Natl Acad Sci USA 2006;103:6442-7.
-
(2006)
P Natl Acad Sci USA
, vol.103
, pp. 6442-6447
-
-
Ingalls, A.E.1
Shah, S.R.2
Hansman, R.L.3
-
17
-
-
0030894624
-
Novel group within the kingdom Crenarchaeota from boreal forest soil
-
Jurgens G, Lindström K, Saano A. Novel group within the kingdom Crenarchaeota from boreal forest soil. Appl Environ Microb 1997;63:803-5.
-
(1997)
Appl Environ Microb
, vol.63
, pp. 803-805
-
-
Jurgens, G.1
Lindström, K.2
Saano, A.3
-
18
-
-
34249106390
-
High abundance of Crenarchaeota in a temperate acidic forest soil
-
Kemnitz D, Kolb S, Conrad R. High abundance of Crenarchaeota in a temperate acidic forest soil. FEMS Microbiol Ecol 2007;60:442-8.
-
(2007)
FEMS Microbiol Ecol
, vol.60
, pp. 442-448
-
-
Kemnitz, D.1
Kolb, S.2
Conrad, R.3
-
19
-
-
70449090074
-
Soil pH regulates the abundance and diversity of Group 1.1c Crenarchaeota
-
Lehtovirta LE, Prosser JI, Nicol GW. Soil pH regulates the abundance and diversity of Group 1.1c Crenarchaeota. FEMS Microbiol Ecol 2009;70:367-76.
-
(2009)
FEMS Microbiol Ecol
, vol.70
, pp. 367-376
-
-
Lehtovirta, L.E.1
Prosser, J.I.2
Nicol, G.W.3
-
20
-
-
84991532684
-
Characterisation of terrestrial acidophilic archaeal ammonia oxidisers and their inhibition and stimulation by organic compounds
-
Lehtovirta-Morley LE, Ge C, Ross J, et al. Characterisation of terrestrial acidophilic archaeal ammonia oxidisers and their inhibition and stimulation by organic compounds. FEMS Microbiol Ecol 2014;89:542-52.
-
(2014)
FEMS Microbiol Ecol
, vol.89
, pp. 542-552
-
-
Lehtovirta-Morley, L.E.1
Ge, C.2
Ross, J.3
-
21
-
-
33747479446
-
Archaea predominate among ammonia-oxidising prokaryotes in soils
-
Leininger S, Urich T, Schloter M, et al. Archaea predominate among ammonia-oxidising prokaryotes in soils. Nature 2006;442:806-9.
-
(2006)
Nature
, vol.442
, pp. 806-809
-
-
Leininger, S.1
Urich, T.2
Schloter, M.3
-
22
-
-
84857913741
-
Stimulation of thaumarchaeal ammonia oxidation by ammonia derived from organic nitrogen but not added inorganic nitrogen
-
Levičnik-Höfferle Š, Nicol GW, Ausec L, et al. Stimulation of thaumarchaeal ammonia oxidation by ammonia derived from organic nitrogen but not added inorganic nitrogen. FEMS Microbiol Ecol 2012;80:114-23.
-
(2012)
FEMS Microbiol Ecol
, vol.80
, pp. 114-123
-
-
Š, L.-H.1
Nicol, G.W.2
Ausec, L.3
-
23
-
-
80053642618
-
Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers
-
Mußmann M, Brito I, Pitcher A, et al. Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers. P Natl Acad Sci USA 2011;108:16771-6.
-
(2011)
P Natl Acad Sci USA
, vol.108
, pp. 16771-16776
-
-
Mußmann, M.1
Brito, I.2
Pitcher, A.3
-
24
-
-
33947221558
-
Afforestation of moorland leads to changes in crenarchaeal community structure
-
Nicol GW, Campbell CD, Chapman SJ, et al. Afforestation of moorland leads to changes in crenarchaeal community structure. FEMS Microbiol Ecol 2007;60:51-9.
-
(2007)
FEMS Microbiol Ecol
, vol.60
, pp. 51-59
-
-
Nicol, G.W.1
Campbell, C.D.2
Chapman, S.J.3
-
25
-
-
52949137846
-
The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia-oxidizing archaea and bacteria
-
Nicol GW, Leininger S, Schleper C, et al. The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia-oxidizing archaea and bacteria. EnvironMicrobiol 2008;10:2966-78.
-
(2008)
EnvironMicrobiol
, vol.10
, pp. 2966-2978
-
-
Nicol, G.W.1
Leininger, S.2
Schleper, C.3
-
26
-
-
33745792553
-
Crenarchaeal community assembly and microdiversity in developing soils at two sites associated with deglaciation
-
Nicol GW, Tscherko D, Chang L, et al. Crenarchaeal community assembly and microdiversity in developing soils at two sites associated with deglaciation. Environ Microbiol 2006;8:1382-93.
-
(2006)
Environ Microbiol
, vol.8
, pp. 1382-1393
-
-
Nicol, G.W.1
Tscherko, D.2
Chang, L.3
-
27
-
-
0042853314
-
Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR
-
Ochsenreiter T, Selezi D, Quaiser A, et al. Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR. Environ Microbiol 2003;5:787-97.
-
(2003)
Environ Microbiol
, vol.5
, pp. 787-797
-
-
Ochsenreiter, T.1
Selezi, D.2
Quaiser, A.3
-
28
-
-
69949127231
-
Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene
-
Offre P, Prosser JI, Nicol GW. Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene. FEMS Microbiol Ecol 2009;70:99-108.
-
(2009)
FEMS Microbiol Ecol
, vol.70
, pp. 99-108
-
-
Offre, P.1
Prosser, J.I.2
Nicol, G.W.3
-
29
-
-
33845402281
-
Biogeography and landscapescale diversity of the dominant Crenarchaeota of soil
-
Oline DK, Schmidt SK, Grant MC. Biogeography and landscapescale diversity of the dominant Crenarchaeota of soil. Microb Ecol 2006;52:480-90.
-
(2006)
Microb Ecol
, vol.52
, pp. 480-490
-
-
Oline, D.K.1
Schmidt, S.K.2
Grant, M.C.3
-
30
-
-
0033754312
-
Marine planktonic archaea take up amino acids
-
Ouverney CC, Fuhrman JA. Marine planktonic archaea take up amino acids. Appl Environ Microb 2000;66:4829-33.
-
(2000)
Appl Environ Microb
, vol.66
, pp. 4829-4833
-
-
Ouverney, C.C.1
Fuhrman, J.A.2
-
31
-
-
79959289950
-
The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology
-
Pester M, Schleper C, Wagner M. The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology. Curr Opin Microbiol 2011;14:300-6.
-
(2011)
Curr Opin Microbiol
, vol.14
, pp. 300-306
-
-
Pester, M.1
Schleper, C.2
Wagner, M.3
-
32
-
-
0030814870
-
The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations
-
Rotthauwe J-H, Witzel K, Liesack W. The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl Environ Microb 1997;63:4704-12.
-
(1997)
Appl Environ Microb
, vol.63
, pp. 4704-4712
-
-
Rotthauwe, J.-H.1
Witzel, K.2
Liesack, W.3
-
33
-
-
78649713696
-
Thaumarchaeal ammonia oxidation in an acidic forest peat soil is not influenced by ammonium amendment
-
Stopnišek N, Gubry-Rangin C, Höfferle S, et al. Thaumarchaeal ammonia oxidation in an acidic forest peat soil is not influenced by ammonium amendment. Appl Environ Microb 2010;76:7626-34.
-
(2010)
Appl Environ Microb
, vol.76
, pp. 7626-7634
-
-
Stopnišek, N.1
Gubry-Rangin, C.2
Höfferle, S.3
-
34
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994;22:4673-80.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
35
-
-
41849095617
-
Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms
-
Tourna M, Freitag TE, Nicol GW, et al. Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms. Environ Microbiol 2008;10:1357-64.
-
(2008)
Environ Microbiol
, vol.10
, pp. 1357-1364
-
-
Tourna, M.1
Freitag, T.E.2
Nicol, G.W.3
-
36
-
-
84885958115
-
pH dominates variation in tropical soil archaeal diversity and community structure
-
Tripathi BM, Kim M, Lai-Hoe A, et al. pH dominates variation in tropical soil archaeal diversity and community structure. FEMS Microbiol Ecol 2013;86:303-11.
-
(2013)
FEMS Microbiol Ecol
, vol.86
, pp. 303-311
-
-
Tripathi, B.M.1
Kim, M.2
Lai-Hoe, A.3
-
37
-
-
77958040385
-
Soil microbial communities associated with Douglas-fir and red alder stands at highand low-productivity forest sites in Oregon, USA
-
Yarwood SA, Bottomley PJ, Myrold DD. Soil microbial communities associated with Douglas-fir and red alder stands at highand low-productivity forest sites in Oregon, USA. Microb Ecol 2010;60:606-17.
-
(2010)
Microb Ecol
, vol.60
, pp. 606-617
-
-
Yarwood, S.A.1
Bottomley, P.J.2
Myrold, D.D.3
|