메뉴 건너뛰기




Volumn 26, Issue 5, 2014, Pages 1878-1900

mRNA and small RNA transcriptomes reveal insights into dynamic homoeolog regulation of allopolyploid heterosis in nascent hexaploid wheat

Author keywords

[No Author keywords available]

Indexed keywords


EID: 84903618373     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.114.124388     Document Type: Article
Times cited : (257)

References (101)
  • 1
    • 84871788221 scopus 로고    scopus 로고
    • Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat
    • Akhunov, E.D., et al. (2013). Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat. Plant Physiol. 161: 252-265.
    • (2013) Plant Physiol. , vol.161 , pp. 252-265
    • Akhunov, E.D.1
  • 2
    • 79952114068 scopus 로고    scopus 로고
    • Homoeolog-specific transcriptional bias in allopolyploid wheat
    • Akhunova, A.R., Matniyazov, R.T., Liang, H., and Akhunov, E.D. (2010). Homoeolog-specific transcriptional bias in allopolyploid wheat. BMC Genomics 11: 505.
    • (2010) BMC Genomics , vol.11 , pp. 505
    • Akhunova, A.R.1    Matniyazov, R.T.2    Liang, H.3    Akhunov, E.D.4
  • 4
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders, S., and Huber, W. (2010). Differential expression analysis for sequence count data. Genome Biol. 11: R106.
    • (2010) Genome Biol. , vol.11
    • Anders, S.1    Huber, W.2
  • 5
    • 84886340414 scopus 로고    scopus 로고
    • Reprogramming of gene expression in the genetically stable bread allohexaploid wheat
    • In Z.J. Chen and J.A. Birchler, eds (Hoboken, NJ: John Wiley & Sons)
    • Arnaud, D., Chelaifa, H., Jahier, J., and Chalhoub, B. (2013). Reprogramming of gene expression in the genetically stable bread allohexaploid wheat. In Polyploid and Hybrid Genomics, Z.J. Chen and J.A. Birchler, eds (Hoboken, NJ: John Wiley & Sons), pp. 195-211.
    • (2013) Polyploid and Hybrid Genomics , pp. 195-211
    • Arnaud, D.1    Chelaifa, H.2    Jahier, J.3    Chalhoub, B.4
  • 6
    • 0027947023 scopus 로고
    • Complementary gene interactions in alfalfa are greater in autotetraploids than diploids
    • Bingham, E.T., Groose, R.W., Woodfield, D.R., and Kidwell, K.K. (1994). Complementary gene interactions in alfalfa are greater in autotetraploids than diploids. Crop Sci. 34: 823-829.
    • (1994) Crop Sci. , vol.34 , pp. 823-829
    • Bingham, E.T.1    Groose, R.W.2    Woodfield, D.R.3    Kidwell, K.K.4
  • 7
    • 33748319356 scopus 로고    scopus 로고
    • Homoeologous gene silencing in hexaploid wheat
    • Bottley, A., Xia, G.M., and Koebner, R.M.D. (2006). Homoeologous gene silencing in hexaploid wheat. Plant J. 47: 897-906.
    • (2006) Plant J. , vol.47 , pp. 897-906
    • Bottley, A.1    Xia, G.M.2    Koebner, R.M.D.3
  • 8
    • 84870260198 scopus 로고    scopus 로고
    • Analysis of the bread wheat genome using whole-genome shotgun sequencing
    • Brenchley, R., et al. (2012). Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature 491: 705-710.
    • (2012) Nature , vol.491 , pp. 705-710
    • Brenchley, R.1
  • 10
    • 84881243153 scopus 로고    scopus 로고
    • Polyploids exhibit higher potassium uptake and salinity tolerance in Arabidopsis
    • Chao, D.Y., Dilkes, B., Luo, H., Douglas, A., Yakubova, E., Lahner, B., and Salt, D.E. (2013). Polyploids exhibit higher potassium uptake and salinity tolerance in Arabidopsis. Science 341: 658-659.
    • (2013) Science , vol.341 , pp. 658-659
    • Chao, D.Y.1    Dilkes, B.2    Luo, H.3    Douglas, A.4    Yakubova, E.5    Lahner, B.6    Salt, D.E.7
  • 11
    • 84872127434 scopus 로고    scopus 로고
    • Prevalence of gene expression additivity in genetically stable wheat allohexaploids
    • Chelaifa, H., et al. (2013). Prevalence of gene expression additivity in genetically stable wheat allohexaploids. New Phytol. 197: 730-736.
    • (2013) New Phytol. , vol.197 , pp. 730-736
    • Chelaifa, H.1
  • 12
    • 43349107538 scopus 로고    scopus 로고
    • Using RepeatMasker to identify repetitive elements in genomic sequences
    • Chen, N. (2004). Using RepeatMasker to identify repetitive elements in genomic sequences. Curr. Protoc. Bioinformatics Chapter 4: 10.
    • (2004) Curr. Protoc. Bioinformatics Chapter , vol.4 , pp. 10
    • Chen, N.1
  • 13
    • 34248328910 scopus 로고    scopus 로고
    • Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids
    • Chen, Z.J. (2007). Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids. Annu. Rev. Plant Biol. 58: 377-406.
    • (2007) Annu. Rev. Plant Biol. , vol.58 , pp. 377-406
    • Chen, Z.J.1
  • 14
    • 75949117260 scopus 로고    scopus 로고
    • Molecular mechanisms of polyploidy and hybrid vigor
    • Chen, Z.J. (2010). Molecular mechanisms of polyploidy and hybrid vigor. Trends Plant Sci. 15: 57-71.
    • (2010) Trends Plant Sci. , vol.15 , pp. 57-71
    • Chen, Z.J.1
  • 15
    • 84879412664 scopus 로고    scopus 로고
    • Genomic and epigenetic insights into the molecular bases of heterosis
    • Chen, Z.J. (2013). Genomic and epigenetic insights into the molecular bases of heterosis. Nat. Rev. Genet. 14: 471-482.
    • (2013) Nat. Rev. Genet. , vol.14 , pp. 471-482
    • Chen, Z.J.1
  • 16
    • 84860424914 scopus 로고    scopus 로고
    • Biased gene fractionation and dominant gene expression among the subgenomes of Brassica rapa
    • Cheng, F., Wu, J., Fang, L., Sun, S.L., Liu, B., Lin, K., Bonnema, G., and Wang, X.W. (2012). Biased gene fractionation and dominant gene expression among the subgenomes of Brassica rapa. PLoS ONE 7: e36442.
    • (2012) PLoS ONE , vol.7
    • Cheng, F.1    Wu, J.2    Fang, L.3    Sun, S.L.4    Liu, B.5    Lin, K.6    Bonnema, G.7    Wang, X.W.8
  • 17
    • 33645027873 scopus 로고    scopus 로고
    • Use of wild relatives to improve salt tolerance in wheat
    • Colmer, T.D., Flowers, T.J., and Munns, R. (2006). Use of wild relatives to improve salt tolerance in wheat. J. Exp. Bot. 57: 1059-1078.
    • (2006) J. Exp. Bot. , vol.57 , pp. 1059-1078
    • Colmer, T.D.1    Flowers, T.J.2    Munns, R.3
  • 18
    • 33644681986 scopus 로고    scopus 로고
    • The advantages and disadvantages of being polyploid
    • Comai, L. (2005). The advantages and disadvantages of being polyploid. Nat. Rev. Genet. 6: 836-846.
    • (2005) Nat. Rev. Genet. , vol.6 , pp. 836-846
    • Comai, L.1
  • 19
    • 0033789617 scopus 로고    scopus 로고
    • Phenotypic instability and rapid gene silencing in newly formed arabidopsis allotetraploids
    • Comai, L., Tyagi, A.P., Winter, K., Holmes-Davis, R., Reynolds, S.H., Stevens, Y., and Byers, B. (2000). Phenotypic instability and rapid gene silencing in newly formed arabidopsis allotetraploids. Plant Cell 12: 1551-1568.
    • (2000) Plant Cell , vol.12 , pp. 1551-1568
    • Comai, L.1    Tyagi, A.P.2    Winter, K.3    Holmes-Davis, R.4    Reynolds, S.H.5    Stevens, Y.6    Byers, B.7
  • 22
    • 84869994083 scopus 로고    scopus 로고
    • A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice
    • Du, H., Wu, N., Fu, J., Wang, S., Li, X., Xiao, J., and Xiong, L. (2012). A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice. J. Exp. Bot. 63: 6467-6480.
    • (2012) J. Exp. Bot. , vol.63 , pp. 6467-6480
    • Du, H.1    Wu, N.2    Fu, J.3    Wang, S.4    Li, X.5    Xiao, J.6    Xiong, L.7
  • 23
    • 34347399464 scopus 로고    scopus 로고
    • Genome plasticity a key factor in the success of polyploid wheat under domestication
    • Dubcovsky, J., and Dvorak, J. (2007). Genome plasticity a key factor in the success of polyploid wheat under domestication. Science 316: 1862-1866.
    • (2007) Science , vol.316 , pp. 1862-1866
    • Dubcovsky, J.1    Dvorak, J.2
  • 24
    • 84865772155 scopus 로고    scopus 로고
    • Genomic asymmetry in allopolyploid plants: Wheat as a model
    • Feldman, M., Levy, A.A., Fahima, T., and Korol, A. (2012). Genomic asymmetry in allopolyploid plants: wheat as a model. J. Exp. Bot. 63: 5045-5059.
    • (2012) J. Exp. Bot. , vol.63 , pp. 5045-5059
    • Feldman, M.1    Levy, A.A.2    Fahima, T.3    Korol, A.4
  • 25
    • 0036250001 scopus 로고    scopus 로고
    • Plant transposable elements: Where genetics meets genomics
    • Feschotte, C., Jiang, N., and Wessler, S.R. (2002). Plant transposable elements: where genetics meets genomics. Nat. Rev. Genet. 3: 329-341.
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 329-341
    • Feschotte, C.1    Jiang, N.2    Wessler, S.R.3
  • 26
    • 77950931393 scopus 로고    scopus 로고
    • Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation
    • Flagel, L.E., and Wendel, J.F. (2010). Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation. New Phytol. 186: 184-193.
    • (2010) New Phytol. , vol.186 , pp. 184-193
    • Flagel, L.E.1    Wendel, J.F.2
  • 27
    • 84855985318 scopus 로고    scopus 로고
    • Salt and drought stresses induce the aberrant expression of microRNA genes in tobacco
    • Frazier, T.P., Sun, G., Burklew, C.E., and Zhang, B. (2011). Salt and drought stresses induce the aberrant expression of microRNA genes in tobacco. Mol. Biotechnol. 49: 159-165.
    • (2011) Mol. Biotechnol. , vol.49 , pp. 159-165
    • Frazier, T.P.1    Sun, G.2    Burklew, C.E.3    Zhang, B.4
  • 28
    • 77950809943 scopus 로고    scopus 로고
    • Monovalent and unpoised status of most genes in undifferentiated cell-enriched Drosophila testis
    • Gan, Q., Schones, D.E., Ho Eun, S., Wei, G., Cui, K., Zhao, K., and Chen, X. (2010). Monovalent and unpoised status of most genes in undifferentiated cell-enriched Drosophila testis. Genome Biol. 11: R42.
    • (2010) Genome Biol. , vol.11
    • Gan, Q.1    Schones, D.E.2    Ho Eun, S.3    Wei, G.4    Cui, K.5    Zhao, K.6    Chen, X.7
  • 29
    • 84863183645 scopus 로고    scopus 로고
    • A highly conserved, small LTR retrotransposon that preferentially targets genes in grass genomes
    • Gao, D.Y., Chen, J.F., Chen, M.S., Meyers, B.C., and Jackson, S. (2012). A highly conserved, small LTR retrotransposon that preferentially targets genes in grass genomes. PLoS ONE 7: e32010.
    • (2012) PLoS ONE , vol.7
    • Gao, D.Y.1    Chen, J.F.2    Chen, M.S.3    Meyers, B.C.4    Jackson, S.5
  • 32
    • 0000923953 scopus 로고
    • Progressive eterosis in autotetraploid alfalfa-studies using 2 types of inbreds
    • Groose, R.W., Talbert, L.E., Kojis, W.P., and Bingham, E.T. (1989). Progressive eterosis in autotetraploid alfalfa-studies using 2 types of inbreds. Crop Sci. 29: 1173-1177.
    • (1989) Crop Sci. , vol.29 , pp. 1173-1177
    • Groose, R.W.1    Talbert, L.E.2    Kojis, W.P.3    Bingham, E.T.4
  • 34
    • 60549090058 scopus 로고    scopus 로고
    • Duplicate genes increase expression diversity in closely related species and allopolyploids
    • Ha, M., Kim, E.D., and Chen, Z.J. (2009a). Duplicate genes increase expression diversity in closely related species and allopolyploids. Proc. Natl. Acad. Sci. USA 106: 2295-2300.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 2295-2300
    • Ha, M.1    Kim, E.D.2    Chen, Z.J.3
  • 36
    • 84873027817 scopus 로고    scopus 로고
    • Comparison of class 2 transposable elements at superfamily resolution reveals conserved and distinct features in cereal grass genomes
    • Han, Y.J., Qin, S.S., and Wessler, S.R. (2013). Comparison of class 2 transposable elements at superfamily resolution reveals conserved and distinct features in cereal grass genomes. BMC Genomics 14: 71.
    • (2013) BMC Genomics , vol.14 , pp. 71
    • Han, Y.J.1    Qin, S.S.2    Wessler, S.R.3
  • 37
    • 84883753883 scopus 로고    scopus 로고
    • Production of hexaploid triticale by a synthetic hexaploid wheat-rye hybrid method
    • Hao, M., Luo, J., Zhang, L., Yuan, Z., Yang, Y., Wu, M., Chen, W., Zheng, Y., Zhang, H., and Liu, D. (2013). Production of hexaploid triticale by a synthetic hexaploid wheat-rye hybrid method. Euphytica 193: 347-357.
    • (2013) Euphytica , vol.193 , pp. 347-357
    • Hao, M.1    Luo, J.2    Zhang, L.3    Yuan, Z.4    Yang, Y.5    Wu, M.6    Chen, W.7    Zheng, Y.8    Zhang, H.9    Liu, D.10
  • 39
    • 0037560724 scopus 로고    scopus 로고
    • Allopolyploidy alters gene expression in the highly stable hexaploid wheat
    • He, P., Friebe, B.R., Gill, B.S., and Zhou, J.M. (2003). Allopolyploidy alters gene expression in the highly stable hexaploid wheat. Plant Mol. Biol. 52: 401-414.
    • (2003) Plant Mol. Biol. , vol.52 , pp. 401-414
    • He, P.1    Friebe, B.R.2    Gill, B.S.3    Zhou, J.M.4
  • 40
    • 0037062465 scopus 로고    scopus 로고
    • Genes encoding plastid acetyl-CoA carboxylase and 3-phosphoglycerate kinase of the Triticum/Aegilops complex and the evolutionary history of polyploid wheat
    • Huang, S.X., Sirikhachornkit, A., Su, X., Faris, J., Gill, B.S., Haselkorn, R., and Gornicki, P. (2002). Genes encoding plastid acetyl-CoA carboxylase and 3-phosphoglycerate kinase of the Triticum/Aegilops complex and the evolutionary history of polyploid wheat. Proc. Natl. Acad. Sci. USA 99: 8133-8138.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 8133-8138
    • Huang, S.X.1    Sirikhachornkit, A.2    Su, X.3    Faris, J.4    Gill, B.S.5    Haselkorn, R.6    Gornicki, P.7
  • 41
    • 77951171017 scopus 로고    scopus 로고
    • Genomic and expression plasticity of polyploidy
    • Jackson, S., and Chen, Z.J. (2010). Genomic and expression plasticity of polyploidy. Curr. Opin. Plant Biol. 13: 153-159.
    • (2010) Curr. Opin. Plant Biol. , vol.13 , pp. 153-159
    • Jackson, S.1    Chen, Z.J.2
  • 42
    • 29544443802 scopus 로고    scopus 로고
    • The auxinresponsive GH3 gene family in rice (Oryza sativa)
    • Jain, M., Kaur, N., Tyagi, A.K., and Khurana, J.P. (2006). The auxinresponsive GH3 gene family in rice (Oryza sativa). Funct. Integr. Genomics 6: 36-46.
    • (2006) Funct. Integr. Genomics , vol.6 , pp. 36-46
    • Jain, M.1    Kaur, N.2    Tyagi, A.K.3    Khurana, J.P.4
  • 43
    • 84875898037 scopus 로고    scopus 로고
    • Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    • International Wheat Genome Sequencing Consortium
    • Jia, J., et al.; International Wheat Genome Sequencing Consortium (2013). Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature 496: 91-95.
    • (2013) Nature , vol.496 , pp. 91-95
    • Jia, J.1
  • 44
    • 0037226595 scopus 로고    scopus 로고
    • Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat
    • Kashkush, K., Feldman, M., and Levy, A.A. (2003). Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat. Nat. Genet. 33: 102-106.
    • (2003) Nat. Genet. , vol.33 , pp. 102-106
    • Kashkush, K.1    Feldman, M.2    Levy, A.A.3
  • 47
    • 84856594225 scopus 로고    scopus 로고
    • Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants
    • Khraiwesh, B., Zhu, J.K., and Zhu, J. (2012). Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants. Biochim. Biophys. Acta 1819: 137-148.
    • (2012) Biochim. Biophys. Acta , vol.1819 , pp. 137-148
    • Khraiwesh, B.1    Zhu, J.K.2    Zhu, J.3
  • 48
    • 0001018538 scopus 로고
    • Discovery of DD analyser, one of the ancestors of T. vulgare
    • Kihara, H. (1944). Discovery of DD analyser, one of the ancestors of T. vulgare. Agric. Hortic. (Tokyo) 19: 889-890.
    • (1944) Agric. Hortic. (Tokyo) , vol.19 , pp. 889-890
    • Kihara, H.1
  • 49
    • 84876996918 scopus 로고    scopus 로고
    • TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
    • Kim, D., Pertea, G., Trapnell, C., Pimentel, H., Kelley, R., and Salzberg, S.L. (2013). TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 14: R36.
    • (2013) Genome Biol. , vol.14
    • Kim, D.1    Pertea, G.2    Trapnell, C.3    Pimentel, H.4    Kelley, R.5    Salzberg, S.L.6
  • 50
    • 78651293534 scopus 로고    scopus 로고
    • miRBase: Integrating microRNA annotation and deep-sequencing data
    • Kozomara, A., and Griffiths-Jones, S. (2011). miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 39: D152-D157.
    • (2011) Nucleic Acids Res. , vol.39
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 51
    • 42549129942 scopus 로고    scopus 로고
    • Genomic plasticity and the diversity of polyploid plants
    • Leitch, A.R., and Leitch, I.J. (2008). Genomic plasticity and the diversity of polyploid plants. Science 320: 481-483.
    • (2008) Science , vol.320 , pp. 481-483
    • Leitch, A.R.1    Leitch, I.J.2
  • 53
    • 75649124547 scopus 로고    scopus 로고
    • De novo assembly of human genomes with massively parallel short read sequencing
    • Li, R., et al. (2010). De novo assembly of human genomes with massively parallel short read sequencing. Genome Res. 20: 265-272.
    • (2010) Genome Res. , vol.20 , pp. 265-272
    • Li, R.1
  • 54
    • 84875886528 scopus 로고    scopus 로고
    • Draft genome of the wheat A-genome progenitor Triticum urartu
    • Ling, H.-Q., et al. (2013). Draft genome of the wheat A-genome progenitor Triticum urartu. Nature 496: 87-90.
    • (2013) Nature , vol.496 , pp. 87-90
    • Ling, H.-Q.1
  • 55
    • 42049095870 scopus 로고    scopus 로고
    • MicroRNA expression profiling using microarrays
    • Liu, C.G., Calin, G.A., Volinia, S., and Croce, C.M. (2008). MicroRNA expression profiling using microarrays. Nat. Protoc. 3: 563-578.
    • (2008) Nat. Protoc. , vol.3 , pp. 563-578
    • Liu, C.G.1    Calin, G.A.2    Volinia, S.3    Croce, C.M.4
  • 56
    • 84859464802 scopus 로고    scopus 로고
    • Maternal siRNAs as regulators of parental genome imbalance and gene expression in endosperm of Arabidopsis seeds
    • Lu, J., Zhang, C., Baulcombe, D.C., and Chen, Z.J. (2012). Maternal siRNAs as regulators of parental genome imbalance and gene expression in endosperm of Arabidopsis seeds. Proc. Natl. Acad. Sci. USA 109: 5529-5534.
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 5529-5534
    • Lu, J.1    Zhang, C.2    Baulcombe, D.C.3    Chen, Z.J.4
  • 57
    • 77952884377 scopus 로고    scopus 로고
    • Profiling of cold-stress-responsive miRNAs in rice by microarrays
    • Lv, D.K., Bai, X., Li, Y., Ding, X.D., Ge, Y., Cai, H., Ji, W., Wu, N., and Zhu, Y.M. (2010). Profiling of cold-stress-responsive miRNAs in rice by microarrays. Gene 459: 39-47.
    • (2010) Gene , vol.459 , pp. 39-47
    • Lv, D.K.1    Bai, X.2    Li, Y.3    Ding, X.D.4    Ge, Y.5    Cai, H.6    Ji, W.7    Wu, N.8    Zhu, Y.M.9
  • 58
    • 84872597340 scopus 로고    scopus 로고
    • Polyploidy and its effect on evolutionary success: Old questions revisited with new tools
    • Madlung, A. (2013). Polyploidy and its effect on evolutionary success: old questions revisited with new tools. Heredity (Edinb.) 110: 99-104.
    • (2013) Heredity (Edinb.) , vol.110 , pp. 99-104
    • Madlung, A.1
  • 59
    • 79956129888 scopus 로고    scopus 로고
    • Evolution of polyploid triticum wheats under cultivation: The role of domestication, natural hybridization and allopolyploid speciation in their diversification
    • Matsuoka, Y. (2011). Evolution of polyploid triticum wheats under cultivation: the role of domestication, natural hybridization and allopolyploid speciation in their diversification. Plant Cell Physiol. 52: 750-764.
    • (2011) Plant Cell Physiol. , vol.52 , pp. 750-764
    • Matsuoka, Y.1
  • 61
    • 77957217584 scopus 로고
    • The origin of Triticum spelta and its free-threshing hexaploid relatives
    • McFadden, E.S., and Sears, E.R. (1946). The origin of Triticum spelta and its free-threshing hexaploid relatives. J. Hered. 37: 81-89, 107.
    • (1946) J. Hered. , vol.37
    • McFadden, E.S.1    Sears, E.R.2
  • 63
    • 77950938640 scopus 로고    scopus 로고
    • Newly synthesized wheat allohexaploids display progenitor-dependent meiotic stability and aneuploidy but structural genomic additivity
    • Mestiri, I., Chagué, V., Tanguy, A.M., Huneau, C., Huteau, V., Belcram, H., Coriton, O., Chalhoub, B., and Jahier, J. (2010). Newly synthesized wheat allohexaploids display progenitor-dependent meiotic stability and aneuploidy but structural genomic additivity. New Phytol. 186: 86-101.
    • (2010) New Phytol. , vol.186 , pp. 86-101
    • Mestiri, I.1    Chagué, V.2    Tanguy, A.M.3    Huneau, C.4    Huteau, V.5    Belcram, H.6    Coriton, O.7    Chalhoub, B.8    Jahier, J.9
  • 65
    • 84862777313 scopus 로고    scopus 로고
    • Big roles for small RNAs in polyploidy, hybrid vigor, and hybrid incompatibility
    • Ng, D.W., Lu, J., and Chen, Z.J. (2012). Big roles for small RNAs in polyploidy, hybrid vigor, and hybrid incompatibility. Curr. Opin. Plant Biol. 15: 154-161.
    • (2012) Curr. Opin. Plant Biol. , vol.15 , pp. 154-161
    • Ng, D.W.1    Lu, J.2    Chen, Z.J.3
  • 66
    • 79959845558 scopus 로고    scopus 로고
    • cis-and trans-regulation of miR163 and target genes confers natural variation of secondary metabolites in two Arabidopsis species and their allopolyploids
    • Ng, D.W., Zhang, C., Miller, M., Palmer, G., Whiteley, M., Tholl, D., and Chen, Z.J. (2011). cis-and trans-regulation of miR163 and target genes confers natural variation of secondary metabolites in two Arabidopsis species and their allopolyploids. Plant Cell 23: 1729-1740.
    • (2011) Plant Cell , vol.23 , pp. 1729-1740
    • Ng, D.W.1    Zhang, C.2    Miller, M.3    Palmer, G.4    Whiteley, M.5    Tholl, D.6    Chen, Z.J.7
  • 67
    • 58249105076 scopus 로고    scopus 로고
    • Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids
    • Ni, Z., Kim, E.D., Ha, M., Lackey, E., Liu, J., Zhang, Y., Sun, Q., and Chen, Z.J. (2009). Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids. Nature 457: 327-331.
    • (2009) Nature , vol.457 , pp. 327-331
    • Ni, Z.1    Kim, E.D.2    Ha, M.3    Lackey, E.4    Liu, J.5    Zhang, Y.6    Sun, Q.7    Chen, Z.J.8
  • 68
    • 84890316359 scopus 로고    scopus 로고
    • Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo-and neoduplicated subgenomes
    • Pont, C., et al. (2013). Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo-and neoduplicated subgenomes. Plant J. 76: 1030-1044.
    • (2013) Plant J. , vol.76 , pp. 1030-1044
    • Pont, C.1
  • 69
    • 62549107556 scopus 로고    scopus 로고
    • Nonadditive expression of homoeologous genes is established upon polyploidization in hexaploid wheat
    • Pumphrey, M., Bai, J., Laudencia-Chingcuanco, D., Anderson, O., and Gill, B.S. (2009). Nonadditive expression of homoeologous genes is established upon polyploidization in hexaploid wheat. Genetics 181: 1147-1157.
    • (2009) Genetics , vol.181 , pp. 1147-1157
    • Pumphrey, M.1    Bai, J.2    Laudencia-Chingcuanco, D.3    Anderson, O.4    Gill, B.S.5
  • 70
    • 0028927730 scopus 로고
    • The CONSTANS gene of Arabidopsis promotes flowering and encodes a protein showing similarities to zinc finger transcription factors
    • Putterill, J., Robson, F., Lee, K., Simon, R., and Coupland, G. (1995). The CONSTANS gene of Arabidopsis promotes flowering and encodes a protein showing similarities to zinc finger transcription factors. Cell 80: 847-857.
    • (1995) Cell , vol.80 , pp. 847-857
    • Putterill, J.1    Robson, F.2    Lee, K.3    Simon, R.4    Coupland, G.5
  • 71
    • 84862820384 scopus 로고    scopus 로고
    • Global transgenerational gene expression dynamics in two newly synthesized allohexaploid wheat (Triticum aestivum) lines
    • Qi, B., Huang, W., Zhu, B., Zhong, X., Guo, J., Zhao, N., Xu, C., Zhang, H., Pang, J., Han, F., and Liu, B. (2012). Global transgenerational gene expression dynamics in two newly synthesized allohexaploid wheat (Triticum aestivum) lines. BMC Biol. 10: 3.
    • (2012) BMC Biol. , vol.10 , pp. 3
    • Qi, B.1    Huang, W.2    Zhu, B.3    Zhong, X.4    Guo, J.5    Zhao, N.6    Xu, C.7    Zhang, H.8    Pang, J.9    Han, F.10    Liu, B.11
  • 72
    • 66149174929 scopus 로고    scopus 로고
    • Genomic expression dominance in allopolyploids
    • Rapp, R.A., Udall, J.A., and Wendel, J.F. (2009). Genomic expression dominance in allopolyploids. BMC Biol. 7: 18.
    • (2009) BMC Biol. , vol.7 , pp. 18
    • Rapp, R.A.1    Udall, J.A.2    Wendel, J.F.3
  • 73
    • 75849147404 scopus 로고    scopus 로고
    • Gene expression analysis at the intersection of ploidy and hybridity in maize
    • Riddle, N.C., Jiang, H., An, L., Doerge, R.W., and Birchler, J.A. (2010). Gene expression analysis at the intersection of ploidy and hybridity in maize. Theor. Appl. Genet. 120: 341-353.
    • (2010) Theor. Appl. Genet. , vol.120 , pp. 341-353
    • Riddle, N.C.1    Jiang, H.2    An, L.3    Doerge, R.W.4    Birchler, J.A.5
  • 74
    • 0006180620 scopus 로고    scopus 로고
    • The late elongated hypocotyl mutation of Arabidopsis disrupts circadian rhythms and the photoperiodic control of flowering
    • Schaffer, R., Ramsay, N., Samach, A., Corden, S., Putterill, J., Carré, I.A., and Coupland, G. (1998). The late elongated hypocotyl mutation of Arabidopsis disrupts circadian rhythms and the photoperiodic control of flowering. Cell 93: 1219-1229.
    • (1998) Cell , vol.93 , pp. 1219-1229
    • Schaffer, R.1    Ramsay, N.2    Samach, A.3    Corden, S.4    Putterill, J.5    Carré, I.A.6    Coupland, G.7
  • 75
    • 79952744855 scopus 로고    scopus 로고
    • Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
    • Schnable, J.C., Springer, N.M., and Freeling, M. (2011). Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss. Proc. Natl. Acad. Sci. USA 108: 4069-4074.
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 4069-4074
    • Schnable, J.C.1    Springer, N.M.2    Freeling, M.3
  • 77
    • 58149232448 scopus 로고    scopus 로고
    • Biolistics transformation of wheat
    • Sparks, C.A., and Jones, H.D. (2009). Biolistics transformation of wheat. Methods Mol. Biol. 478: 71-92.
    • (2009) Methods Mol. Biol. , vol.478 , pp. 71-92
    • Sparks, C.A.1    Jones, H.D.2
  • 78
  • 79
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • Trapnell, C., Pachter, L., and Salzberg, S.L. (2009). TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 80
    • 33645528966 scopus 로고    scopus 로고
    • Post-transcriptional small RNA pathways in plants: Mechanisms and regulations
    • Vaucheret, H. (2006). Post-transcriptional small RNA pathways in plants: mechanisms and regulations. Genes Dev. 20: 759-771.
    • (2006) Genes Dev. , vol.20 , pp. 759-771
    • Vaucheret, H.1
  • 83
    • 75249095274 scopus 로고    scopus 로고
    • DEGseq: An R package for identifying differentially expressed genes from RNA-seq data
    • Wang, L., Feng, Z., Wang, X., Wang, X., and Zhang, X. (2010). DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. Bioinformatics 26: 136-138.
    • (2010) Bioinformatics , vol.26 , pp. 136-138
    • Wang, L.1    Feng, Z.2    Wang, X.3    Wang, X.4    Zhang, X.5
  • 84
    • 84865074382 scopus 로고    scopus 로고
    • RSeQC: Quality control of RNA-seq experiments
    • Wang, L., Wang, S., and Li, W. (2012). RSeQC: quality control of RNA-seq experiments. Bioinformatics 28: 2184-2185.
    • (2012) Bioinformatics , vol.28 , pp. 2184-2185
    • Wang, L.1    Wang, S.2    Li, W.3
  • 85
    • 84896704687 scopus 로고    scopus 로고
    • Polyploids as a 'model system' for the study of heterosis
    • Washburn, J.D., and Birchler, J.A. (2014). Polyploids as a 'model system' for the study of heterosis. Plant Reprod. 27: 1-5.
    • (2014) Plant Reprod. , vol.27 , pp. 1-5
    • Washburn, J.D.1    Birchler, J.A.2
  • 86
    • 70350029271 scopus 로고    scopus 로고
    • Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv
    • Wei, B., Cai, T., Zhang, R., Li, A., Huo, N., Li, S., Gu, Y.Q., Vogel, J., Jia, J., Qi, Y., and Mao, L. (2009). Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv. Funct. Integr. Genomics 9: 499-511.
    • (2009) Funct. Integr. Genomics , vol.9 , pp. 499-511
    • Wei, B.1    Cai, T.2    Zhang, R.3    Li, A.4    Huo, N.5    Li, S.6    Gu, Y.Q.7    Vogel, J.8    Jia, J.9    Qi, Y.10    Mao, L.11
  • 89
    • 84864491712 scopus 로고    scopus 로고
    • PsRobot: A web-based plant small RNA meta-analysis toolbox
    • Wu, H.J., Ma, Y.K., Chen, T., Wang, M., and Wang, X.J. (2012). PsRobot: a web-based plant small RNA meta-analysis toolbox. Nucleic Acids Res. 40: W22-W28.
    • (2012) Nucleic Acids Res. , vol.40
    • Wu, H.J.1    Ma, Y.K.2    Chen, T.3    Wang, M.4    Wang, X.J.5
  • 91
    • 33645814822 scopus 로고    scopus 로고
    • 'Evidence of an auxin signal pathway, microRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells'
    • Yang, J.H., Han, S.J., Yoon, E.K., and Lee, W.S. (2006). 'Evidence of an auxin signal pathway, microRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells'. Nucleic Acids Res. 34: 1892-1899.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 1892-1899
    • Yang, J.H.1    Han, S.J.2    Yoon, E.K.3    Lee, W.S.4
  • 92
    • 70349282119 scopus 로고    scopus 로고
    • Synthetic hexaploid wheat and its utilization for wheat genetic improvement in China
    • Yang, W., Liu, D., Li, J., Zhang, L., Wei, H., Hu, X., Zheng, Y., He, Z., and Zou, Y. (2009). Synthetic hexaploid wheat and its utilization for wheat genetic improvement in China. J. Genet. Genomics 36: 539-546.
    • (2009) J. Genet. Genomics , vol.36 , pp. 539-546
    • Yang, W.1    Liu, D.2    Li, J.3    Zhang, L.4    Wei, H.5    Hu, X.6    Zheng, Y.7    He, Z.8    Zou, Y.9
  • 94
    • 84872611513 scopus 로고    scopus 로고
    • Homoeolog expression bias and expression level dominance in allopolyploid cotton
    • Yoo, M.J., Szadkowski, E., and Wendel, J.F. (2013). Homoeolog expression bias and expression level dominance in allopolyploid cotton. Heredity (Edinb.) 110: 171-180.
    • (2013) Heredity (Edinb.) , vol.110 , pp. 171-180
    • Yoo, M.J.1    Szadkowski, E.2    Wendel, J.F.3
  • 95
    • 84874493629 scopus 로고    scopus 로고
    • Persistent whole-chromosome aneuploidy is generally associated with nascent allohexaploid wheat
    • Zhang, H., et al. (2013a). Persistent whole-chromosome aneuploidy is generally associated with nascent allohexaploid wheat. Proc. Natl. Acad. Sci. USA 110: 3447-3452.
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. 3447-3452
    • Zhang, H.1
  • 97
    • 70350438585 scopus 로고    scopus 로고
    • Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
    • Zhang, J., Xu, Y., Huan, Q., and Chong, K. (2009). Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response. BMC Genomics 10: 449.
    • (2009) BMC Genomics , vol.10 , pp. 449
    • Zhang, J.1    Xu, Y.2    Huan, Q.3    Chong, K.4
  • 98
    • 34547457542 scopus 로고    scopus 로고
    • Meiotic restriction in emmer wheat is controlled by one or more nuclear genes that continue to function in derived lines
    • Zhang, L., Yang, Y., Zheng, Y., and Liu, D. (2007). Meiotic restriction in emmer wheat is controlled by one or more nuclear genes that continue to function in derived lines. Sex. Plant Reprod. 20: 159-166.
    • (2007) Sex. Plant Reprod. , vol.20 , pp. 159-166
    • Zhang, L.1    Yang, Y.2    Zheng, Y.3    Liu, D.4
  • 99
    • 77950460285 scopus 로고    scopus 로고
    • Frequent occurrence of unreduced gametes in Triticum turgidum-Aegilops tauschii hybrids
    • Zhang, L.Q., Liu, D.C., Zheng, Y.L., Yan, Z.H., Dai, S.F., Li, Y.F., Jiang, Q., Ye, Y.Q., and Yen, Y. (2010). Frequent occurrence of unreduced gametes in Triticum turgidum-Aegilops tauschii hybrids. Euphytica 172: 285-294.
    • (2010) Euphytica , vol.172 , pp. 285-294
    • Zhang, L.Q.1    Liu, D.C.2    Zheng, Y.L.3    Yan, Z.H.4    Dai, S.F.5    Li, Y.F.6    Jiang, Q.7    Ye, Y.Q.8    Yen, Y.9
  • 100
    • 80052000625 scopus 로고    scopus 로고
    • Chromosomal and genome-wide molecular changes associated with initial stages of allohexaploidization in wheat can be transit and incidental
    • Zhao, N., Xu, L., Zhu, B., Li, M., Zhang, H., Qi, B., Xu, C., Han, F., and Liu, B. (2011a). Chromosomal and genome-wide molecular changes associated with initial stages of allohexaploidization in wheat can be transit and incidental. Genome 54: 692-699.
    • (2011) Genome , vol.54 , pp. 692-699
    • Zhao, N.1    Xu, L.2    Zhu, B.3    Li, M.4    Zhang, H.5    Qi, B.6    Xu, C.7    Han, F.8    Liu, B.9
  • 101
    • 79960125436 scopus 로고    scopus 로고
    • Extensive and heritable epigenetic remodeling and genetic stability accompany allohexaploidization of wheat
    • Zhao, N., Zhu, B., Li, M., Wang, L., Xu, L., Zhang, H., Zheng, S., Qi, B., Han, F., and Liu, B. (2011b). Extensive and heritable epigenetic remodeling and genetic stability accompany allohexaploidization of wheat. Genetics 188: 499-510.
    • (2011) Genetics , vol.188 , pp. 499-510
    • Zhao, N.1    Zhu, B.2    Li, M.3    Wang, L.4    Xu, L.5    Zhang, H.6    Zheng, S.7    Qi, B.8    Han, F.9    Liu, B.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.