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Volumn 86, Issue 2, 2013, Pages 303-311

PH dominates variation in tropical soil archaeal diversity and community structure

Author keywords

Archaeal communities; Land use; Pyrosequencing; Soil pH; Thaumarchaeota; Tropics

Indexed keywords

RNA 16S;

EID: 84885958115     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/1574-6941.12163     Document Type: Article
Times cited : (94)

References (46)
  • 1
    • 77950057025 scopus 로고    scopus 로고
    • Biogeography of soil archaea and bacteria along a steep precipitation gradient
    • Angel R, Soares MIM, Ungar ED & Gillor O (2010) Biogeography of soil archaea and bacteria along a steep precipitation gradient. ISME J 4: 553-563.
    • (2010) ISME J , vol.4 , pp. 553-563
    • Angel, R.1    Soares, M.I.M.2    Ungar, E.D.3    Gillor, O.4
  • 2
    • 40949111460 scopus 로고    scopus 로고
    • A hotspot for cold Crenarchaeota in the neuston of high mountain lakes
    • Auguet JC & Casamayor EO (2008) A hotspot for cold Crenarchaeota in the neuston of high mountain lakes. Environ Microbiol 10: 1080-1086.
    • (2008) Environ Microbiol , vol.10 , pp. 1080-1086
    • Auguet, J.C.1    Casamayor, E.O.2
  • 3
    • 76349125984 scopus 로고    scopus 로고
    • Global ecological patterns in uncultured archaea
    • Auguet JC, Barberan A & Casamayor EO (2010) Global ecological patterns in uncultured archaea. ISME J 4: 182-190.
    • (2010) ISME J , vol.4 , pp. 182-190
    • Auguet, J.C.1    Barberan, A.2    Casamayor, E.O.3
  • 4
    • 77953934371 scopus 로고    scopus 로고
    • Crenarchaeota affiliated with group 1.1b are prevalent in coastal mineral soils of the Ross Sea region of Antarctica
    • Ayton J, Aislabie J, Barker GM, Saul D & Turner S (2010) Crenarchaeota affiliated with group 1.1b are prevalent in coastal mineral soils of the Ross Sea region of Antarctica. Environ Microbiol 12: 689-703.
    • (2010) Environ Microbiol , vol.12 , pp. 689-703
    • Ayton, J.1    Aislabie, J.2    Barker, G.M.3    Saul, D.4    Turner, S.5
  • 6
    • 84866156946 scopus 로고    scopus 로고
    • Archaeal abundance across a pH gradient in an arable soil and its relationship to bacterial and fungal growth rates
    • Bengtson P, Sterngren AE & Rousk J (2012) Archaeal abundance across a pH gradient in an arable soil and its relationship to bacterial and fungal growth rates. Appl Environ Microbiol 78: 5906-5911.
    • (2012) Appl Environ Microbiol , vol.78 , pp. 5906-5911
    • Bengtson, P.1    Sterngren, A.E.2    Rousk, J.3
  • 7
    • 0030860238 scopus 로고    scopus 로고
    • Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation
    • Borneman J & Triplett EW (1997) Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl Environ Microbiol 63: 2647-2653.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 2647-2653
    • Borneman, J.1    Triplett, E.W.2
  • 8
    • 39149118031 scopus 로고    scopus 로고
    • Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota
    • Brochier-Armanet C, Boussau B, Gribaldo S & Forterre P (2008) Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota. Nat Rev Microbiol 6: 245-252.
    • (2008) Nat Rev Microbiol , vol.6 , pp. 245-252
    • Brochier-Armanet, C.1    Boussau, B.2    Gribaldo, S.3    Forterre, P.4
  • 9
    • 33745767937 scopus 로고    scopus 로고
    • Vertical profiles of methanogenesis and methanogens in two contrasting acidic peatlands in central New York State, USA
    • Cadillo-Quiroz H, Brauer S, Yashiro E, Sun C, Yavitt J & Zinder S (2006) Vertical profiles of methanogenesis and methanogens in two contrasting acidic peatlands in central New York State, USA. Environ Microbiol 8: 1428-1440.
    • (2006) Environ Microbiol , vol.8 , pp. 1428-1440
    • Cadillo-Quiroz, H.1    Brauer, S.2    Yashiro, E.3    Sun, C.4    Yavitt, J.5    Zinder, S.6
  • 11
    • 72749087981 scopus 로고    scopus 로고
    • Bacteria diversity and microbial biomass in forest, pasture and fallow soils in the southwestern Amazon basin
    • Cenciani K, Lambais MR, Cerri CC, de Azevedo LCB & Feigl BJ (2009) Bacteria diversity and microbial biomass in forest, pasture and fallow soils in the southwestern Amazon basin. Rev Bras Cienc Solo 33: 907-916.
    • (2009) Rev Bras Cienc Solo , vol.33 , pp. 907-916
    • Cenciani, K.1    Lambais, M.R.2    Cerri, C.C.3    de Azevedo, L.C.B.4    Feigl, B.J.5
  • 12
    • 33744483524 scopus 로고    scopus 로고
    • Archaeal habitats - from the extreme to the ordinary
    • Chaban B, Ng SYM & Jarrell KF (2006) Archaeal habitats - from the extreme to the ordinary. Can J Microbiol 52: 73-116.
    • (2006) Can J Microbiol , vol.52 , pp. 73-116
    • Chaban, B.1    Ng, S.Y.M.2    Jarrell, K.F.3
  • 14
    • 0031769609 scopus 로고    scopus 로고
    • Everything in moderation: archaea as 'non-extremophiles'
    • DeLong EF (1998) Everything in moderation: archaea as 'non-extremophiles'. Curr Opin Genet Dev 8: 649-654.
    • (1998) Curr Opin Genet Dev , vol.8 , pp. 649-654
    • DeLong, E.F.1
  • 16
    • 33947173164 scopus 로고    scopus 로고
    • Evidence for hydrothermal archaea within the basaltic flanks of the East Pacific Rise
    • Ehrhardt CJ, Haymon RM, Lamontagne MG & Holden PA (2007) Evidence for hydrothermal archaea within the basaltic flanks of the East Pacific Rise. Environ Microbiol 9: 900-912.
    • (2007) Environ Microbiol , vol.9 , pp. 900-912
    • Ehrhardt, C.J.1    Haymon, R.M.2    Lamontagne, M.G.3    Holden, P.A.4
  • 18
    • 80055015145 scopus 로고    scopus 로고
    • Primary forests are irreplaceable for sustaining tropical biodiversity
    • Gibson L, Lee TM, Koh LP et al. (2011) Primary forests are irreplaceable for sustaining tropical biodiversity. Nature 478: 378-381.
    • (2011) Nature , vol.478 , pp. 378-381
    • Gibson, L.1    Lee, T.M.2    Koh, L.P.3
  • 19
    • 84855518132 scopus 로고    scopus 로고
    • Niche specialization of terrestrial archaeal ammonia oxidizers
    • Gubry-Rangin C, Hai B, Quince C et al. (2011) Niche specialization of terrestrial archaeal ammonia oxidizers. P Natl Acad Sci USA 108: 21206-21211.
    • (2011) P Natl Acad Sci USA , vol.108 , pp. 21206-21211
    • Gubry-Rangin, C.1    Hai, B.2    Quince, C.3
  • 20
    • 83155185433 scopus 로고    scopus 로고
    • Effect of genetically modified poplars on soil microbial communities during the phytoremediation of waste mine tailings
    • Hur M, Kim Y, Song HR, Kim JM, Choi YI & Yi H (2011) Effect of genetically modified poplars on soil microbial communities during the phytoremediation of waste mine tailings. Appl Environ Microbiol 77: 7611-7619.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 7611-7619
    • Hur, M.1    Kim, Y.2    Song, H.R.3    Kim, J.M.4    Choi, Y.I.5    Yi, H.6
  • 21
    • 70349459579 scopus 로고    scopus 로고
    • Changes in land use alter the structure of bacterial communities in Western Amazon soils
    • Jesus ED, Marsh TL, Tiedje JM & Moreira FMD (2009) Changes in land use alter the structure of bacterial communities in Western Amazon soils. ISME J 3: 1004-1011.
    • (2009) ISME J , vol.3 , pp. 1004-1011
    • Jesus, E.D.1    Marsh, T.L.2    Tiedje, J.M.3    Moreira, F.M.D.4
  • 22
    • 34249106390 scopus 로고    scopus 로고
    • High abundance of Crenarchaeota in a temperate acidic forest soil
    • Kemnitz D, Kolb S & Conrad R (2007) High abundance of Crenarchaeota in a temperate acidic forest soil. FEMS Microbiol Ecol 60: 442-448.
    • (2007) FEMS Microbiol Ecol , vol.60 , pp. 442-448
    • Kemnitz, D.1    Kolb, S.2    Conrad, R.3
  • 23
    • 33846641846 scopus 로고    scopus 로고
    • General characteristics and important model organisms
    • Cavicchioli R, eds) ASM Press, Washington DC, WA.
    • Kletzin A (2007) General characteristics and important model organisms. Archaea: Cellular and Molecular Biology, (Cavicchioli R, eds), pp. 14-93. ASM Press, Washington DC, WA.
    • (2007) Archaea: Cellular and Molecular Biology , pp. 14-93
    • Kletzin, A.1
  • 24
    • 67651247607 scopus 로고    scopus 로고
    • Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale
    • Lauber CL, Hamady M, Knight R & Fierer N (2009) Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl Environ Microbiol 75: 5111-5120.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 5111-5120
    • Lauber, C.L.1    Hamady, M.2    Knight, R.3    Fierer, N.4
  • 25
    • 70449090074 scopus 로고    scopus 로고
    • Soil pH regulates the abundance and diversity of Group 1.1c Crenarchaeota
    • Lehtovirta LE, Prosser JI & Nicol GW (2009) Soil pH regulates the abundance and diversity of Group 1.1c Crenarchaeota. FEMS Microbiol Ecol 70: 367-376.
    • (2009) FEMS Microbiol Ecol , vol.70 , pp. 367-376
    • Lehtovirta, L.E.1    Prosser, J.I.2    Nicol, G.W.3
  • 27
    • 53949086905 scopus 로고    scopus 로고
    • High archaeal richness in the water column of a freshwater sulfurous karstic lake along an interannual study
    • Lliros M, Casamayor EO & Borrego C (2008) High archaeal richness in the water column of a freshwater sulfurous karstic lake along an interannual study. FEMS Microbiol Ecol 66: 331-342.
    • (2008) FEMS Microbiol Ecol , vol.66 , pp. 331-342
    • Lliros, M.1    Casamayor, E.O.2    Borrego, C.3
  • 30
    • 14344252220 scopus 로고    scopus 로고
    • Primary succession of soil Crenarchaeota across a receding glacier foreland
    • Nicol GW, Tscherko D, Embley TM & Prosser JI (2005) Primary succession of soil Crenarchaeota across a receding glacier foreland. Environ Microbiol 7: 337-347.
    • (2005) Environ Microbiol , vol.7 , pp. 337-347
    • Nicol, G.W.1    Tscherko, D.2    Embley, T.M.3    Prosser, J.I.4
  • 31
    • 33947221558 scopus 로고    scopus 로고
    • Afforestation of moorland leads to changes in crenarchaeal community structure
    • Nicol GW, Campbell CD, Chapman SJ & Prosser JI (2007) Afforestation of moorland leads to changes in crenarchaeal community structure. FEMS Microbiol Ecol 60: 51-59.
    • (2007) FEMS Microbiol Ecol , vol.60 , pp. 51-59
    • Nicol, G.W.1    Campbell, C.D.2    Chapman, S.J.3    Prosser, J.I.4
  • 32
    • 52949137846 scopus 로고    scopus 로고
    • The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria
    • Nicol GW, Leininger S, Schleper C & Prosser JI (2008) The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria. Environ Microbiol 10: 2966-2978.
    • (2008) Environ Microbiol , vol.10 , pp. 2966-2978
    • Nicol, G.W.1    Leininger, S.2    Schleper, C.3    Prosser, J.I.4
  • 33
    • 0042853314 scopus 로고    scopus 로고
    • Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR
    • Ochsenreiter T, Selezi D, Quaiser A, Bonch-Osmolovskaya L & Schleper C (2003) Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR. Environ Microbiol 5: 787-797.
    • (2003) Environ Microbiol , vol.5 , pp. 787-797
    • Ochsenreiter, T.1    Selezi, D.2    Quaiser, A.3    Bonch-Osmolovskaya, L.4    Schleper, C.5
  • 34
    • 33845402281 scopus 로고    scopus 로고
    • Biogeography and landscape-scale diversity of the dominant Crenarchaeota of soil
    • Oline DK, Schmidt SK & Grant MC (2006) Biogeography and landscape-scale diversity of the dominant Crenarchaeota of soil. Microb Ecol 52: 480-490.
    • (2006) Microb Ecol , vol.52 , pp. 480-490
    • Oline, D.K.1    Schmidt, S.K.2    Grant, M.C.3
  • 35
    • 77949718257 scopus 로고    scopus 로고
    • FastTree 2-approximately maximum-likelihood trees for large alignments
    • Price MN, Dehal PS & Arkin AP (2010) FastTree 2-approximately maximum-likelihood trees for large alignments. PLoS One 5: e9490.
    • (2010) PLoS One , vol.5
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 36
    • 84872572048 scopus 로고    scopus 로고
    • Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities
    • Rodrigues JL, Pellizari VH, Mueller R et al. (2013) Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities. P Natl Acad Sci USA 110: 988-993.
    • (2013) P Natl Acad Sci USA , vol.110 , pp. 988-993
    • Rodrigues, J.L.1    Pellizari, V.H.2    Mueller, R.3
  • 37
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss PD, Westcott SL, Ryabin T et al. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3
  • 38
    • 84866134338 scopus 로고    scopus 로고
    • Elevational patterns in archaeal diversity on Mt. Fuji
    • Singh D, Takahashi K & Adams JM (2012) Elevational patterns in archaeal diversity on Mt. Fuji. PLoS One 7: e44494.
    • (2012) PLoS One , vol.7
    • Singh, D.1    Takahashi, K.2    Adams, J.M.3
  • 39
    • 84872250001 scopus 로고    scopus 로고
    • Physiology and diversity of ammonia-oxidizing archaea
    • Stahl DA & de la Torre JR (2012) Physiology and diversity of ammonia-oxidizing archaea. Annu Rev Microbiol 66: 83-101.
    • (2012) Annu Rev Microbiol , vol.66 , pp. 83-101
    • Stahl, D.A.1    de la Torre, J.R.2
  • 40
    • 77953323744 scopus 로고    scopus 로고
    • The influence of different land uses on the structure of archaeal communities in Amazonian anthrosols based on 16S rRNA and amoA genes
    • Taketani RG & Tsai SM (2010) The influence of different land uses on the structure of archaeal communities in Amazonian anthrosols based on 16S rRNA and amoA genes. Microb Ecol 59: 734-743.
    • (2010) Microb Ecol , vol.59 , pp. 734-743
    • Taketani, R.G.1    Tsai, S.M.2
  • 41
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M & Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 42
    • 28644435323 scopus 로고    scopus 로고
    • Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic Crenarchaeota in nitrogen cycling
    • Treusch AH, Leininger S, Kletzin A, Schuster SC, Klenk HP & Schleper C (2005) Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic Crenarchaeota in nitrogen cycling. Environ Microbiol 7: 1985-1995.
    • (2005) Environ Microbiol , vol.7 , pp. 1985-1995
    • Treusch, A.H.1    Leininger, S.2    Kletzin, A.3    Schuster, S.C.4    Klenk, H.P.5    Schleper, C.6
  • 43
    • 84864334735 scopus 로고    scopus 로고
    • Tropical soil bacterial communities in Malaysia: pH dominates in the equatorial tropics too
    • Tripathi BM, Kim M, Singh D et al. (2012) Tropical soil bacterial communities in Malaysia: pH dominates in the equatorial tropics too. Microb Ecol 64: 474-484.
    • (2012) Microb Ecol , vol.64 , pp. 474-484
    • Tripathi, B.M.1    Kim, M.2    Singh, D.3
  • 44
    • 0025300402 scopus 로고
    • Towards a natural system of organisms - proposal for the domains archaea, bacteria, and eucarya
    • Woese CR, Kandler O & Wheelis ML (1990) Towards a natural system of organisms - proposal for the domains archaea, bacteria, and eucarya. P Natl Acad Sci USA 87: 4576-4579.
    • (1990) P Natl Acad Sci USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 45
    • 84857066705 scopus 로고    scopus 로고
    • Phylogenetic diversities and community structure of members of the extremely halophilic archaea (order Halobacteriales) in multiple saline sediment habitats
    • Youssef NH, Ashlock-Savage KN & Elshahed MS (2012) Phylogenetic diversities and community structure of members of the extremely halophilic archaea (order Halobacteriales) in multiple saline sediment habitats. Appl Environ Microbiol 78: 1332-1344.
    • (2012) Appl Environ Microbiol , vol.78 , pp. 1332-1344
    • Youssef, N.H.1    Ashlock-Savage, K.N.2    Elshahed, M.S.3
  • 46
    • 70349849845 scopus 로고    scopus 로고
    • Altitude ammonia-oxidizing bacteria and archaea in soils of Mount Everest
    • Zhang LM, Wang M, Prosser JI, Zheng YM & He JZ (2009) Altitude ammonia-oxidizing bacteria and archaea in soils of Mount Everest. FEMS Microbiol Ecol 70: 208-217.
    • (2009) FEMS Microbiol Ecol , vol.70 , pp. 208-217
    • Zhang, L.M.1    Wang, M.2    Prosser, J.I.3    Zheng, Y.M.4    He, J.Z.5


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