-
2
-
-
80052543729
-
Avian cathelicidins: Paradigms for the development of anti-infectives
-
21530107
-
van Dijk A, Molhoek EM, Bikker FJ, Yu PL, Veldhuizen EJA, Haagsman HP. Avian cathelicidins: paradigms for the development of anti-infectives. Vet Microbiol. 2011;153:27-36.
-
(2011)
Vet Microbiol
, vol.153
, pp. 27-36
-
-
Van Dijk, A.1
Molhoek, E.M.2
Bikker, F.J.3
Yu, P.L.4
Veldhuizen, E.J.A.5
Haagsman, H.P.6
-
3
-
-
84863307079
-
β-defensins: Multifunctional modulators of infection, inflammation and more?
-
1:CAS:528:DC%2BC38XpsFajtb8%3D 22441423
-
Semple F, Dorin JR. β-defensins: multifunctional modulators of infection, inflammation and more? Journal of Innate Immunity. 2012;4:337-48.
-
(2012)
Journal of Innate Immunity
, vol.4
, pp. 337-348
-
-
Semple, F.1
Dorin, J.R.2
-
4
-
-
0033214579
-
Evolutionary diversification of the mammalian defensins
-
1:CAS:528:DyaK1MXmslCmsb4%3D 11213266
-
Hughes AL. Evolutionary diversification of the mammalian defensins. CMLS, Cell Mol Life Sci. 1999;56:94-103.
-
(1999)
CMLS, Cell Mol Life Sci
, vol.56
, pp. 94-103
-
-
Hughes, A.L.1
-
5
-
-
33646003552
-
B-defensin evolution: Selection complexity and clues for residues of functional importance
-
1:CAS:528:DC%2BD28Xis1ers7w%3D 16545088
-
Semple CAM, Taylor K, Eastwood H, Barran PE, Dorin JR. b-defensin evolution: selection complexity and clues for residues of functional importance. Biochem Soc Trans. 2006;34:257-62.
-
(2006)
Biochem Soc Trans
, vol.34
, pp. 257-262
-
-
Semple, C.A.M.1
Taylor, K.2
Eastwood, H.3
Barran, P.E.4
Dorin, J.R.5
-
6
-
-
84917708482
-
Whole-genome analyses resolve early branches in the tree of life of modern birds
-
4405904 1:CAS:528:DC%2BC2cXitVCgs7%2FK 25504713
-
Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, et al. Whole-genome analyses resolve early branches in the tree of life of modern birds. Science. 2014;346:1320-31.
-
(2014)
Science
, vol.346
, pp. 1320-1331
-
-
Jarvis, E.D.1
Mirarab, S.2
Aberer, A.J.3
Li, B.4
Houde, P.5
Li, C.6
-
7
-
-
34249780856
-
Modification of chicken avian β-defensin-8 at positively selected amino acid sites enhances specific antimicrobial activity
-
1:CAS:528:DC%2BD2sXlvFakt7k%3D 17483936
-
Higgs R, Lynn D, Cahalane S, Alaña I, Hewage C, James T, et al. Modification of chicken avian β-defensin-8 at positively selected amino acid sites enhances specific antimicrobial activity. Immunogenetics. 2007;59:573-80.
-
(2007)
Immunogenetics
, vol.59
, pp. 573-580
-
-
Higgs, R.1
Lynn, D.2
Cahalane, S.3
Alaña, I.4
Hewage, C.5
James, T.6
-
8
-
-
84868093334
-
Induction of the human cathelicidin LL-37 as a novel treatment against bacterial infections
-
22701042
-
van der Does AM, Bergman P, Agerberth B, Lindbom L. Induction of the human cathelicidin LL-37 as a novel treatment against bacterial infections. J Leukoc Biol. 2012;92:735-42.
-
(2012)
J Leukoc Biol
, vol.92
, pp. 735-742
-
-
Van Der Does, A.M.1
Bergman, P.2
Agerberth, B.3
Lindbom, L.4
-
9
-
-
77950543567
-
Evolution of a cluster of innate immune genes (beta-defensins) along the ancestral lines of chicken and zebra finch
-
Hellgren O, Ekblom R. Evolution of a cluster of innate immune genes (beta-defensins) along the ancestral lines of chicken and zebra finch. Immunome Research. 2010;6:1745-7580.
-
(2010)
Immunome Research
, vol.6
, pp. 1745-7580
-
-
Hellgren, O.1
Ekblom, R.2
-
10
-
-
9144261231
-
A genome-wide screen identifies a single beta-defensin gene cluster in the chicken: Implications for the origin and evolution of mammalian defensins
-
515299 15310403
-
Xiao Y, Hughes A, Ando J, Matsuda Y, Cheng J-F, Skinner-Noble D, et al. A genome-wide screen identifies a single beta-defensin gene cluster in the chicken: implications for the origin and evolution of mammalian defensins. BMC Genomics. 2004;5:56.
-
(2004)
BMC Genomics
, vol.5
, pp. 56
-
-
Xiao, Y.1
Hughes, A.2
Ando, J.3
Matsuda, Y.4
Cheng, J.-F.5
Skinner-Noble, D.6
-
11
-
-
84879696615
-
The duck genome and transcriptome provide insight into an avian influenza virus reservoir species
-
4003391 1:CAS:528:DC%2BC3sXptVahtLg%3D 23749191
-
Huang Y, Li Y, Burt DW, Chen H, Zhang Y, Qian W, et al. The duck genome and transcriptome provide insight into an avian influenza virus reservoir species. Nat Genet. 2013;45:776-83.
-
(2013)
Nat Genet
, vol.45
, pp. 776-783
-
-
Huang, Y.1
Li, Y.2
Burt, D.W.3
Chen, H.4
Zhang, Y.5
Qian, W.6
-
12
-
-
34247597889
-
Avian beta-defensin nomenclature: A community proposed update
-
1:CAS:528:DC%2BD2sXkvFGgt7g%3D 17467809
-
Lynn DJ, Higgs R, Lloyd AT, O'Farrelly C, Hervé-Grépinet V, Nys Y, et al. Avian beta-defensin nomenclature: a community proposed update. Immunol Lett. 2007;110:86-9.
-
(2007)
Immunol Lett
, vol.110
, pp. 86-89
-
-
Lynn, D.J.1
Higgs, R.2
Lloyd, A.T.3
O'Farrelly, C.4
Hervé-Grépinet, V.5
Nys, Y.6
-
13
-
-
84923260977
-
The first report of a pelecaniformes defensin cluster: Characterization of b-defensin genes in the crested ibis based on BAC libraries
-
Lan H, Chen H, Chen L-C, Wang B-B, Sun L, Ma M-Y, et al. The first report of a pelecaniformes defensin cluster: characterization of b-defensin genes in the crested ibis based on BAC libraries. Scientific Reports. 2014;4.
-
(2014)
Scientific Reports
, vol.4
-
-
Lan, H.1
Chen, H.2
Chen, L.-C.3
Wang, B.-B.4
Sun, L.5
Ma, M.-Y.6
-
15
-
-
84896343984
-
Avian antimicrobial host defense peptides: From biology to therapeutic applications
-
3978490 1:CAS:528:DC%2BC2cXhtlWgs7zI 24583933
-
Zhang G, Sunkara L. Avian antimicrobial host defense peptides: from biology to therapeutic applications. Pharmaceuticals. 2014;7:220-47.
-
(2014)
Pharmaceuticals
, vol.7
, pp. 220-247
-
-
Zhang, G.1
Sunkara, L.2
-
16
-
-
55849153117
-
Expression of antimicrobial peptides in cecal tonsils of chickens treated with probiotics and infected with salmonella enterica serovar typhimurium
-
2583514 1:CAS:528:DC%2BD1cXhsVart7jF 18827189
-
Akbari MR, Haghighi HR, Chambers JR, Brisbin J, Read LR, Sharif S. Expression of antimicrobial peptides in cecal tonsils of chickens treated with probiotics and infected with salmonella enterica serovar typhimurium. Clin Vaccine Immunol. 2008;15:1689-93.
-
(2008)
Clin Vaccine Immunol
, vol.15
, pp. 1689-1693
-
-
Akbari, M.R.1
Haghighi, H.R.2
Chambers, J.R.3
Brisbin, J.4
Read, L.R.5
Sharif, S.6
-
17
-
-
79959397353
-
Immune response of chicken gut to natural colonization by gut microflora and to salmonella enterica serovar enteritidis infection
-
3191970 1:CAS:528:DC%2BC3MXot1Kju7w%3D 21555397
-
Crhanova M, Hradecka H, Faldynova M, Matulova M, Havlickova H, Sisak F, et al. Immune response of chicken gut to natural colonization by gut microflora and to salmonella enterica serovar enteritidis infection. Infect Immun. 2011;79:2755-63.
-
(2011)
Infect Immun
, vol.79
, pp. 2755-2763
-
-
Crhanova, M.1
Hradecka, H.2
Faldynova, M.3
Matulova, M.4
Havlickova, H.5
Sisak, F.6
-
18
-
-
67349178319
-
Differential modulation of β-defensin gene expression by Salmonella Enteritidis in intestinal epithelial cells from resistant and susceptible chicken inbred lines
-
1:CAS:528:DC%2BD1MXnsV2qu7k%3D 19539093
-
Derache C, Esnault E, Bonsergent C, Le Vern Y, Quéré P, Lalmanach A-C. Differential modulation of β-defensin gene expression by Salmonella Enteritidis in intestinal epithelial cells from resistant and susceptible chicken inbred lines. Dev Comp Immunol. 2009;33:959-66.
-
(2009)
Dev Comp Immunol
, vol.33
, pp. 959-966
-
-
Derache, C.1
Esnault, E.2
Bonsergent, C.3
Le Vern, Y.4
Quéré, P.5
Lalmanach, A.-C.6
-
19
-
-
84859711275
-
Differential gene expression profiles of β-defensins in the crop, intestine, and spleen using a necrotic enteritis model in 2 commercial broiler chicken lines
-
1:CAS:528:DC%2BC38XntFOjt70%3D 22499864
-
Hong YH, Song W, Lee SH, Lillehoj HS. Differential gene expression profiles of β-defensins in the crop, intestine, and spleen using a necrotic enteritis model in 2 commercial broiler chicken lines. Poult Sci. 2012;91:1081-8.
-
(2012)
Poult Sci
, vol.91
, pp. 1081-1088
-
-
Hong, Y.H.1
Song, W.2
Lee, S.H.3
Lillehoj, H.S.4
-
20
-
-
33947152401
-
The chicken host peptides, gallinacins 4, 7, and 9 have antimicrobial activity against Salmonella serovars
-
1:CAS:528:DC%2BD2sXjt1Snsbo%3D 17346671
-
Milona P, Townes CL, Bevan RM, Hall J. The chicken host peptides, gallinacins 4, 7, and 9 have antimicrobial activity against Salmonella serovars. Biochem Biophys Res Commun. 2007;356:169-74.
-
(2007)
Biochem Biophys Res Commun
, vol.356
, pp. 169-174
-
-
Milona, P.1
Townes, C.L.2
Bevan, R.M.3
Hall, J.4
-
21
-
-
33847670933
-
The β-defensin gallinacin-6 is expressed in the chicken digestive tract and has antimicrobial activity against food-borne pathogens
-
1803155 17194828
-
van Dijk A, Veldhuizen EJA, Kalkhove SIC, Tjeerdsma-van Bokhoven JLM, Romijn RA, Haagsman HP. The β-defensin gallinacin-6 is expressed in the chicken digestive tract and has antimicrobial activity against food-borne pathogens. Antimicrob Agents Chemother. 2007;51:912-22.
-
(2007)
Antimicrob Agents Chemother
, vol.51
, pp. 912-922
-
-
Van Dijk, A.1
Veldhuizen, E.J.A.2
Kalkhove, S.I.C.3
Tjeerdsma-van Bokhoven, J.L.M.4
Romijn, R.A.5
Haagsman, H.P.6
-
22
-
-
72949098325
-
Immunolocalization of avian β-defensins in the hen oviduct and their changes in the uterus during eggshell formation
-
1:CAS:528:DC%2BD1MXhsFKlur%2FE 19692499
-
Abdel Mageed AM, Isobe N, Yoshimura Y. Immunolocalization of avian β-defensins in the hen oviduct and their changes in the uterus during eggshell formation. Reproduction. 2009;138:971-8.
-
(2009)
Reproduction
, vol.138
, pp. 971-978
-
-
Abdel Mageed, A.M.1
Isobe, N.2
Yoshimura, Y.3
-
23
-
-
79251504642
-
Expression of toll-like receptors and avian β-defensins and their changes in response to bacterial components in chicken sperm
-
1:CAS:528:DC%2BC3MXis1egtLo%3D 21248340
-
Das SC, Isobe N, Yoshimura Y. Expression of toll-like receptors and avian β-defensins and their changes in response to bacterial components in chicken sperm. Poult Sci. 2011;90:417-25.
-
(2011)
Poult Sci
, vol.90
, pp. 417-425
-
-
Das, S.C.1
Isobe, N.2
Yoshimura, Y.3
-
24
-
-
77957365356
-
Purification and characterization of avian β-defensin 11, an antimicrobial peptide of the hen egg
-
2944589 20625158
-
Hervé-Grépinet V, Réhault-Godbert S, Labas V, Magallon T, Derache C, Lavergne M, et al. Purification and characterization of avian β-defensin 11, an antimicrobial peptide of the hen egg. Antimicrob Agents Chemother. 2010;54:4401-9.
-
(2010)
Antimicrob Agents Chemother
, vol.54
, pp. 4401-4409
-
-
Hervé-Grépinet, V.1
Réhault-Godbert, S.2
Labas, V.3
Magallon, T.4
Derache, C.5
Lavergne, M.6
-
25
-
-
83955164330
-
Transcriptional profiling of antimicrobial peptides avian β-defensins in the chicken ovary during sexual maturation and in response to Salmonella enteritidis infection
-
1:CAS:528:DC%2BC3MXhs1emtbrO 21071048
-
Michailidis G, Avdi M, Argiriou A. Transcriptional profiling of antimicrobial peptides avian β-defensins in the chicken ovary during sexual maturation and in response to Salmonella enteritidis infection. Res Vet Sci. 2012;92:60-5.
-
(2012)
Res Vet Sci
, vol.92
, pp. 60-65
-
-
Michailidis, G.1
Avdi, M.2
Argiriou, A.3
-
26
-
-
33744977034
-
Effects of age, egg-laying activity, and Salmonella-inoculation on the expressions of gallinacin mRNA in the vagina of the hen oviduct
-
1:CAS:528:DC%2BD28XmtlKisLY%3D 16394622
-
Yoshimura Y, Ohashi H, Subedi K, Nishibori M, Isobe N. Effects of age, egg-laying activity, and Salmonella-inoculation on the expressions of gallinacin mRNA in the vagina of the hen oviduct. J Reprod Dev. 2006;52:211-8.
-
(2006)
J Reprod Dev
, vol.52
, pp. 211-218
-
-
Yoshimura, Y.1
Ohashi, H.2
Subedi, K.3
Nishibori, M.4
Isobe, N.5
-
27
-
-
84923054605
-
Allelic variation at innate immune genes (avian β-defensins), within a natural population of great tits
-
Hellgren O. Allelic variation at innate immune genes (avian β-defensins), within a natural population of great tits. J Avian Biol. 2015;46:113-8.
-
(2015)
J Avian Biol
, vol.46
, pp. 113-118
-
-
Hellgren, O.1
-
28
-
-
79959254891
-
Locus-specific protocol for nine different innate immune genes (antimicrobial peptides: β-defensins) across passerine bird species reveals within-species coding variation and a case of trans-species polymorphisms
-
1:STN:280:DC%2BC3MngvFGktw%3D%3D 21676198
-
Hellgren O, Sheldon BC. Locus-specific protocol for nine different innate immune genes (antimicrobial peptides: β-defensins) across passerine bird species reveals within-species coding variation and a case of trans-species polymorphisms. Mol Ecol Resour. 2011;11:686-92.
-
(2011)
Mol Ecol Resour
, vol.11
, pp. 686-692
-
-
Hellgren, O.1
Sheldon, B.C.2
-
29
-
-
60149090707
-
Lipopolysaccharide bound structures of the active fragments of fowlicidin-1, a cathelicidin family of antimicrobial and antiendotoxic peptide from chicken, determined by transferred nuclear overhauser effect spectroscopy
-
1:CAS:528:DC%2BD1MXhvFCksLw%3D
-
Bhunia A, Mohanram H, Bhattacharjya S. Lipopolysaccharide bound structures of the active fragments of fowlicidin-1, a cathelicidin family of antimicrobial and antiendotoxic peptide from chicken, determined by transferred nuclear overhauser effect spectroscopy. Pept Sci. 2009;92:9-22.
-
(2009)
Pept Sci
, vol.92
, pp. 9-22
-
-
Bhunia, A.1
Mohanram, H.2
Bhattacharjya, S.3
-
30
-
-
35448966956
-
Chicken cathelicidin-B1, an antimicrobial guardian at the mucosal M cell gateway
-
1986613 1:CAS:528:DC%2BD2sXhtVyqu77I 17827276
-
Goitsuka R, Chen C-LH, Benyon L, Asano Y, Kitamura D, Cooper MD. Chicken cathelicidin-B1, an antimicrobial guardian at the mucosal M cell gateway. Proc Natl Acad Sci. 2007;104:15063-8.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 15063-15068
-
-
Goitsuka, R.1
Chen, C.-L.2
Benyon, L.3
Asano, Y.4
Kitamura, D.5
Cooper, M.D.6
-
31
-
-
67650508049
-
Identification of chicken cathelicidin-2 core elements involved in antibacterial and immunomodulatory activities
-
19524300
-
van Dijk A, Molhoek EM, Veldhuizen EJA, Bokhoven JLMT-V, Wagendorp E, Bikker F, et al. Identification of chicken cathelicidin-2 core elements involved in antibacterial and immunomodulatory activities. Mol Immunol. 2009;46:2465-73.
-
(2009)
Mol Immunol
, vol.46
, pp. 2465-2473
-
-
Van Dijk, A.1
Molhoek, E.M.2
Veldhuizen, E.J.A.3
Bokhoven, J.-V.4
Wagendorp, E.5
Bikker, F.6
-
32
-
-
22944458199
-
The role of cathelicidins in the innate host defenses of mammals
-
1:CAS:528:DC%2BD2MXotFarurY%3D 16053249
-
Zanetti M. The role of cathelicidins in the innate host defenses of mammals. Current Issues in Molecular Biology. 2005;7:179-96.
-
(2005)
Current Issues in Molecular Biology
, vol.7
, pp. 179-196
-
-
Zanetti, M.1
-
33
-
-
33846006520
-
Fowlicidin-3 is an α-helical cationic host defense peptide with potent antibacterial and lipopolysaccharide-neutralizing activities
-
1:CAS:528:DC%2BD2sXhtFClsrk%3D 17229147
-
Bommineni YR, Dai H, Gong Y-X, Soulages JL, Fernando SC, DeSilva U, et al. Fowlicidin-3 is an α-helical cationic host defense peptide with potent antibacterial and lipopolysaccharide-neutralizing activities. FEBS J. 2007;274:418-28.
-
(2007)
FEBS J
, vol.274
, pp. 418-428
-
-
Bommineni, Y.R.1
Dai, H.2
Gong, Y.-X.3
Soulages, J.L.4
Fernando, S.C.5
DeSilva, U.6
-
34
-
-
33745266360
-
Structure-activity relationships of fowlicidin-1, a cathelicidin antimicrobial peptide in chicken
-
1:CAS:528:DC%2BD28Xms1Wqt7s%3D 16817888
-
Xiao Y, Dai H, Bommineni YR, Soulages JL, Gong Y-X, Prakash O, et al. Structure-activity relationships of fowlicidin-1, a cathelicidin antimicrobial peptide in chicken. FEBS J. 2006;273:2581-93.
-
(2006)
FEBS J
, vol.273
, pp. 2581-2593
-
-
Xiao, Y.1
Dai, H.2
Bommineni, Y.R.3
Soulages, J.L.4
Gong, Y.-X.5
Prakash, O.6
-
35
-
-
77952546164
-
The central kink region of fowlicidin-2, an α-helical host defense peptide, is critically involved in bacterial killing and endotoxin neutralization
-
1:CAS:528:DC%2BD1MXktVGktLk%3D 20375584
-
Xiao Y, Herrera AI, Bommineni YR, Soulages JL, Prakash O, Zhang G. The central kink region of fowlicidin-2, an α-helical host defense peptide, is critically involved in bacterial killing and endotoxin neutralization. Journal of Innate Immunity. 2009;1:268-80.
-
(2009)
Journal of Innate Immunity
, vol.1
, pp. 268-280
-
-
Xiao, Y.1
Herrera, A.I.2
Bommineni, Y.R.3
Soulages, J.L.4
Prakash, O.5
Zhang, G.6
-
36
-
-
84876448817
-
Tissue expression and developmental regulation of chicken cathelicidin antimicrobial peptides
-
3436658 1:CAS:528:DC%2BC38XhsFOkurfK 22958518
-
Achanta M, Sunkara L, Dai G, Bommineni Y, Jiang W, Zhang G. Tissue expression and developmental regulation of chicken cathelicidin antimicrobial peptides. Journal of Animal Science and Biotechnology. 2012;3:15.
-
(2012)
Journal of Animal Science and Biotechnology
, vol.3
, pp. 15
-
-
Achanta, M.1
Sunkara, L.2
Dai, G.3
Bommineni, Y.4
Jiang, W.5
Zhang, G.6
-
37
-
-
33646367203
-
Identification and functional characterization of three chicken cathelicidins with potent antimicrobial activity
-
1:CAS:528:DC%2BD28XovVensw%3D%3D 16326712
-
Xiao Y, Cai Y, Bommineni YR, Fernando SC, Prakash O, Gilliland SE, et al. Identification and functional characterization of three chicken cathelicidins with potent antimicrobial activity. J Biol Chem. 2006;281:2858-67.
-
(2006)
J Biol Chem
, vol.281
, pp. 2858-2867
-
-
Xiao, Y.1
Cai, Y.2
Bommineni, Y.R.3
Fernando, S.C.4
Prakash, O.5
Gilliland, S.E.6
-
38
-
-
84869088692
-
The global diversity of birds in space and time
-
1:CAS:528:DC%2BC38Xhs1ajtrjJ 23123857
-
Jetz W, Thomas GH, Joy JB, Hartmann K, Mooers AO. The global diversity of birds in space and time. Nature. 2012;491:444-8.
-
(2012)
Nature
, vol.491
, pp. 444-448
-
-
Jetz, W.1
Thomas, G.H.2
Joy, J.B.3
Hartmann, K.4
Mooers, A.O.5
-
39
-
-
1542377379
-
Mini-review: Defense strategies and immunity-related genes
-
1:CAS:528:DC%2BD2cXnslygsg%3D%3D 14971025
-
Trowsdale J, Parham P. Mini-review: defense strategies and immunity-related genes. Eur J Immunol. 2004;34:7-17.
-
(2004)
Eur J Immunol
, vol.34
, pp. 7-17
-
-
Trowsdale, J.1
Parham, P.2
-
41
-
-
0036948138
-
Mode of action of membrane active antimicrobial peptides
-
1:CAS:528:DC%2BD3sXitlOrsA%3D%3D 12491537
-
Shai Y. Mode of action of membrane active antimicrobial peptides. Biopolymers. 2002;66:236-48.
-
(2002)
Biopolymers
, vol.66
, pp. 236-248
-
-
Shai, Y.1
-
42
-
-
22244480342
-
Structure-activity relation of human β-defensin 3: Influence of disulfide bonds and cysteine substitution on antimicrobial activity and cytotoxicity
-
16008365
-
Klüver E, Schulz-Maronde S, Scheid S, Meyer B, Forssmann W-G, Adermann K. Structure-activity relation of human β-defensin 3: influence of disulfide bonds and cysteine substitution on antimicrobial activity and cytotoxicity. Biochemistry. 2005;44:9804-16.
-
(2005)
Biochemistry
, vol.44
, pp. 9804-9816
-
-
Klüver, E.1
Schulz-Maronde, S.2
Scheid, S.3
Meyer, B.4
Forssmann, W.-G.5
Adermann, K.6
-
43
-
-
0026652575
-
Cationic defensins arise from charge-neutralized propeptides: A mechanism for avoiding leukocyte autocytotoxicity?
-
1:CAS:528:DyaK3sXitFWhsbY%3D 1613398
-
Michaelson D, Rayner J, Couto M, Ganz T. Cationic defensins arise from charge-neutralized propeptides: a mechanism for avoiding leukocyte autocytotoxicity? J Leukoc Biol. 1992;51:634-9.
-
(1992)
J Leukoc Biol
, vol.51
, pp. 634-639
-
-
Michaelson, D.1
Rayner, J.2
Couto, M.3
Ganz, T.4
-
44
-
-
0030990203
-
Coordinated amino acid changes in the evolution of mammalian defensins
-
1:CAS:528:DyaK2sXjslKjurs%3D 9169560
-
Hughes AL, Yeager M. Coordinated amino acid changes in the evolution of mammalian defensins. J Mol Evol. 1997;44:675-82.
-
(1997)
J Mol Evol
, vol.44
, pp. 675-682
-
-
Hughes, A.L.1
Yeager, M.2
-
45
-
-
84897049000
-
Episodic positive selection in the evolution of avian toll-like receptor innate immunity genes
-
e89632 3940441 24595315
-
Grueber CE, Wallis GP, Jamieson IG. Episodic positive selection in the evolution of avian toll-like receptor innate immunity genes. PLoS One. 2014;9, e89632.
-
(2014)
PLoS One
, vol.9
-
-
Grueber, C.E.1
Wallis, G.P.2
Jamieson, I.G.3
-
46
-
-
84929359240
-
Impact of spatial dispersion, evolution, and selection on Ebola Zaire Virus epidemic waves
-
4431419 1:CAS:528:DC%2BC2MXhtFyhsrjL 25973685
-
Azarian T, Lo Presti A, Giovanetti M, Cella E, Rife B, Lai A, et al. Impact of spatial dispersion, evolution, and selection on Ebola Zaire Virus epidemic waves. Scientific Reports. 2015;5:10170.
-
(2015)
Scientific Reports
, vol.5
, pp. 10170
-
-
Azarian, T.1
Lo Presti, A.2
Giovanetti, M.3
Cella, E.4
Rife, B.5
Lai, A.6
-
47
-
-
0141760047
-
Evolution of the beta defensin 2 gene in primates
-
1:CAS:528:DC%2BD3sXjvFals78%3D 12761560
-
Boniotto M, Tossi A, DelPero M, Sgubin S, Antcheva N, Santon D, et al. Evolution of the beta defensin 2 gene in primates. Genes and Immunity. 2003;4:251-7.
-
(2003)
Genes and Immunity
, vol.4
, pp. 251-257
-
-
Boniotto, M.1
Tossi, A.2
DelPero, M.3
Sgubin, S.4
Antcheva, N.5
Santon, D.6
-
48
-
-
0036193191
-
β-Defensin 1 gene variability among non-human primates
-
11862391
-
Del Pero M, Boniotto M, Zuccon D, Cervella P, Spanò A, Amoroso A, et al. β-Defensin 1 gene variability among non-human primates. Immunogenetics. 2002;53:907-13.
-
(2002)
Immunogenetics
, vol.53
, pp. 907-913
-
-
Del Pero, M.1
Boniotto, M.2
Zuccon, D.3
Cervella, P.4
Spanò, A.5
Amoroso, A.6
-
49
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
-
308517 1:CAS:528:DyaK2MXitlSgu74%3D 7984417
-
Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994;22:4673-80.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
50
-
-
0031743421
-
Profile hidden Markov models
-
1:CAS:528:DyaK1MXktlCmtQ%3D%3D 9918945
-
Eddy SR. Profile hidden Markov models. Bioinformatics. 1998;14:755-63.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
51
-
-
80055082271
-
Accelerated profile HMM searches
-
e1002195 3197634 1:CAS:528:DC%2BC3MXhsVCku7rL 22039361
-
Eddy SR. Accelerated profile HMM searches. PLoS Comput Biol. 2011;7, e1002195.
-
(2011)
PLoS Comput Biol
, vol.7
-
-
Eddy, S.R.1
-
52
-
-
56649123520
-
Artemis and ACT: Viewing, annotating and comparing sequences stored in a relational database
-
2606163 1:CAS:528:DC%2BD1cXhsVWmsrbE 18845581
-
Carver T, Berriman M, Tivey A, Patel C, Böhme U, Barrell BG, et al. Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. Bioinformatics. 2008;24:2672-6.
-
(2008)
Bioinformatics
, vol.24
, pp. 2672-2676
-
-
Carver, T.1
Berriman, M.2
Tivey, A.3
Patel, C.4
Böhme, U.5
Barrell, B.G.6
-
53
-
-
84941577786
-
-
Calculation of protein isoelectric point Accessed March 2015
-
Kozlowski LP. Calculation of protein isoelectric point. http://isoelectric.ovh.org/index.html. Accessed March 2015.
-
-
-
Kozlowski, L.P.1
-
55
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
3203626 1:CAS:528:DC%2BC3MXht1eiu73K 21546353
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011;28:2731-9.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
56
-
-
0027565033
-
Relative efficiencies of the maximum likelihood, maximum parsimony, and neighbor-joining methods for estimating protein phylogeny
-
8081543
-
Hasegawa M, Fujiwara M. Relative efficiencies of the maximum likelihood, maximum parsimony, and neighbor-joining methods for estimating protein phylogeny. Mol Phylogenet Evol. 1993;2:1-5.
-
(1993)
Mol Phylogenet Evol
, vol.2
, pp. 1-5
-
-
Hasegawa, M.1
Fujiwara, M.2
-
57
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 1985;39:783-91.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
58
-
-
77957233168
-
Datamonkey 2010: A suite of phylogenetic analysis tools for evolutionary biology
-
2944195 1:CAS:528:DC%2BC3cXht1Whtb7F 20671151
-
Delport W, Poon AFY, Frost SDW, Kosakovsky Pond SL. Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology. Bioinformatics. 2010;26:2455-7.
-
(2010)
Bioinformatics
, vol.26
, pp. 2455-2457
-
-
Delport, W.1
Poon, A.F.Y.2
Frost, S.D.W.3
Kosakovsky Pond, S.L.4
-
59
-
-
17744396121
-
Not so different after All: A comparison of methods for detecting amino acid sites under selection
-
15703242
-
Kosakovsky Pond SL, Frost SDW. Not So different after All: a comparison of methods for detecting amino acid sites under selection. Mol Biol Evol. 2005;22:1208-22.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1208-1222
-
-
Kosakovsky Pond, S.L.1
Frost, S.D.W.2
-
60
-
-
84876522258
-
FUBAR: A fast, unconstrained Bayesian approximation for inferring selection
-
3670733 1:CAS:528:DC%2BC3sXlvFWgsLk%3D 23420840
-
Murrell B, Moola S, Mabona A, Weighill T, Sheward D, Kosakovsky Pond SL, et al. FUBAR: a fast, unconstrained bayesian approximation for inferring selection. Mol Biol Evol. 2013;30:1196-205.
-
(2013)
Mol Biol Evol
, vol.30
, pp. 1196-1205
-
-
Murrell, B.1
Moola, S.2
Mabona, A.3
Weighill, T.4
Sheward, D.5
Kosakovsky Pond, S.L.6
-
61
-
-
84864605220
-
Detecting individual sites subject to episodic diversifying selection
-
e1002764 3395634 1:CAS:528:DC%2BC38XhtVOnsLnI 22807683
-
Murrell B, Wertheim JO, Moola S, Weighill T, Scheffler K, Kosakovsky Pond SL. Detecting individual sites subject to episodic diversifying selection. PLoS Genet. 2012;8, e1002764.
-
(2012)
PLoS Genet
, vol.8
-
-
Murrell, B.1
Wertheim, J.O.2
Moola, S.3
Weighill, T.4
Scheffler, K.5
Kosakovsky Pond, S.L.6
-
62
-
-
80155187383
-
A random effects branch-site model for detecting episodic diversifying selection
-
Kosakovsky Pond SL, Murrell B, Fourment M, Frost SDW, Delport W, Scheffler K. A random effects branch-site model for detecting episodic diversifying selection. Mol Biol Evol. 2011.
-
(2011)
Mol Biol Evol
-
-
Kosakovsky Pond, S.L.1
Murrell, B.2
Fourment, M.3
Sdw, F.4
Delport, W.5
Scheffler, K.6
-
63
-
-
36948998606
-
An evolutionary-network model reveals stratified interactions in the V3 loop of the HIV-1 envelope
-
e231 2082504 18039027
-
Poon AFY, Lewis FI, Pond SLK, Frost SDW. An evolutionary-network model reveals stratified interactions in the V3 loop of the HIV-1 envelope. PLoS Comput Biol. 2007;3, e231.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
Poon, A.F.Y.1
Lewis, F.I.2
Pond, S.L.K.3
Frost, S.D.W.4
-
65
-
-
0035031966
-
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
-
1:CAS:528:DC%2BD3MXjtFyktr4%3D 11319253
-
Whelan S, Goldman N. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol Biol Evol. 2001;18:691-9.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 691-699
-
-
Whelan, S.1
Goldman, N.2
-
66
-
-
0025008168
-
Sequence logos: A new way to display consensus
-
332411 1:CAS:528:DyaK3MXitVGmuw%3D%3D 2172928
-
Schneider TD, Stephens RM. Sequence logos: a new way to display consensus. Nucleic Acids Res. 1990;18:6097-100.
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 6097-6100
-
-
Schneider, T.D.1
Stephens, R.M.2
-
67
-
-
0033625531
-
TEXshade: Shading and labeling multiple sequence alignments using LATEX2e
-
1:CAS:528:DC%2BD3cXktVyitr4%3D 10842735
-
Beitz E. TEXshade: shading and labeling multiple sequence alignments using LATEX2e. Bioinformatics. 2000;16:135-9.
-
(2000)
Bioinformatics
, vol.16
, pp. 135-139
-
-
Beitz, E.1
|