메뉴 건너뛰기




Volumn 6, Issue 2, 2013, Pages 423-443

Addressing the role of micrornas in reprogramming leaf growth during drought stress in brachypodium distachyon

Author keywords

Brachypodium; drought; leaf development; miRNAs

Indexed keywords

BRACHYPODIUM; BRACHYPODIUM DISTACHYON;

EID: 84875630642     PISSN: 16742052     EISSN: 17529867     Source Type: Journal    
DOI: 10.1093/mp/sss160     Document Type: Article
Times cited : (74)

References (111)
  • 1
    • 4243111895 scopus 로고    scopus 로고
    • Modulation of floral development by a gibberellin-regulated microRNA
    • Achard, P., Herr, A., Baulcombe, D.C., and Harberd, N.P. (2004). Modulation of floral development by a gibberellin-regulated microRNA. Development. 131, 3357-3365.
    • (2004) Development , vol.131 , pp. 3357-3365
    • Achard, P.1    Herr, A.2    Baulcombe, D.C.3    Harberd, N.P.4
  • 2
    • 73249121905 scopus 로고    scopus 로고
    • Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome
    • Addo-Quaye, C., Snyder, J.A., Park, Y.B., Li, Y.F., Sunkar, R., and Axtell, M.J. (2009). Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome. RNA. 15, 2112-2121.
    • (2009) RNA , vol.15 , pp. 2112-2121
    • Addo-Quaye, C.1    Snyder, J.A.2    Park, Y.B.3    Li, Y.F.4    Sunkar, R.5    Axtell, M.J.6
  • 5
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders, S., and Huber, W. (2010). Differential expression analysis for sequence count data. Genome Biology. 11, R106.
    • (2010) Genome Biology , vol.11
    • Anders, S.1    Huber, W.2
  • 6
    • 33745963372 scopus 로고    scopus 로고
    • Pho2, a phosphate overaccumulator, is caused by a non- sense mutation in a microRNA399 target gene
    • Aung, K., Lin, S.I., Wu, C.C., Huang, Y.T., Su, C.L., and Chiou, T.J. (2006). pho2, a phosphate overaccumulator, is caused by a non- sense mutation in a microRNA399 target gene. Plant Physiol. 141, 1000-1011.
    • (2006) Plant Physiol , vol.141 , pp. 1000-1011
    • Aung, K.1    Lin, S.I.2    Wu, C.C.3    Huang, Y.T.4    Su, C.L.5    Chiou, T.J.6
  • 7
    • 43449118038 scopus 로고    scopus 로고
    • Evolution of plant microR- NAs and their targets
    • Axtell, M.J., and Bowman, J.L. (2008). Evolution of plant microR- NAs and their targets. Trends Plant Sci. 13, 343-349.
    • (2008) Trends Plant Sci , vol.13 , pp. 343-349
    • Axtell, M.J.1    Bowman, J.L.2
  • 8
    • 79955524820 scopus 로고    scopus 로고
    • Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    • Baev, V., Milev, I., Naydenov, M., Apostolova, E., Minkov, G., Minkov, I., and Yahubyan, G. (2011). Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs. Genomics. 97, 282-293.
    • (2011) Genomics , vol.97 , pp. 282-293
    • Baev, V.1    Milev, I.2    Naydenov, M.3    Apostolova, E.4    Minkov, G.5    Minkov, I.6    Yahubyan, G.7
  • 9
    • 33745960196 scopus 로고    scopus 로고
    • PHO2, microRNA399, and PHR1 define a phosphate-signaling path- way in plants
    • Bari, R., Datt Pant, B., Stitt, M., and Scheible, W.R. (2006). PHO2, microRNA399, and PHR1 define a phosphate-signaling path- way in plants. Plant Physiol. 141, 988-999.
    • (2006) Plant Physiol , vol.141 , pp. 988-999
    • Bari, R.1    Datt Pant, B.2    Stitt, M.3    Scheible, W.R.4
  • 10
    • 71249118105 scopus 로고    scopus 로고
    • A loop-to-base processing mechanism underlies the biogenesis of plant microRNAs miR319 and miR159
    • Bologna, N.G., Mateos, J.L., Bresso, E.G., and Palatnik, J.F. (2009). A loop-to-base processing mechanism underlies the biogenesis of plant microRNAs miR319 and miR159. EMBO J. 28, 3646-3656.
    • (2009) EMBO J , vol.28 , pp. 3646-3656
    • Bologna, N.G.1    Mateos, J.L.2    Bresso, E.G.3    Palatnik, J.F.4
  • 12
    • 82355186184 scopus 로고    scopus 로고
    • Dehydration stress-responsive miRNA in Brachypodium distachyon: Evident by genome-wide screening of microRNAs expression
    • Budak, H., and Akpinar, A. (2011). Dehydration stress-responsive miRNA in Brachypodium distachyon: evident by genome-wide screening of microRNAs expression. OMICS. 15, 791-799.
    • (2011) OMICS , vol.15 , pp. 791-799
    • Budak, H.1    Akpinar, A.2
  • 13
    • 77956706698 scopus 로고    scopus 로고
    • Identification and characterization of a novel miR159 target not related to MYB in tomato
    • Buxdorf, K., Hendelman, A., Stav, R., Lapidot, M., ori, N., and Arazi, T. (2010). Identification and characterization of a novel miR159 target not related to MYB in tomato. Planta. 232, 1009-1022.
    • (2010) Planta. , vol.232 , pp. 1009-1022
    • Buxdorf, K.1    Hendelman, A.2    Stav, R.3    Lapidot, M.4    Ori, N.5    Arazi, T.6
  • 14
    • 0030471320 scopus 로고    scopus 로고
    • Drought as a challenge for the plant breeder
    • Ceccarelli, S., and Grando, S. (1996). Drought as a challenge for the plant breeder. Plant Growth Regulation. 20, 149-155.
    • (1996) Plant Growth Regulation , vol.20 , pp. 149-155
    • Ceccarelli, S.1    Grando, S.2
  • 16
    • 70350227275 scopus 로고    scopus 로고
    • Small RNAs and their roles in plant development. Annual Review of Cell and Developmental Biology
    • Chen, X. (2009). Small RNAs and their roles in plant development. Annual Review of Cell and Developmental Biology. Annu. Rev. Cell. Dev. Biol. 25, 21-44.
    • (2009) Annu. Rev. Cell. Dev. Biol , vol.25 , pp. 21-44
    • Chen, X.1
  • 19
    • 33745472447 scopus 로고    scopus 로고
    • The TORNADO1 and TORNADO2 genes function in several pat- terning processes during early leaf development in Arabidopsis thaliana
    • Cnops, G., Neyt, P., Raes, J., Petrarulo, M., Nelissen, H., Malenica, N., Luschnig, C., Tietz, o., Ditengou, F., Palme, K., et al. (2006). The TORNADO1 and TORNADO2 genes function in several pat- terning processes during early leaf development in Arabidopsis thaliana. Plant Cell. 18, 852-866.
    • (2006) Plant Cell , vol.18 , pp. 852-866
    • Cnops, G.1    Neyt, P.2    Raes, J.3    Petrarulo, M.4    Nelissen, H.5    Malenica, N.6    Luschnig, C.7    Tietz, O.8    Ditengou, F.9    Palme, K.10
  • 20
    • 79959967431 scopus 로고    scopus 로고
    • PsRNATarget: A plant small RNA tar- get analysis server
    • Dai, X., and Zhao, P.X. (2011). psRNATarget: a plant small RNA tar- get analysis server. Nucleic Acids Res. 39, W155-W159.
    • (2011) Nucleic Acids Res , vol.39
    • Dai, X.1    Zhao, P.X.2
  • 21
    • 79961204641 scopus 로고    scopus 로고
    • Stars and symbiosis: MicroRNA- and microRNA&z.ast;-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    • Devers, E.A., Branscheid, A., May, P., and Krajinski, F. (2011). Stars and symbiosis: microRNA- and microRNA&z.ast;-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis. Plant Physiol. 156, 1990-2010.
    • (2011) Plant Physiol. , vol.156 , pp. 1990-2010
    • Devers, E.A.1    Branscheid, A.2    May, P.3    Krajinski, F.4
  • 22
    • 34547587566 scopus 로고    scopus 로고
    • Antiviral immunity directed by small RNAs
    • Ding, S.-W., and Voinnet, o. (2007). Antiviral immunity directed by small RNAs. Cell. 130, 413-426.
    • (2007) Cell , vol.130 , pp. 413-426
    • Ding, S.-W.1    Voinnet, O.2
  • 23
    • 0033571563 scopus 로고    scopus 로고
    • Cell cycling and cell enlargement in developing leaves of Arabidopsis
    • Donnelly, P.M., Bonetta, D., Tsukaya, H., Dengler, R.E., and Dengler, N.G. (1999). Cell cycling and cell enlargement in developing leaves of Arabidopsis. Dev. Biol. 215, 407-419.
    • (1999) Dev. Biol , vol.215 , pp. 407-419
    • Donnelly, P.M.1    Bonetta, D.2    Tsukaya, H.3    Dengler, R.E.4    Dengler, N.G.5
  • 25
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar, R.C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 31
    • 33646192268 scopus 로고    scopus 로고
    • Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway
    • Garcia, D., Collier, S.A., Byrne, M.E., and Martienssen, R.A. (2006). Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway. Curr. Biol. 16, 933-938.
    • (2006) Curr. Biol , vol.16 , pp. 933-938
    • Garcia, D.1    Collier, S.A.2    Byrne, M.E.3    Martienssen, R.A.4
  • 34
    • 84861847190 scopus 로고    scopus 로고
    • Leaf size control: Complex coordination of cell division and expansion
    • Gonzalez, N., Vanhaeren, H., and Inze, D. (2012). Leaf size control: complex coordination of cell division and expansion. Trends Plant Sci. 17, 332-340
    • (2012) Trends Plant Sci , vol.17 , pp. 332-340
    • Gonzalez, N.1    Vanhaeren, H.2    Inze, D.3
  • 35
    • 74249114752 scopus 로고    scopus 로고
    • Expression analysis suggests potential roles of microRNAs for phosphate and arbuscular mycorrhizal signaling in Solanum lycopersicum
    • Gu, M., Xu, K., Chen, A., Zhu, Y., Tang, G., and Xu, G. (2010). Expression analysis suggests potential roles of microRNAs for phosphate and arbuscular mycorrhizal signaling in Solanum lycopersicum. Physiol. Plant. 138, 226-237.
    • (2010) Physiol. Plant , vol.138 , pp. 226-237
    • Gu, M.1    Xu, K.2    Chen, A.3    Zhu, Y.4    Tang, G.5    Xu, G.6
  • 38
    • 13244275218 scopus 로고    scopus 로고
    • Quantitative trait loci affecting delta C-13 and response to differential water availability in Arabidopsis thaliana
    • Hausmann, N.J., Juenger, T.E., Sen, S., Stowe, K.A., Dawson, T.E., and Simms, E.L. (2005). Quantitative trait loci affecting delta C-13 and response to differential water availability in Arabidopsis thaliana. Evolution. 59, 81-96.
    • (2005) Evolution , vol.59 , pp. 81-96
    • Hausmann, N.J.1    Juenger, T.E.2    Sen, S.3    Stowe, K.A.4    Dawson, T.E.5    Simms, E.L.6
  • 39
    • 0344708475 scopus 로고    scopus 로고
    • Tetraspanin proteins mediate cellular pen-etration, invasion, and fusion events and define a novel type of membrane microdomain
    • Hemler, M.E. (2003). Tetraspanin proteins mediate cellular pen-etration, invasion, and fusion events and define a novel type of membrane microdomain. Annu. Rev. Cell Dev. Biol. 19, 397-422.
    • (2003) Annu. Rev. Cell Dev. Biol , vol.19 , pp. 397-422
    • Hemler, M.E.1
  • 40
    • 77950418344 scopus 로고    scopus 로고
    • Research on plant abiotic stress responses in the post-genome era: Past, present and future
    • Hirayama, T., and Shinozaki, K. (2010). Research on plant abiotic stress responses in the post-genome era: past, present and future. Plant J. 61, 1041-1052.
    • (2010) Plant J , vol.61 , pp. 1041-1052
    • Hirayama, T.1    Shinozaki, K.2
  • 42
    • 33748364557 scopus 로고    scopus 로고
    • Overexpressing a NAM, ATAF, and CUC (NAC) transcrip-tion factor enhances drought resistance and salt tolerance in rice
    • Hu, H., Dai, M., Yao, J., Xiao, B., Li, X., Zhang, Q., and Xiong, L. (2006). Overexpressing a NAM, ATAF, and CUC (NAC) transcrip-tion factor enhances drought resistance and salt tolerance in rice. Proc. Natl Acad. Sci. U S A. 103, 12987-12992.
    • (2006) Proc. Natl Acad. Sci. U S A , vol.103 , pp. 12987-12992
    • Hu, H.1    Dai, M.2    Yao, J.3    Xiao, B.4    Li, X.5    Zhang, Q.6    Xiong, L.7
  • 44
    • 84863012576 scopus 로고    scopus 로고
    • Massive analysis of rice small RNAs: Mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    • Jeong, D. H., Park, S., Zhai, J., Gurazada, S.G., De Paoli, E., Meyers, B.C., and Green, P.J. (2011). Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage. Plant Cell. 23, 4185-4207.
    • (2011) Plant Cell , vol.23 , pp. 4185-4207
    • Jeong, D.H.1    Park, S.2    Zhai, J.3    Gurazada, S.G.4    De Paoli, E.5    Meyers, B.C.6    Green, P.J.7
  • 45
    • 53749083993 scopus 로고    scopus 로고
    • SeqMap: Mapping massive amount of oligonucleotides to the genome
    • Jiang, H., and Wong, W.H. (2008). SeqMap: mapping massive amount of oligonucleotides to the genome. Bioinformatics. 24, 2395-2396.
    • (2008) Bioinformatics , vol.24 , pp. 2395-2396
    • Jiang, H.1    Wong, W.H.2
  • 47
    • 79959832855 scopus 로고    scopus 로고
    • Genetic control of plant organ growth
    • Johnson, K., and Lenhard, M. (2011). Genetic control of plant organ growth. New Phytologist. 191, 319-333.
    • (2011) New Phytologist , vol.191 , pp. 319-333
    • Johnson, K.1    Lenhard, M.2
  • 48
    • 0033853292 scopus 로고    scopus 로고
    • The effect of water stress on 1-(malonylamino)cyclopropane-1-carboxylic acid concentration in plant tissues
    • Kalantari, K.M., Smith, A.R., and Hall, M.A. (2000). The effect of water stress on 1-(malonylamino)cyclopropane-1-carboxylic acid concentration in plant tissues. Plant Growth Regulation. 31, 183-193.
    • (2000) Plant Growth Regulation , vol.31 , pp. 183-193
    • Kalantari, K.M.1    Smith, A.R.2    Hall, M.A.3
  • 49
    • 55249089227 scopus 로고    scopus 로고
    • Genome-wide identification, organization and phylogenetic analysis of dicer-like, argo-naute and RNA-dependent RNA polymerase gene families and their expression analysis during reproductive development and stress in rice
    • Kapoor, M., Arora, R., Lama, T., Nijhawan, A., Khurana, J.P., Tyagi, A.K., and Kapoor, S. (2008). Genome-wide identification, organization and phylogenetic analysis of dicer-like, argo-naute and RNA-dependent RNA polymerase gene families and their expression analysis during reproductive development and stress in rice. BMC Genomics. 9, 451.
    • (2008) BMC Genomics , vol.9 , pp. 451
    • Kapoor, M.1    Arora, R.2    Lama, T.3    Nijhawan, A.4    Khurana, J.P.5    Tyagi, A.K.6    Kapoor, S.7
  • 50
    • 33744956046 scopus 로고    scopus 로고
    • Novel characteristics of UDP-glucose dehydrogenase activities in maize: Non-involvement of alcohol dehydrogenases in cell wall polysaccharide biosynthe-sis
    • Karkonen, A., and Fry, S.C. (2006). Novel characteristics of UDP-glucose dehydrogenase activities in maize: non-involvement of alcohol dehydrogenases in cell wall polysaccharide biosynthe-sis. Planta. 223, 858-870.
    • (2006) Planta , vol.223 , pp. 858-870
    • Karkonen, A.1    Fry, S.C.2
  • 51
    • 76649099558 scopus 로고    scopus 로고
    • The many roles of small RNAs in leaf develop-ment
    • Kidner, C.A. (2010). The many roles of small RNAs in leaf develop-ment. Journal of Genetics and Genomics. 37, 13-21.
    • (2010) Journal of Genetics and Genomics , vol.37 , pp. 13-21
    • Kidner, C.A.1
  • 52
    • 0141872963 scopus 로고    scopus 로고
    • The AtGRF family of putative transcription factors is involved in leaf and cotyledon growth in Arabidopsis
    • Kim, J.H., Choi, D., and Kende, H. (2003). The AtGRF family of putative transcription factors is involved in leaf and cotyledon growth in Arabidopsis. Plant J. 36, 94-104.
    • (2003) Plant J , vol.36 , pp. 94-104
    • Kim, J.H.1    Choi, D.2    Kende, H.3
  • 53
    • 36849006993 scopus 로고    scopus 로고
    • Genome-wide analysis of the UDP-glucose dehydrogenase gene family in Arabidopsis, a key enzyme for matrix polysaccharides in cell walls
    • Klinghammer, M., and Tenhaken, R. (2007). Genome-wide analysis of the UDP-glucose dehydrogenase gene family in Arabidopsis, a key enzyme for matrix polysaccharides in cell walls. J. Exp. Bot. 58, 3609-3621.
    • (2007) J. Exp. Bot , vol.58 , pp. 3609-3621
    • Klinghammer, M.1    Tenhaken, R.2
  • 54
    • 78650854673 scopus 로고    scopus 로고
    • TCP transcription factors regulate the activi-ties of ASYMMETRIC LEAVES1 and miR164, as well as the auxin response, during differentiation of leaves in Arabidopsis
    • Koyama, T., Mitsuda, N., Seki, M., Shinozaki, K., and ohme-Takagi, M. (2010). TCP transcription factors regulate the activi-ties of ASYMMETRIC LEAVES1 and miR164, as well as the auxin response, during differentiation of leaves in Arabidopsis. Plant Cell. 22, 3574-3588.
    • (2010) Plant Cell. , vol.22 , pp. 3574-3588
    • Koyama, T.1    Mitsuda, N.2    Seki, M.3    Shinozaki, K.4    Ohme-Takagi, M.5
  • 55
    • 21544469418 scopus 로고    scopus 로고
    • MicroRNA172 down-regulates glossy15 to promote veg- etative phase change in maize
    • Lauter, N., Kampani, A., Carlson, S., Goebel, M., and Moose, S.P. (2005). microRNA172 down-regulates glossy15 to promote veg- etative phase change in maize. Proc. Natl Acad. Sci. U S A. 102, 9412-9417.
    • (2005) Proc. Natl Acad. Sci. U S A , vol.102 , pp. 9412-9417
    • Lauter, N.1    Kampani, A.2    Carlson, S.3    Goebel, M.4    Moose, S.P.5
  • 56
    • 79960962421 scopus 로고    scopus 로고
    • Diverse small non-coding RNAs in RNA interference pathways
    • Li, L., and Liu, Y. (2011). Diverse small non-coding RNAs in RNA interference pathways. Methods Mol. Biol. 764, 169-182.
    • (2011) Methods Mol. Biol , vol.764 , pp. 169-182
    • Li, L.1    Liu, Y.2
  • 57
    • 40049104732 scopus 로고    scopus 로고
    • SOAP: Short oli- gonucleotide alignment program
    • Li, R., Li, Y., Kristiansen, K., and Wang, J. (2008a). SOAP: short oli- gonucleotide alignment program. Bioinformatics. 24, 713-714.
    • (2008) Bioinformatics , vol.24 , pp. 713-714
    • Li, R.1    Li, Y.2    Kristiansen, K.3    Wang, J.4
  • 59
    • 57749110646 scopus 로고    scopus 로고
    • The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and post- transcriptionally to promote drought resistance
    • Li, W.X., oono, Y., Zhu, J., He, X.J., Wu, J.M., Iida, K., Lu, X.Y., Cui, X., Jin, H., and Zhu, J.K. (2008b). The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and post- transcriptionally to promote drought resistance. Plant Cell. 20, 2238-2251.
    • (2008) Plant Cell. , vol.20 , pp. 2238-2251
    • Li, W.X.1    Oono, Y.2    Zhu, J.3    He, X.J.4    Wu, J.M.5    Iida, K.6    Lu, X.Y.7    Cui, X.8    Jin, H.9    Zhu, J.K.10
  • 60
    • 27744471144 scopus 로고    scopus 로고
    • Novel and mechanical stress-responsive microRNAs in Populus trichocarpa that are absent from Arabidopsis
    • Lu, S.F., Sun, Y.H., Shi, R., Clark, C., Li, L.G., and Chiang, V.L. (2005). Novel and mechanical stress-responsive microRNAs in Populus trichocarpa that are absent from Arabidopsis. Plant Cell. 17, 2186-2203.
    • (2005) Plant Cell , vol.17 , pp. 2186-2203
    • Lu, S.F.1    Sun, Y.H.2    Shi, R.3    Clark, C.4    Li, L.G.5    Chiang, V.L.6
  • 61
    • 73449098946 scopus 로고    scopus 로고
    • TCP genes: A family snap- shot ten years later
    • Martin-Trillo, M., and Cubas, P. (2010). TCP genes: a family snap- shot ten years later. Trends Plant Sci. 15, 31-39.
    • (2010) Trends Plant Sci , vol.15 , pp. 31-39
    • Martin-Trillo, M.1    Cubas, P.2
  • 62
    • 79957578583 scopus 로고    scopus 로고
    • Experimental design, preprocessing, normalization and differential expres-sion analysis of small RNA sequencing experiments
    • McCormick, K., Willmann, M., and Meyers, B. (2011). Experimental design, preprocessing, normalization and differential expres-sion analysis of small RNA sequencing experiments. Silence. 2, 2.
    • (2011) Silence. , vol.2 , pp. 2
    • McCormick, K.1    Willmann, M.2    Meyers, B.3
  • 63
    • 81255210925 scopus 로고    scopus 로고
    • Construction of microRNA- and microRNA&z.ast;-mediated regulatory networks in plants
    • Meng, Y., Shao, C., Gou, L., Jin, Y., and Chen, M. (2011). Construction of microRNA- and microRNA&z.ast;-mediated regulatory networks in plants. RNA Biol. 8, 1124-1148.
    • (2011) RNA Biol , vol.8 , pp. 1124-1148
    • Meng, Y.1    Shao, C.2    Gou, L.3    Jin, Y.4    Chen, M.5
  • 65
    • 41349114789 scopus 로고    scopus 로고
    • Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide
    • Mi, S., Cai, T., Hu, Y., Chen, Y., Hodges, E., Ni, F., Wu, L., Li, S., Zhou, H., Long, C. et al. (2008). Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide. Cell. 133, 116-127.
    • (2008) Cell , vol.133 , pp. 116-127
    • Mi, S.1    Cai, T.2    Hu, Y.3    Chen, Y.4    Hodges, E.5    Ni, F.6    Wu, L.7    Li, S.8    Zhou, H.9    Long, C.10
  • 66
    • 77952403409 scopus 로고    scopus 로고
    • Small silencing RNAs in plants are mobile and direct epigenetic modification in recipient cells
    • Molnar, A., Melnyk, C.W., Bassett, A., Hardcastle, T.J., Dunn, R., and Baulcombe, D.C. (2010). Small silencing RNAs in plants are mobile and direct epigenetic modification in recipient cells. Science. 328, 872-875.
    • (2010) Science , vol.328 , pp. 872-875
    • Molnar, A.1    Melnyk, C.W.2    Bassett, A.3    Hardcastle, T.J.4    Dunn, R.5    Baulcombe, D.C.6
  • 69
    • 34147154680 scopus 로고    scopus 로고
    • Two small regulatory RNAs estab-lish opposing fates of a developmental axis
    • Nogueira, F.T., Madi, S., Chitwood, D.H., Juarez, M.T., and Timmermans, M.C. (2007). Two small regulatory RNAs estab-lish opposing fates of a developmental axis. Genes Dev. 21, 750-755.
    • (2007) Genes Dev , vol.21 , pp. 750-755
    • Nogueira, F.T.1    Madi, S.2    Chitwood, D.H.3    Juarez, M.T.4    Timmermans, M.C.5
  • 71
    • 85046916360 scopus 로고    scopus 로고
    • Further analysis of XBAT32, an Arabidopsis RING E3 ligase, involved in ethylene biosynthesis
    • Prasad, M.E., and Stone, S.L. (2010). Further analysis of XBAT32, an Arabidopsis RING E3 ligase, involved in ethylene biosynthesis. Plant Signal Behav. 5, 1425-1429.
    • (2010) Plant Signal Behav , vol.5 , pp. 1425-1429
    • Prasad, M.E.1    Stone, S.L.2
  • 72
    • 77955686446 scopus 로고    scopus 로고
    • Arabidopsis RING E3 ligase XBAT32 regulates lateral root production through its role in ethylene biosynthesis
    • Prasad, M.E., Schofield, A., Lyzenga, W., Liu, H., and Stone, S.L. (2010). Arabidopsis RING E3 ligase XBAT32 regulates lateral root production through its role in ethylene biosynthesis. Plant Physiol. 153, 1587-1596.
    • (2010) Plant Physiol , vol.153 , pp. 1587-1596
    • Prasad, M.E.1    Schofield, A.2    Lyzenga, W.3    Liu, H.4    Stone, S.L.5
  • 73
    • 77949389564 scopus 로고    scopus 로고
    • Co-ordination of developmental processes by small RNAs during leaf development
    • Pulido, A., and Laufs, P. (2010). Co-ordination of developmental processes by small RNAs during leaf development. J. Exp. Bot. 61, 1277-1291.
    • (2010) J. Exp. Bot , vol.61 , pp. 1277-1291
    • Pulido, A.1    Laufs, P.2
  • 75
    • 79955705363 scopus 로고    scopus 로고
    • MicroRNA networks and developmental plasticity in plants
    • Rubio-Somoza, I., and Weigel, D. (2011). MicroRNA networks and developmental plasticity in plants. Trends Plant Sci. 16, 258-264.
    • (2011) Trends Plant Sci. , vol.16 , pp. 258-264
    • Rubio-Somoza, I.1    Weigel, D.2
  • 76
    • 70349556320 scopus 로고    scopus 로고
    • Regulation and functional specialization of small RNA-target nodes during plant development
    • Rubio-Somoza, I., Cuperus, J.T., Weige, D., and Carrington, J.C. (2009). Regulation and functional specialization of small RNA-target nodes during plant development. Curr. Opin. Plant Biol. 12, 622-627.
    • (2009) Curr. Opin. Plant Biol , vol.12 , pp. 622-627
    • Rubio-Somoza, I.1    Cuperus, J.T.2    Weige, D.3    Carrington, J.C.4
  • 78
    • 34248185047 scopus 로고    scopus 로고
    • Regulatory metabolic networks in drought stress responses
    • Seki, M., umezawa, T., urano, K., and Shinozaki, K. (2007). Regulatory metabolic networks in drought stress responses. Curr. Opin. Plant Biol. 10, 296-302.
    • (2007) Curr. Opin. Plant Biol , vol.10 , pp. 296-302
    • Seki, M.1    Umezawa, T.2    Urano, K.3    Shinozaki, K.4
  • 79
    • 78650516088 scopus 로고    scopus 로고
    • Global expression profiling of rice microRNAs by one-tube stem-loop reverse transcription quantitative PCR revealed important roles of microRNAs in abi-otic stress responses
    • Shen, J., Xie, K., and Xiong, L (2010). Global expression profiling of rice microRNAs by one-tube stem-loop reverse transcription quantitative PCR revealed important roles of microRNAs in abi-otic stress responses. Mol. Genet. Genomics. 284, 477-488.
    • (2010) Mol. Genet. Genomics , vol.284 , pp. 477-488
    • Shen, J.1    Xie, K.2    Xiong, L.3
  • 80
    • 30344456035 scopus 로고    scopus 로고
    • Facile means for quantifying micro-RNA expression by real-time PCR
    • Shi, R., and Chiang, V.L. (2005). Facile means for quantifying micro-RNA expression by real-time PCR. Biotechniques. 39, 519-525.
    • (2005) Biotechniques , vol.39 , pp. 519-525
    • Shi, R.1    Chiang, V.L.2
  • 81
    • 33846798370 scopus 로고    scopus 로고
    • Gene networks involved in drought stress response and tolerance
    • Shinozaki, K., and Yamaguchi-Shinozaki, K. (2007). Gene networks involved in drought stress response and tolerance. J. Exp. Bot. 58, 221-227.
    • (2007) J. Exp. Bot , vol.58 , pp. 221-227
    • Shinozaki, K.1    Yamaguchi-Shinozaki, K.2
  • 83
    • 79959839056 scopus 로고    scopus 로고
    • Pause-and-stop the effects of osmotic stress on cell proliferation during early leaf development in Arabidopsis and a role for ethylene signaling in cell cycle arrest
    • Skirycz, A., Claeys, H., De Bodt, S., oikawa, A., Shinoda, S., Andriankaja, M., Maleux, K., Eloy, N.B., Coppens, F., Yoo, S.D., et al. (2011). Pause-and-stop: the effects of osmotic stress on cell proliferation during early leaf development in Arabidopsis and a role for ethylene signaling in cell cycle arrest. Plant Cell. 23, 1876-1888.
    • (2011) Plant Cell , vol.23 , pp. 1876-1888
    • Skirycz, A.1    Claeys, H.2    De Bodt, S.3    Oikawa, A.4    Shinoda, S.5    Andriankaja, M.6    Maleux, K.7    Eloy, N.B.8    Coppens, F.9    Yoo, S.D.10
  • 84
    • 8444221718 scopus 로고    scopus 로고
    • Long-distance signals regulating stomatal conduct-ance and leaf growth in tomato (Lycopersicon esculentum) plants subjected to partial root-zone drying
    • Sobeih, W.Y., Dodd, I.C., Bacon, M.A., Grierson, D., and Davies, W.J. (2004). Long-distance signals regulating stomatal conduct-ance and leaf growth in tomato (Lycopersicon esculentum) plants subjected to partial root-zone drying. J. Exp. Bot. 55, 2353-2363.
    • (2004) J. Exp. Bot , vol.55 , pp. 2353-2363
    • Sobeih, W.Y.1    Dodd, I.C.2    Bacon, M.A.3    Grierson, D.4    Davies, W.J.5
  • 85
    • 84866405637 scopus 로고    scopus 로고
    • Regulation of leaf morphology by microRNA394 and its target LEAF CURLING RESPONSIVENESS. Plant Cell Physiol. 53, 1283-1294 Erratum
    • 2012
    • Song, J.B., Huang, S.Q., Dalmay, T., and Yang, Z.M. (2012). Regulation of leaf morphology by microRNA394 and its target LEAF CURLING RESPONSIVENESS. Plant Cell Physiol. 53, 1283-1294 Erratum in: Plant Cell Physiol. (2012). 53, 1669.
    • (2012) Plant Cell Physiol , vol.53 , pp. 1669
    • Song, J.B.1    Huang, S.Q.2    Dalmay, T.3    Yang, Z.M.4
  • 86
    • 84865121074 scopus 로고    scopus 로고
    • The UEA sRNA workbench: A suite of tools for analys-ing and visualizing next generation sequencing microRNA and small RNA datasets
    • Stocks, M.B., Moxon, S., Mapleson, D., Woolfenden, H.C., Mohorianu, I., Folkes, L., Schwach, F., Dalmay, T., and Moulton V. (2012). The UEA sRNA workbench: a suite of tools for analys-ing and visualizing next generation sequencing microRNA and small RNA datasets. Bioinformatics. 28, 2059-2061.
    • (2012) Bioinformatics , vol.28 , pp. 2059-2061
    • Stocks, M.B.1    Moxon, S.2    Mapleson, D.3    Woolfenden, H.C.4    Mohorianu, I.5    Folkes, L.6    Schwach, F.7    Dalmay, T.8    Moulton, V.9
  • 87
    • 78049275325 scopus 로고    scopus 로고
    • MicroRNAs with macro-effects on plant stress responses
    • Sunkar, R. (2010). MicroRNAs with macro-effects on plant stress responses. Seminars in Cell and Developmental Biology. 21, 805-811.
    • (2010) Seminars in Cell and Developmental Biology , vol.21 , pp. 805-811
    • Sunkar, R.1
  • 88
    • 33747505089 scopus 로고    scopus 로고
    • Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance
    • Sunkar, R., Kapoor, A., and Zhu, J.K. (2006). Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. Plant Cell. 18, 2051-2065.
    • (2006) Plant Cell , vol.18 , pp. 2051-2065
    • Sunkar, R.1    Kapoor, A.2    Zhu, J.K.3
  • 89
    • 34547489084 scopus 로고    scopus 로고
    • Improvement of phyloge-nies after removing divergent and ambiguously aligned blocks from protein sequence alignments
    • Talavera, G., and Castresana, J. (2007). Improvement of phyloge-nies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst. Biol. 56, 564-577.
    • (2007) Syst. Biol , vol.56 , pp. 564-577
    • Talavera, G.1    Castresana, J.2
  • 90
    • 76749109506 scopus 로고    scopus 로고
    • Breeding technologies to increase crop production in a changing world
    • Tester, M., and Langridge, P. (2010). Breeding technologies to increase crop production in a changing world. Science. 327, 818-822.
    • (2010) Science , vol.327 , pp. 818-822
    • Tester, M.1    Langridge, P.2
  • 91
    • 69249215127 scopus 로고    scopus 로고
    • Conserved microRNAs and their targets in model grass species Brachypodium distachyon
    • unver, T., and Budak, H. (2009). Conserved microRNAs and their targets in model grass species Brachypodium distachyon. Planta. 230, 659-669.
    • (2009) Planta , vol.230 , pp. 659-669
    • Unver, T.1    Budak, H.2
  • 92
    • 66149087734 scopus 로고    scopus 로고
    • The more and smaller cells mutants of Arabidopsis thaliana iden-tify novel roles for SQUAMOSA PROMOTER BINDING PROTEIN-LIKE genes in the control of heteroblasty
    • usami, T., Horiguchi, G., Yano, S., and Tsukaya, H. (2009). The more and smaller cells mutants of Arabidopsis thaliana iden-tify novel roles for SQUAMOSA PROMOTER BINDING PROTEIN-LIKE genes in the control of heteroblasty. Development. 136, 955-964.
    • (2009) Development , vol.136 , pp. 955-964
    • Usami, T.1    Horiguchi, G.2    Yano, S.3    Tsukaya, H.4
  • 93
    • 33645528966 scopus 로고    scopus 로고
    • Post-transcriptional small RNA pathways in plants: Mechanisms and regulations
    • Vaucheret, H. (2006). Post-transcriptional small RNA pathways in plants: mechanisms and regulations. Genes Dev. 20, 759-771.
    • (2006) Genes Dev , vol.20 , pp. 759-771
    • Vaucheret, H.1
  • 94
    • 33747772001 scopus 로고    scopus 로고
    • Arabidopsis endogenous small RNAs: Highways and byways
    • Vazquez, F. (2006). Arabidopsis endogenous small RNAs: highways and byways. Trends Plant Sci. 11, 460-468.
    • (2006) Trends Plant Sci , vol.11 , pp. 460-468
    • Vazquez, F.1
  • 95
    • 77953461424 scopus 로고    scopus 로고
    • The biosynthetic pathways and biological scopes of plant small RNAs
    • Vazquez, F., Legrand, S., and Windels, D. (2010). The biosynthetic pathways and biological scopes of plant small RNAs. Trends Plant Sci. 15, 337-345.
    • (2010) Trends Plant Sci. , vol.15 , pp. 337-345
    • Vazquez, F.1    Legrand, S.2    Windels, D.3
  • 96
    • 84875616480 scopus 로고    scopus 로고
    • Molecular and physiological analysis of growth-limiting drought stress in Brachypodium dis-tachyon leaves
    • Verelst, W., Bertolini, E., De Bodt, S., Vandepoele, K., Demeulenaere, M., Pè, M.E., and Inzé, D. (2012). Molecular and physiological analysis of growth-limiting drought stress in Brachypodium dis-tachyon leaves. Mol. Plant. 6, 311-322.
    • (2012) Mol. Plant. , vol.6 , pp. 311-322
    • Verelst, W.1    Bertolini, E.2    De Bodt, S.3    Vandepoele, K.4    Demeulenaere, M.5    Pè, M.E.6    Inzé, D.7
  • 99
    • 0038381027 scopus 로고    scopus 로고
    • The CUP-SHAPED COTYLEDON3 gene is required for boundary and shoot meristem formation in Arabidopsis
    • Vroemen, C.W., Mordhorst, A.P., Albrecht, C., Kwaaitaal, M.A., and de Vries, S.C. (2003). The CUP-SHAPED COTYLEDON3 gene is required for boundary and shoot meristem formation in Arabidopsis. Plant Cell. 15, 1563-1577.
    • (2003) Plant Cell , vol.15 , pp. 1563-1577
    • Vroemen, C.W.1    Mordhorst, A.P.2    Albrecht, C.3    Kwaaitaal, M.A.4    De Vries, S.C.5
  • 100
    • 70350029271 scopus 로고    scopus 로고
    • Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv
    • Wei, B., Cai, T., Zhang, R., Li, A., Huo, N., Li, S., Gu, Y.Q., Vogel, J., Jia, J., Qi, Y., et al. (2009). Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv. Functional Integrative Genomics. 9, 499-511.
    • (2009) Functional Integrative Genomics , vol.9 , pp. 499-511
    • Wei, B.1    Cai, T.2    Zhang, R.3    Li, A.4    Huo, N.5    Li, S.6    Gu, Y.Q.7    Vogel, J.8    Jia, J.9    Qi, Y.10
  • 102
    • 30344447264 scopus 로고    scopus 로고
    • Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine
    • Xue, C., Li, F., He, T., Liu, G.P., Li, Y., and Zhang, X. (2005). Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine. BMC Bioinformatics. 6, 310.
    • (2005) BMC Bioinformatics. , vol.6 , pp. 310
    • Xue, C.1    Li, F.2    He, T.3    Liu, G.P.4    Li, Y.5    Zhang, X.6
  • 103
    • 63349083143 scopus 로고    scopus 로고
    • Characterization and expression profiles of miRNAs in rice seeds
    • Xue, L.J., Zhang, J.J., and Xue, H.W. (2009). Characterization and expression profiles of miRNAs in rice seeds. Nucleic Acids Res. 37, 916-930.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 916-930
    • Xue, L.J.1    Zhang, J.J.2    Xue, H.W.3
  • 104
    • 84865564453 scopus 로고    scopus 로고
    • Ggbio: An R package for extending the grammar of graphics for genomic data
    • Yin, T., Cook, D., and Lawrence, M. (2012). ggbio: an R package for extending the grammar of graphics for genomic data. Genome Biol. 13, R77.
    • (2012) Genome Biol , vol.13
    • Yin, T.1    Cook, D.2    Lawrence, M.3
  • 105
    • 82955207556 scopus 로고    scopus 로고
    • MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    • Zhai, J., Jeong, D.H., De Paoli, E., Park, S., Rosen, B.D., Li, Y., González, A.J., Yan, Z., Kitto, S.L., Grusak, M.A., et al. (2011). MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs. Genes Dev. 25, 2540-2553.
    • (2011) Genes Dev , vol.25 , pp. 2540-2553
    • Zhai, J.1    Jeong, D.H.2    De Paoli, E.3    Park, S.4    Rosen, B.D.5    Li, Y.6    González, A.J.7    Yan, Z.8    Kitto, S.L.9    Grusak, M.A.10
  • 106
    • 70350438585 scopus 로고    scopus 로고
    • Deep sequencing of Brachypodium small RNAs at the global genome level identi- fies microRNAs involved in cold stress response
    • Zhang, J., Xu, Y., Huan, Q., and Chong, K. (2009). Deep sequencing of Brachypodium small RNAs at the global genome level identi- fies microRNAs involved in cold stress response. BMC Genomics. 10, 449.
    • (2009) BMC Genomics , vol.10 , pp. 449
    • Zhang, J.1    Xu, Y.2    Huan, Q.3    Chong, K.4
  • 107
    • 78651434625 scopus 로고    scopus 로고
    • Over-expression of microRNA169 confers enhanced drought tolerance to tomato
    • Zhang, X., Zou, Z., Gong, P., Zhang, J., Ziaf, K., Li, H., Xiao, F., and Ye, Z. (2011). Over-expression of microRNA169 confers enhanced drought tolerance to tomato. Biotechnol. Lett. 33, 403-409.
    • (2011) Biotechnol. Lett , vol.33 , pp. 403-409
    • Zhang, X.1    Zou, Z.2    Gong, P.3    Zhang, J.4    Ziaf, K.5    Li, H.6    Xiao, F.7    Ye, Z.8
  • 109
    • 77958031243 scopus 로고    scopus 로고
    • Genome-wide identification and analysis of drought- responsive microRNAs in Oryza sativa
    • Zhou, L., Liu, Y., Liu, Z., Kong, D., Duan, M., and Luo, L. (2010). Genome-wide identification and analysis of drought- responsive microRNAs in Oryza sativa. J. Exp. Bot. 61, 4157-4168.
    • (2010) J. Exp. Bot , vol.61 , pp. 4157-4168
    • Zhou, L.1    Liu, Y.2    Liu, Z.3    Kong, D.4    Duan, M.5    Luo, L.6
  • 110
    • 80051554563 scopus 로고    scopus 로고
    • MiR398 and plant stress responses
    • Zhu, C., Ding, Y., and Liu, H. (2011). MiR398 and plant stress responses. Physiol. Plant. 143, 1-9.
    • (2011) Physiol. Plant , vol.143 , pp. 1-9
    • Zhu, C.1    Ding, Y.2    Liu, H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.