-
1
-
-
84868521018
-
Plant abiotic stress signaling
-
COI: 1:CAS:528:DC%2BC3sXjsVWhurc%3D, PID: 2299045
-
Akpinar BA, Avsar B, Lucas SJ, Budak H (2012) Plant abiotic stress signaling. Plant Signal Behav 7:1450–5. doi:10.4161/psb.21894
-
(2012)
Plant Signal Behav
, vol.7
, pp. 1450-1455
-
-
Akpinar, B.A.1
Avsar, B.2
Lucas, S.J.3
Budak, H.4
-
2
-
-
84879311567
-
Genomics approaches for crop improvement against abiotic stress
-
Akpinar BA, Lucas SJ, Budak H (2013) Genomics approaches for crop improvement against abiotic stress. Sci World J. doi:10.1155/2013/361921
-
(2013)
Sci World J
-
-
Akpinar, B.A.1
Lucas, S.J.2
Budak, H.3
-
3
-
-
84875476368
-
miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data
-
COI: 1:CAS:528:DC%2BC3sXhtFyjtrs%3D, PID: 2322164
-
An J, Lai J, Lehman ML, Nelson CC (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res 41:727–37. doi:10.1093/nar/gks1187
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 727-737
-
-
An, J.1
Lai, J.2
Lehman, M.L.3
Nelson, C.C.4
-
4
-
-
84875630642
-
Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
-
COI: 1:CAS:528:DC%2BC3sXksFWjur4%3D, PID: 2326455
-
Bertolini E, Verelst W, Horner DS et al (2013) Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon. Mol Plant 6:423–443. doi:10.1093/mp/sss160
-
(2013)
Mol Plant
, vol.6
, pp. 423-443
-
-
Bertolini, E.1
Verelst, W.2
Horner, D.S.3
-
5
-
-
84899833057
-
A genome-wide perspective of miRNAome in response to high temperature, salinity and drought stresses in Brassica juncea (Czern) L
-
PID: 2467100
-
Bhardwaj AR, Joshi G, Pandey R et al (2014) A genome-wide perspective of miRNAome in response to high temperature, salinity and drought stresses in Brassica juncea (Czern) L. PLoS One 9, e92456. doi:10.1371/journal.pone.0092456
-
(2014)
PLoS One
, vol.9
-
-
Bhardwaj, A.R.1
Joshi, G.2
Pandey, R.3
-
7
-
-
84901452669
-
Selection of candidate reference genes for real-time PCR studies in lettuce under abiotic stresses
-
COI: 1:CAS:528:DC%2BC2cXjtlWisbk%3D, PID: 2457322
-
Borowski JM, Galli V, da Messias RS (2014) Selection of candidate reference genes for real-time PCR studies in lettuce under abiotic stresses. Planta 239:1187–200. doi:10.1007/s00425-014-2041-2
-
(2014)
Planta
, vol.239
, pp. 1187-1200
-
-
Borowski, J.M.1
Galli, V.2
da Messias, R.S.3
-
8
-
-
84855304145
-
High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
-
COI: 1:CAS:528:DC%2BC38XlslOqsw%3D%3D, PID: 2194083
-
Breakfield NW, Corcoran DL, Petricka JJ et al (2012) High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis. Genome Res 22(1):163–76. doi:10.1101/gr.123547.111
-
(2012)
Genome Res
, vol.22
, Issue.1
, pp. 163-176
-
-
Breakfield, N.W.1
Corcoran, D.L.2
Petricka, J.J.3
-
9
-
-
82355186184
-
Dehydration Stress-Responsive miRNA in Brachypodium distachyon: Evident by Genome-Wide Screening of microRNAs Expression
-
Budak H, Akpinar BA (2011) Dehydration Stress-Responsive miRNA in Brachypodium distachyon: Evident by Genome-Wide Screening of microRNAs Expression. OMICS 15(11):791–799. doi:10.1089/omi.2011.0073
-
(2011)
OMICS
, vol.15
, Issue.11
, pp. 791-799
-
-
Budak, H.1
Akpinar, B.A.2
-
10
-
-
84941259412
-
Plant miRNA: biogenesis, organization and origin. Funct Integr Genomics
-
Budak H, Akpinar BA (2015) Plant miRNA: biogenesis, organization and origin. Funct Integr Genomics. PMID: 26113396
-
(2015)
PMID
-
-
Budak, H.1
Akpinar, B.A.2
-
11
-
-
84942857965
-
Harnessing NGS and big data optimally: comparison of miRNA prediction from assembled versus non-assembled sequencing data—the case of the grass Aegilops tauschii complex genome. OMICS
-
Budak H, Kantar M (2015) Harnessing NGS and big data optimally: comparison of miRNA prediction from assembled versus non-assembled sequencing data—the case of the grass Aegilops tauschii complex genome. OMICS. PMID: 26061358
-
(2015)
PMID
-
-
Budak, H.1
Kantar, M.2
-
12
-
-
84878656054
-
Drought tolerance in modern and wild wheat
-
Budak H, Kantar M, Kurtoglu KY (2013a) Drought tolerance in modern and wild wheat. Sci World J 2013:548246. doi:10.1155/2013/548246
-
(2013)
Sci World J
, vol.2013
, pp. 548246
-
-
Budak, H.1
Kantar, M.2
Kurtoglu, K.Y.3
-
13
-
-
84883242329
-
Proteome changes in wild and modern wheat leaves upon drought stress by two-dimensional electrophoresis and nanoLC-ESI-MS/MS
-
COI: 1:CAS:528:DC%2BC3sXhtlCnur7F, PID: 2344368
-
Budak H, Akpinar BA, Unver T, Turktas M (2013b) Proteome changes in wild and modern wheat leaves upon drought stress by two-dimensional electrophoresis and nanoLC-ESI-MS/MS. Plant Mol Biol 83:89–103. doi:10.1007/s11103-013-0024-5
-
(2013)
Plant Mol Biol
, vol.83
, pp. 89-103
-
-
Budak, H.1
Akpinar, B.A.2
Unver, T.3
Turktas, M.4
-
14
-
-
84941622744
-
History and current status of wheat miRNAs using next-generation sequencing and their roles in development and stress
-
PID: 2496299
-
Budak H, Khan Z, Kantar M (2014) History and current status of wheat miRNAs using next-generation sequencing and their roles in development and stress. Brief Funct Genomics. doi:10.1093/bfgp/elu021
-
(2014)
Brief Funct Genomics
-
-
Budak, H.1
Khan, Z.2
Kantar, M.3
-
15
-
-
84924767753
-
Stress responsive miRNAs and isomiRs in cereals
-
COI: 1:CAS:528:DC%2BC2MXjsFGgurw%3D, PID: 2590056
-
Budak H, Kantar M, Bulut R (2015a) Stress responsive miRNAs and isomiRs in cereals. Plant Sci 235:1–13. doi:10.1016/j.plantsci.2015.02.008
-
(2015)
Plant Sci
, vol.235
, pp. 1-13
-
-
Budak, H.1
Kantar, M.2
Bulut, R.3
-
16
-
-
84959515860
-
MicroRNA nomenclature and the need for a revised naming prescription
-
Budak H, Kantar M, Bulut R, Alptekin B (2015b) MicroRNA nomenclature and the need for a revised naming prescription. Brief Funct Genomics. doi:10.1093/bfgp/elv026
-
(2015)
Brief Funct Genomics
-
-
Budak, H.1
Kantar, M.2
Bulut, R.3
Alptekin, B.4
-
17
-
-
84861014492
-
Effects of aluminum oxide nanoparticles on the growth, development, and microRNA expression of tobacco (Nicotiana tabacum)
-
COI: 1:CAS:528:DC%2BC38XnslOqsbY%3D, PID: 2260622
-
Burklew CE, Ashlock J, Winfrey WB, Zhang B (2012) Effects of aluminum oxide nanoparticles on the growth, development, and microRNA expression of tobacco (Nicotiana tabacum). PLoS One 7, e34783. doi:10.1371/journal.pone.0034783
-
(2012)
PLoS One
, vol.7
-
-
Burklew, C.E.1
Ashlock, J.2
Winfrey, W.B.3
Zhang, B.4
-
18
-
-
84876592102
-
Discovery of MicroRNA169 gene copies in genomes of flowering plants through positional information
-
PID: 2334804
-
Calviño M, Messing J (2013) Discovery of MicroRNA169 gene copies in genomes of flowering plants through positional information. Genome Biol Evol 5:402–17. doi:10.1093/gbe/evt015
-
(2013)
Genome Biol Evol
, vol.5
, pp. 402-417
-
-
Calviño, M.1
Messing, J.2
-
19
-
-
74049108922
-
BLAST+: architecture and applications
-
PID: 2000350
-
Camacho C, Coulouris G, Avagyan V et al (2009) BLAST+: architecture and applications. BMC Bioinformatics 10:421. doi:10.1186/1471-2105-10-421
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 421
-
-
Camacho, C.1
Coulouris, G.2
Avagyan, V.3
-
20
-
-
79955728996
-
In Medicago truncatula, water deficit modulates the transcript accumulation of components of small RNA pathways
-
PID: 2156926
-
Capitão C, Paiva JAP, Santos DM, Fevereiro P (2011) In Medicago truncatula, water deficit modulates the transcript accumulation of components of small RNA pathways. BMC Plant Biol 11:79. doi:10.1186/1471-2229-11-79
-
(2011)
BMC Plant Biol
, vol.11
, pp. 79
-
-
Capitão, C.1
Paiva, J.A.P.2
Santos, D.M.3
Fevereiro, P.4
-
21
-
-
43949138227
-
Blast2GO: a comprehensive suite for functional analysis in plant genomics
-
PID: 1848357
-
Conesa A, Götz S (2008) Blast2GO: a comprehensive suite for functional analysis in plant genomics. Int J Plant Genomics 2008:619832. doi:10.1155/2008/619832
-
(2008)
Int J Plant Genomics
, vol.2008
, pp. 619832
-
-
Conesa, A.1
Götz, S.2
-
22
-
-
79959967431
-
psRNATarget: a plant small RNA target analysis server
-
COI: 1:CAS:528:DC%2BC3MXosVOnt7w%3D, PID: 2162295
-
Dai X, Zhao PX (2011) psRNATarget: a plant small RNA target analysis server. Nucleic Acids Res 39:W155–9. doi:10.1093/nar/gkr319
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 155-159
-
-
Dai, X.1
Zhao, P.X.2
-
23
-
-
45849131260
-
Data mining for miRNAs and their targets in the Triticeae
-
COI: 1:CAS:528:DC%2BD1cXmsVOjurk%3D, PID: 1852112
-
Dryanova A, Zakharov A, Gulick PJ (2008) Data mining for miRNAs and their targets in the Triticeae. Genome 51:433–43. doi:10.1139/G08-025
-
(2008)
Genome
, vol.51
, pp. 433-443
-
-
Dryanova, A.1
Zakharov, A.2
Gulick, P.J.3
-
24
-
-
58849159299
-
Sequencing over 13 000 expressed sequence tags from six subtractive cDNA libraries of wild and modern wheats following slow drought stress
-
COI: 1:CAS:528:DC%2BD1MXjsVKls7c%3D, PID: 1905435
-
Ergen NZ, Budak H (2009) Sequencing over 13 000 expressed sequence tags from six subtractive cDNA libraries of wild and modern wheats following slow drought stress. Plant Cell Environ 32:220–36. doi:10.1111/j.1365-3040.2008.01915.x
-
(2009)
Plant Cell Environ
, vol.32
, pp. 220-236
-
-
Ergen, N.Z.1
Budak, H.2
-
25
-
-
67649933648
-
Transcriptome pathways unique to dehydration tolerant relatives of modern wheat
-
COI: 1:CAS:528:DC%2BD1MXns1Chu7g%3D, PID: 1933036
-
Ergen NZ, Thimmapuram J, Bohnert HJ, Budak H (2009) Transcriptome pathways unique to dehydration tolerant relatives of modern wheat. Funct Integr Genomics 9:377–96. doi:10.1007/s10142-009-0123-1
-
(2009)
Funct Integr Genomics
, vol.9
, pp. 377-396
-
-
Ergen, N.Z.1
Thimmapuram, J.2
Bohnert, H.J.3
Budak, H.4
-
26
-
-
84898939935
-
Conserved miR164-targeted NAC genes negatively regulate drought resistance in rice
-
COI: 1:CAS:528:DC%2BC2cXmsVGkurY%3D, PID: 2460473
-
Fang Y, Xie K, Xiong L (2014) Conserved miR164-targeted NAC genes negatively regulate drought resistance in rice. J Exp Bot 65:2119–35. doi:10.1093/jxb/eru072
-
(2014)
J Exp Bot
, vol.65
, pp. 2119-2135
-
-
Fang, Y.1
Xie, K.2
Xiong, L.3
-
27
-
-
84867422730
-
microRNAs associated with drought response in the bioenergy crop sugarcane (Saccharum spp.)
-
COI: 1:CAS:528:DC%2BC38Xhs1Sitr%2FL, PID: 2307161
-
Ferreira TH, Gentile A, Vilela RD et al (2012) microRNAs associated with drought response in the bioenergy crop sugarcane (Saccharum spp.). PLoS One 7, e46703. doi:10.1371/journal.pone.0046703
-
(2012)
PLoS One
, vol.7
-
-
Ferreira, T.H.1
Gentile, A.2
Vilela, R.D.3
-
28
-
-
41849084855
-
Discovering microRNAs from deep sequencing data using miRDeep
-
PID: 1839202
-
Friedländer MR, Chen W, Adamidi C et al (2008) Discovering microRNAs from deep sequencing data using miRDeep. Nat Biotechnol 26:407–15. doi:10.1038/nbt1394
-
(2008)
Nat Biotechnol
, vol.26
, pp. 407-415
-
-
Friedländer, M.R.1
Chen, W.2
Adamidi, C.3
-
29
-
-
84893970501
-
Analysis of biochemical variations and microRNA expression in wild (Ipomoea campanulata) and cultivated (Jacquemontia pentantha) species exposed to in vivo water stress
-
COI: 1:CAS:528:DC%2BC2cXivFemsbk%3D, PID: 2455483
-
Ghorecha V, Patel K, Ingle S et al (2014) Analysis of biochemical variations and microRNA expression in wild (Ipomoea campanulata) and cultivated (Jacquemontia pentantha) species exposed to in vivo water stress. Physiol Mol Biol Plants 20:57–67. doi:10.1007/s12298-013-0207-1
-
(2014)
Physiol Mol Biol Plants
, vol.20
, pp. 57-67
-
-
Ghorecha, V.1
Patel, K.2
Ingle, S.3
-
30
-
-
79960264362
-
Full-length transcriptome assembly from RNA-Seq data without a reference genome
-
COI: 1:CAS:528:DC%2BC3MXmtV2hsbc%3D, PID: 2157244
-
Grabherr MG, Haas BJ, Yassour M et al (2011) Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol 29:644–52. doi:10.1038/nbt.1883
-
(2011)
Nat Biotechnol
, vol.29
, pp. 644-652
-
-
Grabherr, M.G.1
Haas, B.J.2
Yassour, M.3
-
31
-
-
84903379739
-
Differential regulation of microRNAs in response to osmotic, salt and cold stresses in wheat
-
COI: 1:CAS:528:DC%2BC2cXltFyhtLc%3D, PID: 2468292
-
Gupta OP, Meena NL, Sharma I, Sharma P (2014) Differential regulation of microRNAs in response to osmotic, salt and cold stresses in wheat. Mol Biol Rep 41:4623–9. doi:10.1007/s11033-014-3333-0
-
(2014)
Mol Biol Rep
, vol.41
, pp. 4623-4629
-
-
Gupta, O.P.1
Meena, N.L.2
Sharma, I.3
Sharma, P.4
-
32
-
-
84876799230
-
MicroRNAs and their cross-talks in plant development
-
COI: 1:CAS:528:DC%2BC3sXhvFamsrbO, PID: 2361839
-
Jin D, Wang Y, Zhao Y, Chen M (2013) MicroRNAs and their cross-talks in plant development. J Genet Genomics 40:161–70. doi:10.1016/j.jgg.2013.02.003
-
(2013)
J Genet Genomics
, vol.40
, pp. 161-170
-
-
Jin, D.1
Wang, Y.2
Zhao, Y.3
Chen, M.4
-
33
-
-
60849085436
-
HHMMiR: efficient de novo prediction of microRNAs using hierarchical hidden Markov models
-
PID: 1920813
-
Kadri S, Hinman V, Benos PV (2009) HHMMiR: efficient de novo prediction of microRNAs using hierarchical hidden Markov models. BMC Bioinformatics 10(Suppl 1):S35. doi:10.1186/1471-2105-10-S1-S35
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 35
-
-
Kadri, S.1
Hinman, V.2
Benos, P.V.3
-
34
-
-
79955151502
-
Plant responses to drought and salinity stress—developments in a post-genomic era
-
COI: 1:CAS:528:DC%2BC3MXps1SitbY%3
-
Kantar M, Lucas SJ, Budak H (2011a) Plant responses to drought and salinity stress—developments in a post-genomic era. Adv Bot Res 57:445–493. doi:10.1016/B978-0-12-387692-8.00013-8
-
(2011)
Adv Bot Res
, vol.57
, pp. 445-493
-
-
Kantar, M.1
Lucas, S.J.2
Budak, H.3
-
35
-
-
79951941475
-
miRNA expression patterns of Triticum dicoccoides in response to shock drought stress
-
COI: 1:CAS:528:DC%2BC3MXitlaksLc%3D, PID: 2106938
-
Kantar M, Lucas SJ, Budak H (2011b) miRNA expression patterns of Triticum dicoccoides in response to shock drought stress. Planta 233:471–84. doi:10.1007/s00425-010-1309-4
-
(2011)
Planta
, vol.233
, pp. 471-484
-
-
Kantar, M.1
Lucas, S.J.2
Budak, H.3
-
36
-
-
84870297952
-
Subgenomic analysis of microRNAs in polyploid wheat
-
COI: 1:CAS:528:DC%2BC38Xht1OmtbfK, PID: 2259265
-
Kantar M, Akpınar BA, Valárik M et al (2012) Subgenomic analysis of microRNAs in polyploid wheat. Funct Integr Genomics 12:465–79. doi:10.1007/s10142-012-0285-0
-
(2012)
Funct Integr Genomics
, vol.12
, pp. 465-479
-
-
Kantar, M.1
Akpınar, B.A.2
Valárik, M.3
-
37
-
-
79958231735
-
Wheat hybridization and polyploidization results in deregulation of small RNAs
-
COI: 1:CAS:528:DC%2BC3MXhtVGqtb7E, PID: 2146757
-
Kenan-Eichler M, Leshkowitz D, Tal L et al (2011) Wheat hybridization and polyploidization results in deregulation of small RNAs. Genetics 188:263–72. doi:10.1534/genetics.111.128348
-
(2011)
Genetics
, vol.188
, pp. 263-272
-
-
Kenan-Eichler, M.1
Leshkowitz, D.2
Tal, L.3
-
38
-
-
78651293534
-
miRBase: integrating microRNA annotation and deep-sequencing data
-
COI: 1:CAS:528:DC%2BC3sXivF2murs%3D, PID: 2103725
-
Kozomara A, Griffiths-Jones S (2011) miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res 39:D152–7. doi:10.1093/nar/gkq1027
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 152-157
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
39
-
-
77955920218
-
Multilevel regulation and signalling processes associated with adaptation to terminal drought in wild emmer wheat
-
COI: 1:CAS:528:DC%2BC3cXlsVKgu7k%3D, PID: 2033353
-
Krugman T, Chagué V, Peleg Z et al (2010) Multilevel regulation and signalling processes associated with adaptation to terminal drought in wild emmer wheat. Funct Integr Genomics 10:167–86. doi:10.1007/s10142-010-0166-3
-
(2010)
Funct Integr Genomics
, vol.10
, pp. 167-186
-
-
Krugman, T.1
Chagué, V.2
Peleg, Z.3
-
40
-
-
84855683289
-
Alteration in expression of hormone-related genes in wild emmer wheat roots associated with drought adaptation mechanisms
-
COI: 1:CAS:528:DC%2BC3MXhsV2lsrjO, PID: 2165601
-
Krugman T, Peleg Z, Quansah L et al (2011) Alteration in expression of hormone-related genes in wild emmer wheat roots associated with drought adaptation mechanisms. Funct Integr Genomics 11:565–83. doi:10.1007/s10142-011-0231-6
-
(2011)
Funct Integr Genomics
, vol.11
, pp. 565-583
-
-
Krugman, T.1
Peleg, Z.2
Quansah, L.3
-
41
-
-
84880754873
-
Unique and conserved microRNAs in wheat chromosome 5D revealed by next-generation sequencing
-
COI: 1:CAS:528:DC%2BC3sXht1ersLnI, PID: 2393610
-
Kurtoglu KY, Kantar M, Lucas SJ, Budak H (2013) Unique and conserved microRNAs in wheat chromosome 5D revealed by next-generation sequencing. PLoS One 8, e69801. doi:10.1371/journal.pone.0069801
-
(2013)
PLoS One
, vol.8
-
-
Kurtoglu, K.Y.1
Kantar, M.2
Lucas, S.J.3
Budak, H.4
-
43
-
-
57749110646
-
The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance
-
COI: 1:CAS:528:DC%2BD1cXht1ClsbrM, PID: 1868254
-
Li W-X, Oono Y, Zhu J et al (2008) The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance. Plant Cell 20:2238–51. doi:10.1105/tpc.108.059444
-
(2008)
Plant Cell
, vol.20
, pp. 2238-2251
-
-
Li, W.-X.1
Oono, Y.2
Zhu, J.3
-
44
-
-
84903618373
-
MRNA and small RNA transcriptomes reveal insights into dynamic homoeolog regulation of allopolyploid heterosis in nascent hexaploid wheat
-
COI: 1:CAS:528:DC%2BC2cXhtFOhtrzI, PID: 2483897
-
Li A, Liu D, Wu J et al (2014) MRNA and small RNA transcriptomes reveal insights into dynamic homoeolog regulation of allopolyploid heterosis in nascent hexaploid wheat. Plant Cell 26:1878–1900. doi:10.1105/tpc.114.124388
-
(2014)
Plant Cell
, vol.26
, pp. 1878-1900
-
-
Li, A.1
Liu, D.2
Wu, J.3
-
45
-
-
67649921029
-
Dicer-like (DCL) proteins in plants
-
COI: 1:CAS:528:DC%2BD1MXns1Chu7s%3D, PID: 1922181
-
Liu Q, Feng Y, Zhu Z (2009) Dicer-like (DCL) proteins in plants. Funct Integr Genomics 9:277–86. doi:10.1007/s10142-009-0111-5
-
(2009)
Funct Integr Genomics
, vol.9
, pp. 277-286
-
-
Liu, Q.1
Feng, Y.2
Zhu, Z.3
-
46
-
-
0035984059
-
Endogenous and silencing-associated small RNAs in plants
-
COI: 1:CAS:528:DC%2BD38XlvV2rsbY%3D, PID: 1211937
-
Llave C, Kasschau KD, Rector MA, Carrington JC (2002) Endogenous and silencing-associated small RNAs in plants. Plant Cell 14:1605–1619. doi:10.1105/tpc.003210.ruses
-
(2002)
Plant Cell
, vol.14
, pp. 1605-1619
-
-
Llave, C.1
Kasschau, K.D.2
Rector, M.A.3
Carrington, J.C.4
-
47
-
-
84898490585
-
Family-wide survey of miR169s and NF-YAs and their expression profiles response to abiotic stress in maize roots
-
PID: 2463305
-
Luan M, Xu M, Lu Y et al (2014) Family-wide survey of miR169s and NF-YAs and their expression profiles response to abiotic stress in maize roots. PLoS One 9, e91369. doi:10.1371/journal.pone.0091369
-
(2014)
PLoS One
, vol.9
-
-
Luan, M.1
Xu, M.2
Lu, Y.3
-
48
-
-
84864020757
-
Sorting the wheat from the chaff: identifying miRNAs in genomic survey sequences of Triticum aestivum chromosome 1AL
-
COI: 1:CAS:528:DC%2BC38XhtVyrsrbP, PID: 2281584
-
Lucas SJ, Budak H (2012) Sorting the wheat from the chaff: identifying miRNAs in genomic survey sequences of Triticum aestivum chromosome 1AL. PLoS One 7, e40859. doi:10.1371/journal.pone.0040859
-
(2012)
PLoS One
, vol.7
-
-
Lucas, S.J.1
Budak, H.2
-
49
-
-
84934438960
-
UNAFold: software for nucleic acid folding and hybridization
-
COI: 1:CAS:528:DC%2BD1cXosFGgt78%3D, PID: 1871229
-
Markham NR, Zuker M (2008) UNAFold: software for nucleic acid folding and hybridization. Methods Mol Biol 453:3–31. doi:10.1007/978-1-60327-429-6_1
-
(2008)
Methods Mol Biol
, vol.453
, pp. 3-31
-
-
Markham, N.R.1
Zuker, M.2
-
50
-
-
77950990834
-
Drought and salt tolerances in wild relatives for wheat and barley improvement
-
COI: 1:CAS:528:DC%2BC3cXltV2hu7g%3D, PID: 2004006
-
Nevo E, Chen G (2010) Drought and salt tolerances in wild relatives for wheat and barley improvement. Plant Cell Environ 33:670–85. doi:10.1111/j.1365-3040.2009.02107.x
-
(2010)
Plant Cell Environ
, vol.33
, pp. 670-685
-
-
Nevo, E.1
Chen, G.2
-
51
-
-
84877593882
-
GmNFYA3, a target gene of miR169, is a positive regulator of plant tolerance to drought stress
-
COI: 1:CAS:528:DC%2BC3sXntVGjtbo%3D, PID: 2348329
-
Ni Z, Hu Z, Jiang Q, Zhang H (2013) GmNFYA3, a target gene of miR169, is a positive regulator of plant tolerance to drought stress. Plant Mol Biol 82:113–29. doi:10.1007/s11103-013-0040-5
-
(2013)
Plant Mol Biol
, vol.82
, pp. 113-129
-
-
Ni, Z.1
Hu, Z.2
Jiang, Q.3
Zhang, H.4
-
52
-
-
84879494252
-
Biogenesis, evolution, and functions of plant microRNAs
-
COI: 1:CAS:528:DC%2BC3sXpvVyisLg%3
-
Pashkovskiy PP, Ryazansky SS (2013) Biogenesis, evolution, and functions of plant microRNAs. Biochem Biokhimiia 78:627–37. doi:10.1134/S0006297913060084
-
(2013)
Biochem Biokhimiia
, vol.78
, pp. 627-637
-
-
Pashkovskiy, P.P.1
Ryazansky, S.S.2
-
53
-
-
66249138884
-
Genomic dissection of drought resistance in durum wheat × wild emmer wheat recombinant inbreed line population
-
COI: 1:CAS:528:DC%2BD1MXosl2jsLw%3D, PID: 1922078
-
Peleg Z, Fahima T, Krugman T et al (2009) Genomic dissection of drought resistance in durum wheat × wild emmer wheat recombinant inbreed line population. Plant Cell Environ 32:758–79. doi:10.1111/j.1365-3040.2009.01956.x
-
(2009)
Plant Cell Environ
, vol.32
, pp. 758-779
-
-
Peleg, Z.1
Fahima, T.2
Krugman, T.3
-
54
-
-
84873724255
-
ptr-MIR169 is a posttranscriptional repressor of PtrHAP2 during vegetative bud dormancy period of aspen (Populus tremuloides) trees
-
COI: 1:CAS:528:DC%2BC3sXhvFSht7w%3D, PID: 2332130
-
Potkar R, Recla J, Busov V (2013) ptr-MIR169 is a posttranscriptional repressor of PtrHAP2 during vegetative bud dormancy period of aspen (Populus tremuloides) trees. Biochem Biophys Res Commun 431:512–8. doi:10.1016/j.bbrc.2013.01.027
-
(2013)
Biochem Biophys Res Commun
, vol.431
, pp. 512-518
-
-
Potkar, R.1
Recla, J.2
Busov, V.3
-
55
-
-
84857198753
-
Deep sequencing of small RNAs in plants: applied bioinformatics
-
COI: 1:CAS:528:DC%2BC38Xisl2lsbg%3D, PID: 2218433
-
Studholme DJ (2012) Deep sequencing of small RNAs in plants: applied bioinformatics. Brief Funct Genomics 11:71–85. doi:10.1093/bfgp/elr039
-
(2012)
Brief Funct Genomics
, vol.11
, pp. 71-85
-
-
Studholme, D.J.1
-
56
-
-
84859073075
-
MicroRNA expression analysis in the cellulosic biofuel crop switchgrass (Panicum virgatum) under abiotic stress
-
COI: 1:CAS:528:DC%2BC38XlsVagtLY%3D, PID: 2247041
-
Sun G, Stewart CN, Xiao P, Zhang B (2012) MicroRNA expression analysis in the cellulosic biofuel crop switchgrass (Panicum virgatum) under abiotic stress. PLoS One 7, e32017. doi:10.1371/journal.pone.0032017
-
(2012)
PLoS One
, vol.7
-
-
Sun, G.1
Stewart, C.N.2
Xiao, P.3
Zhang, B.4
-
57
-
-
84908239006
-
Advances in identification and validation of plant microRNAs and their target genes
-
COI: 1:CAS:528:DC%2BC2cXhsFCjtL7K, PID: 2464162
-
Sun X, Zhang Y, Zhu X et al (2014) Advances in identification and validation of plant microRNAs and their target genes. Physiol Plant 152:203–18. doi:10.1111/ppl.12191
-
(2014)
Physiol Plant
, vol.152
, pp. 203-218
-
-
Sun, X.1
Zhang, Y.2
Zhu, X.3
-
58
-
-
42149157716
-
Identification of novel and candidate miRNAs in rice by high throughput sequencing
-
PID: 1831264
-
Sunkar R, Zhou X, Zheng Y et al (2008) Identification of novel and candidate miRNAs in rice by high throughput sequencing. BMC Plant Biol 8:25. doi:10.1186/1471-2229-8-25
-
(2008)
BMC Plant Biol
, vol.8
, pp. 25
-
-
Sunkar, R.1
Zhou, X.2
Zheng, Y.3
-
59
-
-
84862779295
-
Functions of microRNAs in plant stress responses
-
COI: 1:CAS:528:DC%2BC38XjtVyhsbc%3D, PID: 2236528
-
Sunkar R, Li Y-F, Jagadeeswaran G (2012) Functions of microRNAs in plant stress responses. Trends Plant Sci 17:196–203. doi:10.1016/j.tplants.2012.01.010
-
(2012)
Trends Plant Sci
, vol.17
, pp. 196-203
-
-
Sunkar, R.1
Li, Y.-F.2
Jagadeeswaran, G.3
-
60
-
-
79953093240
-
NOVOMIR: de novo prediction of MicroRNA-coding regions in a single plant-genome
-
PID: 2087182
-
Teune J-H, Steger G (2010) NOVOMIR: de novo prediction of MicroRNA-coding regions in a single plant-genome. J Nucleic Acids. doi:10.4061/2010/495904
-
(2010)
J Nucleic Acids
-
-
Teune, J.-H.1
Steger, G.2
-
61
-
-
76049126414
-
miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula
-
COI: 1:CAS:528:DC%2BC3cXlslWgtg%3D%3D, PID: 2001208
-
Trindade I, Capitão C, Dalmay T et al (2010) miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula. Planta 231:705–16. doi:10.1007/s00425-009-1078-0
-
(2010)
Planta
, vol.231
, pp. 705-716
-
-
Trindade, I.1
Capitão, C.2
Dalmay, T.3
-
62
-
-
69249215127
-
Conserved microRNAs and their targets in model grass species Brachypodium distachyon
-
COI: 1:CAS:528:DC%2BD1MXhtVait7%2FE, PID: 1958514
-
Unver T, Budak H (2009) Conserved microRNAs and their targets in model grass species Brachypodium distachyon. Planta 230:659–69. doi:10.1007/s00425-009-0974-7
-
(2009)
Planta
, vol.230
, pp. 659-669
-
-
Unver, T.1
Budak, H.2
-
63
-
-
84884206473
-
Response of miRNAs and their targets to salt and drought stresses in cotton (Gossypium hirsutum L.)
-
COI: 1:CAS:528:DC%2BC3sXhtl2qs73O, PID: 2394808
-
Wang M, Wang Q, Zhang B (2013) Response of miRNAs and their targets to salt and drought stresses in cotton (Gossypium hirsutum L.). Gene 530:26–32. doi:10.1016/j.gene.2013.08.009
-
(2013)
Gene
, vol.530
, pp. 26-32
-
-
Wang, M.1
Wang, Q.2
Zhang, B.3
-
64
-
-
79958033251
-
MiRPara: a SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences
-
COI: 1:CAS:528:DC%2BC3MXlt12hsLc%3D, PID: 2150462
-
Wu Y, Wei B, Liu H et al (2011) MiRPara: a SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences. BMC Bioinformatics 12:107. doi:10.1186/1471-2105-12-107
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 107
-
-
Wu, Y.1
Wei, B.2
Liu, H.3
-
65
-
-
55349103809
-
Wild emmer: genetic resources, gene mapping and potential for wheat improvement
-
Xie W, Nevo E (2008) Wild emmer: genetic resources, gene mapping and potential for wheat improvement. Euphytica 164:603–614. doi:10.1007/s10681-008-9703-8
-
(2008)
Euphytica
, vol.164
, pp. 603-614
-
-
Xie, W.1
Nevo, E.2
-
66
-
-
79955779744
-
PlantMiRNAPred: efficient classification of real and pseudo plant pre-miRNAs
-
COI: 1:CAS:528:DC%2BC3MXlvVyhtbs%3D, PID: 2144157
-
Xuan P, Guo M, Liu X et al (2011) PlantMiRNAPred: efficient classification of real and pseudo plant pre-miRNAs. Bioinformatics 27:1368–76. doi:10.1093/bioinformatics/btr153
-
(2011)
Bioinformatics
, vol.27
, pp. 1368-1376
-
-
Xuan, P.1
Guo, M.2
Liu, X.3
-
67
-
-
80052701585
-
miRDeep-P: a computational tool for analyzing the microRNA transcriptome in plants
-
COI: 1:CAS:528:DC%2BC3MXhtFKjtrjL, PID: 2177530
-
Yang X, Li L (2011) miRDeep-P: a computational tool for analyzing the microRNA transcriptome in plants. Bioinformatics 27:2614–5. doi:10.1093/bioinformatics/btr430
-
(2011)
Bioinformatics
, vol.27
, pp. 2614-2615
-
-
Yang, X.1
Li, L.2
-
68
-
-
27844495281
-
Identification and characterization of new plant microRNAs using EST analysis
-
PID: 1591672
-
Zhang BH, Pan XP, Wang QL et al (2005) Identification and characterization of new plant microRNAs using EST analysis. Cell Res 15:336–60. doi:10.1038/sj.cr.7290302
-
(2005)
Cell Res
, vol.15
, pp. 336-360
-
-
Zhang, B.H.1
Pan, X.P.2
Wang, Q.L.3
-
69
-
-
78651434625
-
Over-expression of microRNA169 confers enhanced drought tolerance to tomato
-
COI: 1:CAS:528:DC%2BC3MXmsl2ksw%3D%3D, PID: 2096022
-
Zhang X, Zou Z, Gong P et al (2011) Over-expression of microRNA169 confers enhanced drought tolerance to tomato. Biotechnol Lett 33:403–9. doi:10.1007/s10529-010-0436-0
-
(2011)
Biotechnol Lett
, vol.33
, pp. 403-409
-
-
Zhang, X.1
Zou, Z.2
Gong, P.3
-
70
-
-
84883214673
-
MicroRNA-mediated gene regulation: potential applications for plant genetic engineering
-
COI: 1:CAS:528:DC%2BC3sXhtlCgu7vJ, PID: 2377158
-
Zhou M, Luo H (2013) MicroRNA-mediated gene regulation: potential applications for plant genetic engineering. Plant Mol Biol 83:59–75. doi:10.1007/s11103-013-0089-1
-
(2013)
Plant Mol Biol
, vol.83
, pp. 59-75
-
-
Zhou, M.1
Luo, H.2
-
71
-
-
77958031243
-
Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa
-
COI: 1:CAS:528:DC%2BC3cXhtlShtLbP, PID: 2072948
-
Zhou L, Liu Y, Liu Z et al (2010) Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa. J Exp Bot 61:4157–68. doi:10.1093/jxb/erq237
-
(2010)
J Exp Bot
, vol.61
, pp. 4157-4168
-
-
Zhou, L.1
Liu, Y.2
Liu, Z.3
|