메뉴 건너뛰기




Volumn 80, Issue 1, 2012, Pages 114-123

Stimulation of thaumarchaeal ammonia oxidation by ammonia derived from organic nitrogen but not added inorganic nitrogen

Author keywords

Ammonia oxidizers; Mineralization; Nitrification; Soil; Thaumarchaea

Indexed keywords

AMMONIA; FERTILIZER; NITROGEN;

EID: 84857913741     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2011.01275.x     Document Type: Article
Times cited : (164)

References (61)
  • 1
    • 57649114800 scopus 로고    scopus 로고
    • Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic
    • Agogue H, Brink M, Dinasquet J & Herndl GJ (2008) Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic. Nat Lett 456: 788-791.
    • (2008) Nat Lett , vol.456 , pp. 788-791
    • Agogue, H.1    Brink, M.2    Dinasquet, J.3    Herndl, G.J.4
  • 2
    • 0002548207 scopus 로고
    • Ammonia oxidation at low pH by attached populations of nitrifying bacteria
    • Allison SM & Prosser JI (1993) Ammonia oxidation at low pH by attached populations of nitrifying bacteria. Soil Biol Biochem 25: 935-941.
    • (1993) Soil Biol Biochem , vol.25 , pp. 935-941
    • Allison, S.M.1    Prosser, J.I.2
  • 3
    • 68849124175 scopus 로고    scopus 로고
    • Differences in the activity and bacterial community structure of drained grassland and forest peat soils
    • Ausec L, Kraigher B & Mandič-Mulec I (2009) Differences in the activity and bacterial community structure of drained grassland and forest peat soils. Soil Biol Biochem 41: 1874-1881.
    • (2009) Soil Biol Biochem , vol.41 , pp. 1874-1881
    • Ausec, L.1    Kraigher, B.2    Mandič-Mulec, I.3
  • 4
    • 35148865682 scopus 로고    scopus 로고
    • Distribution of cren- and euryarchaeota in Scots pine mycorrhizospheres and boreal forest humus
    • Bomberg M & Timonen S (2007) Distribution of cren- and euryarchaeota in Scots pine mycorrhizospheres and boreal forest humus. Microb Ecol 54: 406-416.
    • (2007) Microb Ecol , vol.54 , pp. 406-416
    • Bomberg, M.1    Timonen, S.2
  • 5
    • 18444366773 scopus 로고    scopus 로고
    • Controls on nitrogen cycling in terrestrial ecosystems: a synthetic analysis of literature data
    • Booth MS, Stark JM & Rastetter E (2005) Controls on nitrogen cycling in terrestrial ecosystems: a synthetic analysis of literature data. Ecol Monogr 75: 139-157.
    • (2005) Ecol Monogr , vol.75 , pp. 139-157
    • Booth, M.S.1    Stark, J.M.2    Rastetter, E.3
  • 6
    • 39149118031 scopus 로고    scopus 로고
    • Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota
    • Brochier-Armanet CB, Boussau S, Gribaldo S & Forterre P (2008) Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota. Nat Rev Microbiol 6: 245-252.
    • (2008) Nat Rev Microbiol , vol.6 , pp. 245-252
    • Brochier-Armanet, C.B.1    Boussau, S.2    Gribaldo, S.3    Forterre, P.4
  • 7
    • 0035408582 scopus 로고    scopus 로고
    • Autotrophic ammonia oxidation at low pH through urea hydrolysis
    • Burton SAQ & Prosser J (2001) Autotrophic ammonia oxidation at low pH through urea hydrolysis. Appl Environ Microbiol 67: 2952-2957.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 2952-2957
    • Burton, S.A.Q.1    Prosser, J.2
  • 8
    • 58149332207 scopus 로고    scopus 로고
    • Ammonia-oxidizing archaea: important players in paddy rhizosphere soil?
    • Chen X-P, Zhu Y-G, Xia Y, Shen J-P & He J-Z (2008) Ammonia-oxidizing archaea: important players in paddy rhizosphere soil? Environ Microbiol 10: 1978-1987.
    • (2008) Environ Microbiol , vol.10 , pp. 1978-1987
    • Chen, X.-P.1    Zhu, Y.-G.2    Xia, Y.3    Shen, J.-P.4    He, J.-Z.5
  • 9
    • 0034973916 scopus 로고    scopus 로고
    • Nitrification in acid soils: micro-organisms and mechanisms
    • De Boer W & Kowalchuk GA (2001) Nitrification in acid soils: micro-organisms and mechanisms. Soil Biol Biochem 33: 853-866.
    • (2001) Soil Biol Biochem , vol.33 , pp. 853-866
    • De Boer, W.1    Kowalchuk, G.A.2
  • 13
    • 0036935771 scopus 로고    scopus 로고
    • The use of a nitrification inhibitor, dicyandiamide (DCD), to decrease nitrate leaching and nitrous oxide emissions in a simulated grazed and irrigated grassland
    • Di HJ & Cameron KC (2002) The use of a nitrification inhibitor, dicyandiamide (DCD), to decrease nitrate leaching and nitrous oxide emissions in a simulated grazed and irrigated grassland. Soil Use Manage 18: 395-403.
    • (2002) Soil Use Manage , vol.18 , pp. 395-403
    • Di, H.J.1    Cameron, K.C.2
  • 17
    • 0034468557 scopus 로고    scopus 로고
    • Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition
    • Griffiths RI, Whiteley AS, O'Donnell AG & Bailey MJ (2000) Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition. Appl Environ Microbiol 66: 5488-5491.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 5488-5491
    • Griffiths, R.I.1    Whiteley, A.S.2    O'Donnell, A.G.3    Bailey, M.J.4
  • 18
    • 78049277482 scopus 로고    scopus 로고
    • Archaea rather than bacteria control nitrification in two agricultural acidic soils
    • Gubry-Rangin C, Prosser JI & Nicol GW (2010) Archaea rather than bacteria control nitrification in two agricultural acidic soils. FEMS Microbiol Ecol 74: 566-574.
    • (2010) FEMS Microbiol Ecol , vol.74 , pp. 566-574
    • Gubry-Rangin, C.1    Prosser, J.I.2    Nicol, G.W.3
  • 19
    • 33646260901 scopus 로고    scopus 로고
    • Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota
    • Hallam SJ, Mincer TJ, Schleper C, Preston CM, Roberts K, Richardson PM & DeLong EF (2006) Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota. PLoS Biol 4: 520-536.
    • (2006) PLoS Biol , vol.4 , pp. 520-536
    • Hallam, S.J.1    Mincer, T.J.2    Schleper, C.3    Preston, C.M.4    Roberts, K.5    Richardson, P.M.6    DeLong, E.F.7
  • 22
    • 78649337295 scopus 로고    scopus 로고
    • Ammonium supply rate influences archaeal and bacterial ammonia oxidizers in a wetland soil vertical profile
    • Höfferle Š, Nicol GW, Pal L, Hacin J, Prosser JI & Mandic-Mulec I (2010) Ammonium supply rate influences archaeal and bacterial ammonia oxidizers in a wetland soil vertical profile. FEMS Microbiol Ecol 74: 302-315.
    • (2010) FEMS Microbiol Ecol , vol.74 , pp. 302-315
    • Höfferle, S.1    Nicol, G.W.2    Pal, L.3    Hacin, J.4    Prosser, J.I.5    Mandic-Mulec, I.6
  • 24
    • 67649939034 scopus 로고    scopus 로고
    • Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil
    • Jia ZR & Conrad R (2009) Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil. Environ Microbiol 11: 1658-1671.
    • (2009) Environ Microbiol , vol.11 , pp. 1658-1671
    • Jia, Z.R.1    Conrad, R.2
  • 25
    • 0032784378 scopus 로고    scopus 로고
    • Diversity of soil Archaea in boreal forest before, and after clear-cutting and prescribed burning
    • Jurgens G & Saano A (1999) Diversity of soil Archaea in boreal forest before, and after clear-cutting and prescribed burning. FEMS Microbiol Ecol 29: 205-213.
    • (1999) FEMS Microbiol Ecol , vol.29 , pp. 205-213
    • Jurgens, G.1    Saano, A.2
  • 26
    • 34249106390 scopus 로고    scopus 로고
    • High abundance of Crenarchaeota in a temperate acidic forest soil
    • Kemnitz D, Kolb S & Conrad R (2007) High abundance of Crenarchaeota in a temperate acidic forest soil. FEMS Microbiol Ecol 60: 442-448.
    • (2007) FEMS Microbiol Ecol , vol.60 , pp. 442-448
    • Kemnitz, D.1    Kolb, S.2    Conrad, R.3
  • 28
    • 70449090074 scopus 로고    scopus 로고
    • Soil pH regulates the abundance and diversity of group 1.1c Crenarchaeota
    • Lehtovirta LE, Prosser JI & Nicol GW (2009) Soil pH regulates the abundance and diversity of group 1.1c Crenarchaeota. FEMS Microbiol Ecol 70: 367-376.
    • (2009) FEMS Microbiol Ecol , vol.70 , pp. 367-376
    • Lehtovirta, L.E.1    Prosser, J.I.2    Nicol, G.W.3
  • 31
    • 70350052417 scopus 로고    scopus 로고
    • Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria
    • Martens-Habbena W, Berube PM, Urakawa H, de la Torre JR & Stahl DA (2009) Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria. Nature 461: 976-981.
    • (2009) Nature , vol.461 , pp. 976-981
    • Martens-Habbena, W.1    Berube, P.M.2    Urakawa, H.3    de la Torre, J.R.4    Stahl, D.A.5
  • 32
    • 0035487280 scopus 로고    scopus 로고
    • Numerical analysis of grassland bacterial community structure under different land management regimes by using 16S ribosomal DNA sequence date and denaturing gradient gel electrophoresis banding patterns
    • McCaig AE, Glover LA & Prosser JI (2001) Numerical analysis of grassland bacterial community structure under different land management regimes by using 16S ribosomal DNA sequence date and denaturing gradient gel electrophoresis banding patterns. Appl Environ Microbiol 67: 4554-4559.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 4554-4559
    • McCaig, A.E.1    Glover, L.A.2    Prosser, J.I.3
  • 33
    • 14344252220 scopus 로고    scopus 로고
    • Primary succession of soil Crenarchaeota across a receding glacier foreland
    • Nicol GW, Tscherko D, Embley TM & Prosser JI (2005) Primary succession of soil Crenarchaeota across a receding glacier foreland. Environ Microbiol 7: 337-347.
    • (2005) Environ Microbiol , vol.7 , pp. 337-347
    • Nicol, G.W.1    Tscherko, D.2    Embley, T.M.3    Prosser, J.I.4
  • 34
    • 52949137846 scopus 로고    scopus 로고
    • The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria
    • Nicol GW, Leininger S, Schleper C & Prosser JI (2008) The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria. Environ Microbiol 10: 2966-2978.
    • (2008) Environ Microbiol , vol.10 , pp. 2966-2978
    • Nicol, G.W.1    Leininger, S.2    Schleper, C.3    Prosser, J.I.4
  • 35
    • 69949127231 scopus 로고    scopus 로고
    • Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene
    • Offre P, Prosser JI & Nicol GW (2009) Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene. FEMS Microbiol Ecol 70: 99-108.
    • (2009) FEMS Microbiol Ecol , vol.70 , pp. 99-108
    • Offre, P.1    Prosser, J.I.2    Nicol, G.W.3
  • 36
    • 33845402281 scopus 로고    scopus 로고
    • Biogeography and landscape-scale diversity of the dominant crenarchaeota of soil
    • Oline DK, Schmidt SK & Grant MC (2006) Biogeography and landscape-scale diversity of the dominant crenarchaeota of soil. Microb Ecol 52: 480-490.
    • (2006) Microb Ecol , vol.52 , pp. 480-490
    • Oline, D.K.1    Schmidt, S.K.2    Grant, M.C.3
  • 37
    • 0033754312 scopus 로고    scopus 로고
    • Marine planktonic Archaea take up amino acids
    • Ouverney CC & Fuhrman JA (2000) Marine planktonic Archaea take up amino acids. Appl Environ Microbiol 66: 4829-4833.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4829-4833
    • Ouverney, C.C.1    Fuhrman, J.A.2
  • 38
    • 52949113790 scopus 로고    scopus 로고
    • Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment
    • Prosser JI & Nicol GW (2008) Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment. Environ Microbiol 10: 2931-2941.
    • (2008) Environ Microbiol , vol.10 , pp. 2931-2941
    • Prosser, J.I.1    Nicol, G.W.2
  • 39
    • 79951480123 scopus 로고    scopus 로고
    • R Development Core Team R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0, URL .
    • R Development Core Team (2010) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0, URL .
    • (2010) R: A language and environment for statistical computing
  • 40
    • 0032804175 scopus 로고    scopus 로고
    • Improving nitrogen use efficiency for cereal production
    • Raun WR & Johnson GV (1999) Improving nitrogen use efficiency for cereal production. Agron J 91: 357-363.
    • (1999) Agron J , vol.91 , pp. 357-363
    • Raun, W.R.1    Johnson, G.V.2
  • 42
    • 0030814870 scopus 로고    scopus 로고
    • The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations
    • Rotthauwe J-H, Witzel K-P & Liesack W (1997) The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl Environ Microbiol 63: 4704-4712.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 4704-4712
    • Rotthauwe, J.-H.1    Witzel, K.-P.2    Liesack, W.3
  • 43
    • 0021600983 scopus 로고
    • Nitrate leaching from grassland
    • Ryden JC, Ball PR & Garwood EA (1984) Nitrate leaching from grassland. Nature 311: 50-53.
    • (1984) Nature , vol.311 , pp. 50-53
    • Ryden, J.C.1    Ball, P.R.2    Garwood, E.A.3
  • 44
    • 58549087182 scopus 로고    scopus 로고
    • Dynamics and functional relevance of ammonia-oxidizing archaea in two agricultural soils
    • Schauss K, Focks A, Leininger S et al. (2009) Dynamics and functional relevance of ammonia-oxidizing archaea in two agricultural soils. Environ Microbiol 11: 446-456.
    • (2009) Environ Microbiol , vol.11 , pp. 446-456
    • Schauss, K.1    Focks, A.2    Leininger, S.3
  • 46
    • 58549094586 scopus 로고    scopus 로고
    • On the fate of anthropogenic nitrogen
    • Schlesinger WH (2009) On the fate of anthropogenic nitrogen. P Natl Acad Sci USA 106: 203-208.
    • (2009) P Natl Acad Sci USA , vol.106 , pp. 203-208
    • Schlesinger, W.H.1
  • 47
    • 41849085222 scopus 로고    scopus 로고
    • The potential of nitrification inhibitors to manage the pollution effect of nitrogen fertilizers in agricultural and other soils: a review
    • Singh SN & Verma A (2007) The potential of nitrification inhibitors to manage the pollution effect of nitrogen fertilizers in agricultural and other soils: a review. Environ Pract 9: 266-279.
    • (2007) Environ Pract , vol.9 , pp. 266-279
    • Singh, S.N.1    Verma, A.2
  • 51
    • 70350449436 scopus 로고    scopus 로고
    • Evidence for biological nitrification inhibition in Brachiaria pastures
    • Subbarao GV, Nakahara K, Hurtado MP et al. (2009) Evidence for biological nitrification inhibition in Brachiaria pastures. P Natl Acad Sci USA 106: 17302-17307.
    • (2009) P Natl Acad Sci USA , vol.106 , pp. 17302-17307
    • Subbarao, G.V.1    Nakahara, K.2    Hurtado, M.P.3
  • 52
    • 32944469326 scopus 로고    scopus 로고
    • Archaeal uptake of enantiomeric amino acids in the meso- and bathypelagic waters of the North Atlantic
    • Teira E, van Aken H, Veth C & Herndl GJ (2006) Archaeal uptake of enantiomeric amino acids in the meso- and bathypelagic waters of the North Atlantic. Limnol Oceanogr 51: 60-69.
    • (2006) Limnol Oceanogr , vol.51 , pp. 60-69
    • Teira, E.1    van Aken, H.2    Veth, C.3    Herndl, G.J.4
  • 53
    • 85099869242 scopus 로고    scopus 로고
    • Soil pH and soil acidity
    • Bigham JM, ed) Soil Science Society of America, Madison, WI.
    • Thomas GW (1996) Soil pH and soil acidity. Methods of Soil Analyses (Bigham JM, ed), pp. 475-490. Soil Science Society of America, Madison, WI.
    • (1996) Methods of Soil Analyses , pp. 475-490
    • Thomas, G.W.1
  • 54
    • 41849095617 scopus 로고    scopus 로고
    • Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms
    • Tourna M, Freitag TE, Nicol GW & Prosser JI (2008) Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms. Environ Microbiol 10: 1357-1364.
    • (2008) Environ Microbiol , vol.10 , pp. 1357-1364
    • Tourna, M.1    Freitag, T.E.2    Nicol, G.W.3    Prosser, J.I.4
  • 55
    • 79957684288 scopus 로고    scopus 로고
    • Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil
    • Tourna M, Stieglmeier M, Spang A et al. (2011) Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil. P Natl Acad Sci USA 108: 8420-8425.
    • (2011) P Natl Acad Sci USA , vol.108 , pp. 8420-8425
    • Tourna, M.1    Stieglmeier, M.2    Spang, A.3
  • 56
    • 28644435323 scopus 로고    scopus 로고
    • Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling
    • Treusch AH, Leininger S, Schleper C, Kietzin A, Klenk H-P & Schuster SC (2005) Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environ Microbiol 7: 1985-1995.
    • (2005) Environ Microbiol , vol.7 , pp. 1985-1995
    • Treusch, A.H.1    Leininger, S.2    Schleper, C.3    Kietzin, A.4    Klenk, H.-P.5    Schuster, S.C.6
  • 57
    • 79956265889 scopus 로고    scopus 로고
    • Ammonia concentration determines differential growth of ammonia-oxidising archaea and bacteria in soil microcosms
    • Verhamme DT, Prosser JI & Nicol GW (2011) Ammonia concentration determines differential growth of ammonia-oxidising archaea and bacteria in soil microcosms. ISME J 5: 1067-1071.
    • (2011) ISME J , vol.5 , pp. 1067-1071
    • Verhamme, D.T.1    Prosser, J.I.2    Nicol, G.W.3
  • 58
    • 3442887788 scopus 로고    scopus 로고
    • A meta-evaluation of nitrapyrin agronomic and environmental effectiveness with emphasis on corn production in the Midwestern USA
    • Wolt JD (2004) A meta-evaluation of nitrapyrin agronomic and environmental effectiveness with emphasis on corn production in the Midwestern USA. Nutr Cycl Agroecosyst 69: 23-41.
    • (2004) Nutr Cycl Agroecosyst , vol.69 , pp. 23-41
    • Wolt, J.D.1
  • 60
    • 52649165224 scopus 로고    scopus 로고
    • Detection, isolation and characterization of a root-exuded compound, methyl 3-(4-hydroxyphenyl)propionate, responsible for biological nitrification inhibition by sorghum (Sorghum bicolor)
    • Zakir HAKM, Subbarao GV, Pearse SJ et al. (2008) Detection, isolation and characterization of a root-exuded compound, methyl 3-(4-hydroxyphenyl)propionate, responsible for biological nitrification inhibition by sorghum (Sorghum bicolor). New Phytol 180: 442-451.
    • (2008) New Phytol , vol.180 , pp. 442-451
    • Zakir, H.A.K.M.1    Subbarao, G.V.2    Pearse, S.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.