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Volumn 74, Issue 3, 2010, Pages 566-574

Archaea rather than bacteria control nitrification in two agricultural acidic soils

Author keywords

Ammonia oxidizing archaea; Ammonia oxidizing bacteria; Nitrification; Soil pH

Indexed keywords

ACETYLENE; AMMONIA; COMPLEMENTARY DNA;

EID: 78049277482     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2010.00971.x     Document Type: Article
Times cited : (378)

References (48)
  • 1
    • 0004027831 scopus 로고
    • Chemical Analysis of Ecological Materials
    • (), 2nd edn. Blackwell Scientific Publications, Boston, MA.
    • Allen SE (1989) Chemical Analysis of Ecological Materials, 2nd edn. Blackwell Scientific Publications, Boston, MA.
    • (1989)
    • Allen, S.E.1
  • 2
    • 0002654469 scopus 로고
    • Urease activity in neutrophilic autotrophic ammonia-oxidising bacteria isolated from acid soils
    • Allison SM & Prosser JI (1991) Urease activity in neutrophilic autotrophic ammonia-oxidising bacteria isolated from acid soils. Soil Biol Biochem 23: 45-51.
    • (1991) Soil Biol Biochem , vol.23 , pp. 45-51
    • Allison, S.M.1    Prosser, J.I.2
  • 3
    • 0000991209 scopus 로고
    • Inhibitory effect of law partial pressures of acetylene on nitrification
    • Berg P, Klemedtsson L & Rosswall T (1982) Inhibitory effect of law partial pressures of acetylene on nitrification. Soil Biol Biochem 14: 301-303.
    • (1982) Soil Biol Biochem , vol.14 , pp. 301-303
    • Berg, P.1    Klemedtsson, L.2    Rosswall, T.3
  • 5
    • 52949087143 scopus 로고    scopus 로고
    • Community composition of ammonia-oxidising bacteria and archaea in soils under stands of red alder and Douglas fir in Oregon
    • Boyle-Yarwood SA, Bottomley PJ & Myrold DD (2008) Community composition of ammonia-oxidising bacteria and archaea in soils under stands of red alder and Douglas fir in Oregon. Environ Microbiol 10: 2956-2965.
    • (2008) Environ Microbiol , vol.10 , pp. 2956-2965
    • Boyle-Yarwood, S.A.1    Bottomley, P.J.2    Myrold, D.D.3
  • 9
    • 0029138062 scopus 로고
    • Ammonium-oxidation at low pH by a chemolithotrophic bacterium belonging to the genus Nitrosospira
    • De Boer W, Klein Gunnewiek PA & Laanbroek HJ (1995) Ammonium-oxidation at low pH by a chemolithotrophic bacterium belonging to the genus Nitrosospira. Soil Biol Biochem 27: 127-132.
    • (1995) Soil Biol Biochem , vol.27 , pp. 127-132
    • De Boer, W.1    Klein Gunnewiek, P.A.2    Laanbroek, H.J.3
  • 12
    • 31444447130 scopus 로고    scopus 로고
    • The diversity and biogeography of soil bacterial communities
    • Fierer N & Jackson RB (2006) The diversity and biogeography of soil bacterial communities. P Natl Acad Sci USA 103: 626-631.
    • (2006) P Natl Acad Sci USA , vol.103 , pp. 626-631
    • Fierer, N.1    Jackson, R.B.2
  • 13
    • 0034468557 scopus 로고    scopus 로고
    • Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA based microbial community composition
    • Griffiths RI, Whiteley AS, O'Donnell AG & Bailey MJ (2000) Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA based microbial community composition. Appl Environ Microb 66: 5488-5491.
    • (2000) Appl Environ Microb , vol.66 , pp. 5488-5491
    • Griffiths, R.I.1    Whiteley, A.S.2    O'Donnell, A.G.3    Bailey, M.J.4
  • 14
    • 0040336333 scopus 로고    scopus 로고
    • Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms
    • Großkopf R, Stubner S & Liesack W (1998) Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms. Appl Environ Microb 64: 4983-4989.
    • (1998) Appl Environ Microb , vol.64 , pp. 4983-4989
    • Großkopf, R.1    Stubner, S.2    Liesack, W.3
  • 17
    • 34547686149 scopus 로고    scopus 로고
    • Quantitative analyses of the abundance and composition of ammonia-oxidizing bacteria and ammonia-oxidizing archaea of a Chinese upland red soil under long-term fertilization practices
    • He J, Shen J, Zhang L, Zhu Y, Zheng Y, Xu M & Di H (2007) Quantitative analyses of the abundance and composition of ammonia-oxidizing bacteria and ammonia-oxidizing archaea of a Chinese upland red soil under long-term fertilization practices. Environ Microbiol 9: 2364-2374.
    • (2007) Environ Microbiol , vol.9 , pp. 2364-2374
    • He, J.1    Shen, J.2    Zhang, L.3    Zhu, Y.4    Zheng, Y.5    Xu, M.6    Di, H.7
  • 18
    • 0022065534 scopus 로고
    • Suicidal inactivation and labelling of ammonia monooxygenase by acetylene
    • Hyman MR & Wood PM (1985) Suicidal inactivation and labelling of ammonia monooxygenase by acetylene. Biochem J 227: 719-725.
    • (1985) Biochem J , vol.227 , pp. 719-725
    • Hyman, M.R.1    Wood, P.M.2
  • 19
    • 0018159772 scopus 로고
    • Inhibition by acetylene of ammonia oxidation in Nitrosomonas europaea
    • Hynes RK & Knowles R (1978) Inhibition by acetylene of ammonia oxidation in Nitrosomonas europaea. FEMS Microbiol Lett 4: 319-321.
    • (1978) FEMS Microbiol Lett , vol.4 , pp. 319-321
    • Hynes, R.K.1    Knowles, R.2
  • 20
    • 67649939034 scopus 로고    scopus 로고
    • Bacteria rather than archaea dominate microbial ammonia oxidation in an agricultural soil
    • Jia ZJ & Conrad R (2009) Bacteria rather than archaea dominate microbial ammonia oxidation in an agricultural soil. Environ Microbiol 11: 1658-1671.
    • (2009) Environ Microbiol , vol.11 , pp. 1658-1671
    • Jia, Z.J.1    Conrad, R.2
  • 21
    • 0032878687 scopus 로고    scopus 로고
    • Comparison of Nitrosospira strains isolated from terrestrial environments
    • Jiang QQ & Bakken LR (1999) Comparison of Nitrosospira strains isolated from terrestrial environments. FEMS Microbiol Ecol 30: 171-186.
    • (1999) FEMS Microbiol Ecol , vol.30 , pp. 171-186
    • Jiang, Q.Q.1    Bakken, L.R.2
  • 23
    • 0025692932 scopus 로고
    • Nitrification in coniferous forest soils
    • Killham K (1990) Nitrification in coniferous forest soils. Plant Soil 128: 31-44.
    • (1990) Plant Soil , vol.128 , pp. 31-44
    • Killham, K.1
  • 24
    • 22744440684 scopus 로고    scopus 로고
    • Abundance and activity of uncultured methanotrophic bacteria involved in the consumption of atmospheric methane in two forest soils
    • Kolb S, Knief C, Dunfield PF & Conrad R (2005) Abundance and activity of uncultured methanotrophic bacteria involved in the consumption of atmospheric methane in two forest soils. Environ Microbiol 7: 1150-1161.
    • (2005) Environ Microbiol , vol.7 , pp. 1150-1161
    • Kolb, S.1    Knief, C.2    Dunfield, P.F.3    Conrad, R.4
  • 26
    • 0030901922 scopus 로고    scopus 로고
    • Analysis of ammonia-oxidizing bacteria of the β-subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR amplified 16S ribosomal DNA fragments
    • Kowalchuk GA, Stephen JR, De Boer W, Prosser JI, Embley TM & Woldendorp JW (1997) Analysis of ammonia-oxidizing bacteria of the β-subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR amplified 16S ribosomal DNA fragments. Appl Environ Microb 63: 1489-1497.
    • (1997) Appl Environ Microb , vol.63 , pp. 1489-1497
    • Kowalchuk, G.A.1    Stephen, J.R.2    De Boer, W.3    Prosser, J.I.4    Embley, T.M.5    Woldendorp, J.W.6
  • 27
    • 70449090074 scopus 로고    scopus 로고
    • Soil pH regulates the abundance and diversity of group 1.1c crenarchaeota
    • Lehtovirta LE, Prosser JI & Nicol GW (2009) Soil pH regulates the abundance and diversity of group 1.1c crenarchaeota. FEMS Microbiol Ecol 70: 367-376.
    • (2009) FEMS Microbiol Ecol , vol.70 , pp. 367-376
    • Lehtovirta, L.E.1    Prosser, J.I.2    Nicol, G.W.3
  • 29
    • 70350052417 scopus 로고    scopus 로고
    • Ammonia oxidation kinetics determine niche separation of nitrifying archaea and bacteria
    • Martens-Habbena W, Berube PM, Urakawa H, De La Torre JR & Stahl DA (2009) Ammonia oxidation kinetics determine niche separation of nitrifying archaea and bacteria. Nature 461: 976-979.
    • (2009) Nature , vol.461 , pp. 976-979
    • Martens-Habbena, W.1    Berube, P.M.2    Urakawa, H.3    De La Torre, J.R.4    Stahl, D.A.5
  • 31
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G, De Waal EC & Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microb 59: 695-700.
    • (1993) Appl Environ Microb , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 32
    • 52949137846 scopus 로고    scopus 로고
    • The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidising archaea and bacteria
    • Nicol GW, Leininger S, Schleper C & Prosser JI (2008) The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidising archaea and bacteria. Environ Microbiol 10: 2966-2978.
    • (2008) Environ Microbiol , vol.10 , pp. 2966-2978
    • Nicol, G.W.1    Leininger, S.2    Schleper, C.3    Prosser, J.I.4
  • 33
    • 33846678004 scopus 로고    scopus 로고
    • Low nitrification rates in acid Scots pine forest soils are due to pH-related factors
    • Nugroho RA, Röling WFM, Laverman AM & Verhoef HA (2007) Low nitrification rates in acid Scots pine forest soils are due to pH-related factors. Microb Ecol 53: 89-97.
    • (2007) Microb Ecol , vol.53 , pp. 89-97
    • Nugroho, R.A.1    Röling, W.F.M.2    Laverman, A.M.3    Verhoef, H.A.4
  • 34
    • 0042853314 scopus 로고    scopus 로고
    • Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR
    • Ochsenreiter T, Selezi D, Quaiser A, Bonch-Osmolovskaya L & Schleper C (2003) Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR. Environ Microbiol 5: 787-797.
    • (2003) Environ Microbiol , vol.5 , pp. 787-797
    • Ochsenreiter, T.1    Selezi, D.2    Quaiser, A.3    Bonch-Osmolovskaya, L.4    Schleper, C.5
  • 35
    • 69949127231 scopus 로고    scopus 로고
    • Growth of ammonia-oxidizing archaea is inhibited by acetylene
    • Offre P, Prosser JI & Nicol GW (2009) Growth of ammonia-oxidizing archaea is inhibited by acetylene. FEMS Microbiol Ecol 70: 99-108.
    • (2009) FEMS Microbiol Ecol , vol.70 , pp. 99-108
    • Offre, P.1    Prosser, J.I.2    Nicol, G.W.3
  • 37
    • 0034016511 scopus 로고    scopus 로고
    • Quantitative analysis of ammonia oxidizing bacteria using competitive PCR
    • Phillips CJ, Paul EA & Prosser JI (2000) Quantitative analysis of ammonia oxidizing bacteria using competitive PCR. FEMS Microbiol Ecol 32: 167-175.
    • (2000) FEMS Microbiol Ecol , vol.32 , pp. 167-175
    • Phillips, C.J.1    Paul, E.A.2    Prosser, J.I.3
  • 38
    • 0036427445 scopus 로고    scopus 로고
    • Cultivation-based and molecular approaches to characterization of terrestrial and aquatic nitrifiers
    • Prosser JI & Embley TM (2002) Cultivation-based and molecular approaches to characterization of terrestrial and aquatic nitrifiers. Antonie van Leeuwenhoek 81: 165-179.
    • (2002) Antonie van Leeuwenhoek , vol.81 , pp. 165-179
    • Prosser, J.I.1    Embley, T.M.2
  • 39
    • 52949113790 scopus 로고    scopus 로고
    • Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment
    • Prosser JI & Nicol GW (2008) Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment. Environ Microbiol 10: 2931-2941.
    • (2008) Environ Microbiol , vol.10 , pp. 2931-2941
    • Prosser, J.I.1    Nicol, G.W.2
  • 41
    • 0031662047 scopus 로고    scopus 로고
    • Anaerobic ammonia oxidation by cell-free extracts of Nitrosomonas eutropha
    • Schmidt I & Bock E (1998) Anaerobic ammonia oxidation by cell-free extracts of Nitrosomonas eutropha. Antonie van Leeuwenhoek 73: 271-278.
    • (1998) Antonie van Leeuwenhoek , vol.73 , pp. 271-278
    • Schmidt, I.1    Bock, E.2
  • 42
    • 43449114462 scopus 로고    scopus 로고
    • Abundance and composition of ammonia-oxidizing bacteria and ammonia-oxidizing archaea communities of an alkaline sandy loam
    • Shen JP, Zhang LM, Zhu YG, Zhang JB & He JZ (2008) Abundance and composition of ammonia-oxidizing bacteria and ammonia-oxidizing archaea communities of an alkaline sandy loam. Environ Microbiol 10: 1601-1611.
    • (2008) Environ Microbiol , vol.10 , pp. 1601-1611
    • Shen, J.P.1    Zhang, L.M.2    Zhu, Y.G.3    Zhang, J.B.4    He, J.Z.5
  • 44
    • 0029805297 scopus 로고    scopus 로고
    • Molecular diversity of soil and marine 16S rRNA gene sequences related to β-subgroup ammonia-oxidizing bacteria
    • Stephen JR, McCaig AE, Smith Z, Prosser JI & Embley TM (1996) Molecular diversity of soil and marine 16S rRNA gene sequences related to β-subgroup ammonia-oxidizing bacteria. Appl Environ Microb 62: 4147-4154.
    • (1996) Appl Environ Microb , vol.62 , pp. 4147-4154
    • Stephen, J.R.1    McCaig, A.E.2    Smith, Z.3    Prosser, J.I.4    Embley, T.M.5
  • 45
    • 0031904158 scopus 로고    scopus 로고
    • Analysis of β-subgroup proteobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing
    • Stephen JR, Kowalchuk GA, Bruns MAV, McCaig AE, Phillips CJ, Embley TM & Prosser JI (1998) Analysis of β-subgroup proteobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing. Appl Environ Microb 64: 2958-2965.
    • (1998) Appl Environ Microb , vol.64 , pp. 2958-2965
    • Stephen, J.R.1    Kowalchuk, G.A.2    Bruns, M.A.V.3    McCaig, A.E.4    Phillips, C.J.5    Embley, T.M.6    Prosser, J.I.7
  • 46
    • 41849095617 scopus 로고    scopus 로고
    • Growth, activity and temperature responses of ammonia-oxidising archaea and bacteria in soil microcosms
    • Tourna M, Freitag TE, Nicol GW & Prosser JI (2008) Growth, activity and temperature responses of ammonia-oxidising archaea and bacteria in soil microcosms. Environ Microbiol 10: 1357-1364.
    • (2008) Environ Microbiol , vol.10 , pp. 1357-1364
    • Tourna, M.1    Freitag, T.E.2    Nicol, G.W.3    Prosser, J.I.4
  • 47
    • 28644435323 scopus 로고    scopus 로고
    • Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling
    • Treusch AH, Leininger S, Kletzin A, Schuster AC, Klenk HP & Schleper C (2005) Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environ Microbiol 7: 1985-1995.
    • (2005) Environ Microbiol , vol.7 , pp. 1985-1995
    • Treusch, A.H.1    Leininger, S.2    Kletzin, A.3    Schuster, A.C.4    Klenk, H.P.5    Schleper, C.6
  • 48
    • 11144354360 scopus 로고    scopus 로고
    • Environmental genome shotgun sequencing of the Sargasso sea
    • Venter JC, Remington K, Heidelberg JF et al. (2004) Environmental genome shotgun sequencing of the Sargasso sea. Science 304: 66-74.
    • (2004) Science , vol.304 , pp. 66-74
    • Venter, J.C.1    Remington, K.2    Heidelberg, J.F.3


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