-
2
-
-
72849144434
-
Sequencing technologies-the next generation
-
Metzker ML. Sequencing technologies-the next generation. Nat Rev Genet 2010;11:31-46.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
3
-
-
53649088131
-
Applications of next-generation sequencing technologies in functional genomics
-
Morozova O, Marra MA. Applications of next-generation sequencing technologies in functional genomics. Genomics 2008;92:255-64.
-
(2008)
Genomics
, vol.92
, pp. 255-264
-
-
Morozova, O.1
Marra, M.A.2
-
4
-
-
71949131301
-
Plant genome sequencing: applications for crop improvement
-
Edwards D, Batley J. Plant genome sequencing: applications for crop improvement. Plant Biotechnol J 2010; 8:2-9.
-
(2010)
Plant Biotechnol J
, vol.8
, pp. 2-9
-
-
Edwards, D.1
Batley, J.2
-
5
-
-
34347399464
-
Genome plasticity a key factor in the success of polyploid wheat under domestication
-
Dubcovsky J, Dvorak J. Genome plasticity a key factor in the success of polyploid wheat under domestication. Science 2007;316:1862-6.
-
(2007)
Science
, vol.316
, pp. 1862-1866
-
-
Dubcovsky, J.1
Dvorak, J.2
-
6
-
-
3042848862
-
Demarcating the gene-rich regions of the wheat genome
-
Erayman M, Sandhu D, Sidhu D, et al. Demarcating the gene-rich regions of the wheat genome. Nucleic Acids Res 2004;32:3546-65.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 3546-3565
-
-
Erayman, M.1
Sandhu, D.2
Sidhu, D.3
-
7
-
-
84870260198
-
Analysis of the bread wheat genome using whole-genome shotgun sequencing
-
Brenchley R, Spannagl M, Pfeifer M, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature 2012;491:705-10.
-
(2012)
Nature
, vol.491
, pp. 705-710
-
-
Brenchley, R.1
Spannagl, M.2
Pfeifer, M.3
-
8
-
-
84875886528
-
Draft genome of the wheat A-genome progenitor Triticum urartu
-
Ling HQ, Zhao S, Liu D, et al. Draft genome of the wheat A-genome progenitor Triticum urartu. Nature 2013; 496:87-90.
-
(2013)
Nature
, vol.496
, pp. 87-90
-
-
Ling, H.Q.1
Zhao, S.2
Liu, D.3
-
9
-
-
84875898037
-
Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
-
Jia J, Zhao S, Kong X, et al. Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature 2013;496:91-5.
-
(2013)
Nature
, vol.496
, pp. 91-95
-
-
Jia, J.1
Zhao, S.2
Kong, X.3
-
10
-
-
0036929339
-
Flow karyotyping and chromosome sorting in bread wheat (Triticum aestivum L.)
-
Kubalakova M, Vrana J, Cihalikova J, et al. Flow karyotyping and chromosome sorting in bread wheat (Triticum aestivum L.). TheorAppl Genet 2002;104:1362-72.
-
(2002)
TheorAppl Genet
, vol.104
, pp. 1362-1372
-
-
Kubalakova, M.1
Vrana, J.2
Cihalikova, J.3
-
11
-
-
84865577236
-
Flow cytometric chromosome sorting in plants: the next generation
-
Vrana J, Simkova H, Kubalakova M, et al. Flow cytometric chromosome sorting in plants: the next generation. Methods 2012;57:331-7.
-
(2012)
Methods
, vol.57
, pp. 331-337
-
-
Vrana, J.1
Simkova, H.2
Kubalakova, M.3
-
12
-
-
0034528980
-
Flow sorting of mitotic chromosomes in common wheat (Triticum aestivum L.)
-
Vrana J, Kubalakova M, Simkova H, et al. Flow sorting of mitotic chromosomes in common wheat (Triticum aestivum L.). Genetics 2000;156:2033-41.
-
(2000)
Genetics
, vol.156
, pp. 2033-2041
-
-
Vrana, J.1
Kubalakova, M.2
Simkova, H.3
-
13
-
-
84864920004
-
Comparison of next-generation sequencing systems
-
Liu L, Li Y, Li S, et al. Comparison of next-generation sequencing systems. J Biomed Biotechnol 2012;2012:251364.
-
(2012)
J Biomed Biotechnol
, vol.2012
-
-
Liu, L.1
Li, Y.2
Li, S.3
-
14
-
-
70350029271
-
Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv
-
Wei B, Cai T, Zhang R, et al. Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv. Funct Integr Genomics 2009;9:499-511.
-
(2009)
Funct Integr Genomics
, vol.9
, pp. 499-511
-
-
Wei, B.1
Cai, T.2
Zhang, R.3
-
15
-
-
57749199958
-
Differential expression of miRNAs in response to salt stress in maize roots
-
Ding D, Zhang L, Wang H, et al. Differential expression of miRNAs in response to salt stress in maize roots. Ann Bot 2009;103:29-38.
-
(2009)
Ann Bot
, vol.103
, pp. 29-38
-
-
Ding, D.1
Zhang, L.2
Wang, H.3
-
16
-
-
84872660687
-
Genome-wide identification and analysis of microRNA responding to long-term waterlogging in crown roots of maize seedlings
-
Zhai L, Liu Z, Zou X, et al. Genome-wide identification and analysis of microRNA responding to long-term waterlogging in crown roots of maize seedlings. Physiol Plant 2013;147:181-93.
-
(2013)
Physiol Plant
, vol.147
, pp. 181-193
-
-
Zhai, L.1
Liu, Z.2
Zou, X.3
-
17
-
-
84876039714
-
Small RNA and degradome sequencing reveal complex miRNA regulation during cotton somatic embryogenesis
-
Yang X, Wang L, Yuan D, et al. Small RNA and degradome sequencing reveal complex miRNA regulation during cotton somatic embryogenesis. J Exp Bot 2013;64: 1521-36.
-
(2013)
J Exp Bot
, vol.64
, pp. 1521-1536
-
-
Yang, X.1
Wang, L.2
Yuan, D.3
-
18
-
-
79951958731
-
Discovery of barley miRNAs through deep sequencing of short reads
-
Schreiber AW, Shi BJ, Huang CY, et al. Discovery of barley miRNAs through deep sequencing of short reads. BMCGenomics 2011;12:129.
-
(2011)
BMCGenomics
, vol.12
, pp. 129
-
-
Schreiber, A.W.1
Shi, B.J.2
Huang, C.Y.3
-
19
-
-
84860904680
-
Identification of miRNAs in sorghum by using bioinformatics approach
-
Katiyar A, Smita S, Chinnusamy V, et al. Identification of miRNAs in sorghum by using bioinformatics approach. Plant Signal Behav 2012;7:246-59.
-
(2012)
Plant Signal Behav
, vol.7
, pp. 246-259
-
-
Katiyar, A.1
Smita, S.2
Chinnusamy, V.3
-
20
-
-
77958031243
-
Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa
-
Zhou L, Liu Y, Liu Z, et al. Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa. J Exp Bot 2010;61:4157-68.
-
(2010)
J Exp Bot
, vol.61
, pp. 4157-4168
-
-
Zhou, L.1
Liu, Y.2
Liu, Z.3
-
22
-
-
84880754873
-
Unique and conserved microRNAs in wheat chromosome 5D revealed by next-generation sequencing
-
Kurtoglu KY, Kantar M, Lucas SJ, et al. Unique and conserved microRNAs in wheat chromosome 5D revealed by next-generation sequencing. PLoSOne 2013;8:e69801.
-
(2013)
PLoSOne
, vol.8
-
-
Kurtoglu, K.Y.1
Kantar, M.2
Lucas, S.J.3
-
23
-
-
39549115890
-
Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
-
Yao Y, Guo G, Ni Z, et al. Cloning and characterization of microRNAs from wheat (Triticum aestivum L.). Genome Biol 2007;8:R96.
-
(2007)
Genome Biol
, vol.8
, pp. R96
-
-
Yao, Y.1
Guo, G.2
Ni, Z.3
-
24
-
-
0002470457
-
The cumulative effect of allelic variation in LMW and HMW glutenin subunits on dough properties in the progeny of two bread wheats
-
Gupta RB, Singh NK, Shepherd KW. The cumulative effect of allelic variation in LMW and HMW glutenin subunits on dough properties in the progeny of two bread wheats. TheorAppl Genet 1989;77:57-64.
-
(1989)
TheorAppl Genet
, vol.77
, pp. 57-64
-
-
Gupta, R.B.1
Singh, N.K.2
Shepherd, K.W.3
-
25
-
-
73649133268
-
A genome-wide characterization of microRNA genes in maize
-
Zhang L, Chia JM, Kumari S, et al. A genome-wide characterization of microRNA genes in maize. PLoS Genet 2009;5:e1000716.
-
(2009)
PLoS Genet
, vol.5
-
-
Zhang, L.1
Chia, J.M.2
Kumari, S.3
-
26
-
-
79960995874
-
Analysis of the melon (Cucumis melo) small RNAome by high-throughput pyrosequencing
-
Gonzalez-Ibeas D, Blanca J, Donaire L, et al. Analysis of the melon (Cucumis melo) small RNAome by high-throughput pyrosequencing. BMCGenomics 2011;12:393.
-
(2011)
BMCGenomics
, vol.12
, pp. 393
-
-
Gonzalez-Ibeas, D.1
Blanca, J.2
Donaire, L.3
-
27
-
-
79958231735
-
Wheat hybridization and polyploidization results in deregulation of small RNAs
-
Kenan-Eichler M, Leshkowitz D, Tal L, et al. Wheat hybridization and polyploidization results in deregulation of small RNAs. Genetics 2011;188:263-72.
-
(2011)
Genetics
, vol.188
, pp. 263-272
-
-
Kenan-Eichler, M.1
Leshkowitz, D.2
Tal, L.3
-
28
-
-
84872413149
-
Characterization of small RNAs and their target genes in wheat seedlings using sequencing-based approaches
-
Li YF, Zheng Y, Jagadeeswaran G, et al. Characterization of small RNAs and their target genes in wheat seedlings using sequencing-based approaches. Plant Sci 2013;203-204:17-24.
-
(2013)
Plant Sci
, vol.203-204
, pp. 17-24
-
-
Li, Y.F.1
Zheng, Y.2
Jagadeeswaran, G.3
-
29
-
-
84884904146
-
Target of tae-miR408, a chemocyanin-like protein gene (TaCLP1), plays positive roles in wheat response to high-salinity, heavy cupric stress and stripe rust
-
Feng H, Zhang Q, Wang Q, et al. Target of tae-miR408, a chemocyanin-like protein gene (TaCLP1), plays positive roles in wheat response to high-salinity, heavy cupric stress and stripe rust. PlantMol Biol 2013;83:433-43.
-
(2013)
PlantMol Biol
, vol.83
, pp. 433-443
-
-
Feng, H.1
Zhang, Q.2
Wang, Q.3
-
30
-
-
77955498202
-
Diverse set of microRNAs are responsive to powdery mildew infection and heat stress in wheat (Triticum aestivum L.)
-
Xin M, Wang Y, Yao Y, et al. Diverse set of microRNAs are responsive to powdery mildew infection and heat stress in wheat (Triticum aestivum L.). BMC Plant Biol 2010;10:123.
-
(2010)
BMC Plant Biol
, vol.10
, pp. 123
-
-
Xin, M.1
Wang, Y.2
Yao, Y.3
-
31
-
-
79951941475
-
miRNA expression patterns of Triticum dicoccoides in response to shock drought stress
-
Kantar M, Lucas SJ, Budak H. miRNA expression patterns of Triticum dicoccoides in response to shock drought stress. Planta 2011;233:471-84.
-
(2011)
Planta
, vol.233
, pp. 471-484
-
-
Kantar, M.1
Lucas, S.J.2
Budak, H.3
-
32
-
-
84861862996
-
Uncovering small RNAmediated responses to cold stress in a wheat thermosensitive genic male-sterile line by deep sequencing
-
Tang Z, Zhang L, Xu C, et al. Uncovering small RNAmediated responses to cold stress in a wheat thermosensitive genic male-sterile line by deep sequencing. Plant Physiol 2012;159:721-38.
-
(2012)
Plant Physiol
, vol.159
, pp. 721-738
-
-
Tang, Z.1
Zhang, L.2
Xu, C.3
-
33
-
-
84873187914
-
Characterisation of the wheat (Triticum aestivum L.) transcriptome by de novo assembly for the discovery of phosphate starvationresponsive genes: gene expression in Pi-stressed wheat
-
Oono Y, Kobayashi F, Kawahara Y, et al. Characterisation of the wheat (Triticum aestivum L.) transcriptome by de novo assembly for the discovery of phosphate starvationresponsive genes: gene expression in Pi-stressed wheat. BMCGenomics 2013;14:77.
-
(2013)
BMCGenomics
, vol.14
, pp. 77
-
-
Oono, Y.1
Kobayashi, F.2
Kawahara, Y.3
-
34
-
-
84884386975
-
Development-associated microRNAs in grains of wheat (Triticum aestivum L.)
-
Meng F, Liu H, Wang K, et al. Development-associated microRNAs in grains of wheat (Triticum aestivum L.). BMC Plant Biol 2013;13:140.
-
(2013)
BMC Plant Biol
, vol.13
, pp. 140
-
-
Meng, F.1
Liu, H.2
Wang, K.3
-
35
-
-
84876976472
-
Widespread, abundant, and diverse TE-associated siRNAs in developing wheat grain
-
Sun F, Guo W, Du J, et al. Widespread, abundant, and diverse TE-associated siRNAs in developing wheat grain. Gene 2013;522:1-7.
-
(2013)
Gene
, vol.522
, pp. 1-7
-
-
Sun, F.1
Guo, W.2
Du, J.3
-
36
-
-
77955926543
-
Non-coding small RNAs responsive to abiotic stress in wheat (Triticum aestivum L.)
-
Yao Y, Ni Z, Peng H, et al. Non-coding small RNAs responsive to abiotic stress in wheat (Triticum aestivum L.). Funct Integr Genomics 2010;10:187-90.
-
(2010)
Funct Integr Genomics
, vol.10
, pp. 187-190
-
-
Yao, Y.1
Ni, Z.2
Peng, H.3
-
38
-
-
77957223031
-
A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing
-
Cantacessi C, Jex AR, Hall RS, et al. A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing. Nucleic Acids Res 2010;38:e171.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Cantacessi, C.1
Jex, A.R.2
Hall, R.S.3
-
39
-
-
77954442650
-
Identification and characterization of conserved microRNAs and their target genes in wheat (Triticum aestivum)
-
Yin ZJ, Shen FF. Identification and characterization of conserved microRNAs and their target genes in wheat (Triticum aestivum). GenetMol Res 2010;9:1186-96.
-
(2010)
GenetMol Res
, vol.9
, pp. 1186-1196
-
-
Yin, Z.J.1
Shen, F.F.2
-
40
-
-
27844495281
-
Identification and characterization of new plant microRNAs using EST analysis
-
Zhang BH, Pan XP, Wang QL, et al. Identification and characterization of new plant microRNAs using EST analysis. Cell Res 2005;15:336-60.
-
(2005)
Cell Res
, vol.15
, pp. 336-360
-
-
Zhang, B.H.1
Pan, X.P.2
Wang, Q.L.3
-
41
-
-
84860316431
-
MicroRNA regulated defense responses in TriticumaestivumL. during Puccinia graminis f. sp. tritici infection
-
Gupta OP, Permar V, Koundal V, et al. MicroRNA regulated defense responses in TriticumaestivumL. during Puccinia graminis f. sp. tritici infection. Mol Biol Rep 2012;39:817-24.
-
(2012)
Mol Biol Rep
, vol.39
, pp. 817-824
-
-
Gupta, O.P.1
Permar, V.2
Koundal, V.3
-
42
-
-
45849131260
-
Data mining for miRNAs and their targets in the Triticeae
-
Dryanova A, Zakharov A, Gulick PJ. Data mining for miRNAs and their targets in the Triticeae. Genome 2008; 51:433-43.
-
(2008)
Genome
, vol.51
, pp. 433-443
-
-
Dryanova, A.1
Zakharov, A.2
Gulick, P.J.3
-
43
-
-
84864020757
-
Sorting the wheat from the chaff: identifying miRNAs in genomic survey sequences of Triticum aestivum chromosome 1AL
-
Lucas SJ, Budak H. Sorting the wheat from the chaff: identifying miRNAs in genomic survey sequences of Triticum aestivum chromosome 1AL. PLoS One 2012;7:e40859.
-
(2012)
PLoS One
, vol.7
-
-
Lucas, S.J.1
Budak, H.2
-
44
-
-
84877096474
-
Identification of new stress-induced microRNA and their targets in wheat using computational approach
-
Pandey B, Gupta OP, Pandey DM, et al. Identification of new stress-induced microRNA and their targets in wheat using computational approach. Plant Signal Behav 2013;8: e23932.
-
(2013)
Plant Signal Behav
, vol.8
-
-
Pandey, B.1
Gupta, O.P.2
Pandey, D.M.3
-
45
-
-
80054726647
-
First survey of the wheat chromosome 5A composition through a next generation sequencing approach
-
Vitulo N, Albiero A, Forcato C, et al. First survey of the wheat chromosome 5A composition through a next generation sequencing approach. PLoS One 2011;6:e26421.
-
(2011)
PLoS One
, vol.6
-
-
Vitulo, N.1
Albiero, A.2
Forcato, C.3
-
47
-
-
84899074073
-
Next-generation survey sequencing and the molecular organization of wheat chromosome 6B
-
Tanaka T, Kobayashi F, Joshi GP, et al. Next-generation survey sequencing and the molecular organization of wheat chromosome 6B. DNA Res 2014;21:103-14.
-
(2014)
DNA Res
, vol.21
, pp. 103-114
-
-
Tanaka, T.1
Kobayashi, F.2
Joshi, G.P.3
-
48
-
-
70350438585
-
Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
-
Zhang J, Xu Y, Huan Q, et al. Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response. BMCGenomics 2009;10:449.
-
(2009)
BMCGenomics
, vol.10
, pp. 449
-
-
Zhang, J.1
Xu, Y.2
Huan, Q.3
-
49
-
-
79959999559
-
Phosphate starvation signaling in rice
-
Hu B, Chu C. Phosphate starvation signaling in rice. Plant Signal Behav 2011;6:927-9.
-
(2011)
Plant Signal Behav
, vol.6
, pp. 927-929
-
-
Hu, B.1
Chu, C.2
-
50
-
-
84860126087
-
A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs
-
Shivaprasad PV, Chen HM, Patel K, et al. A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs. Plant Cell 2012;24:859-74.
-
(2012)
Plant Cell
, vol.24
, pp. 859-874
-
-
Shivaprasad, P.V.1
Chen, H.M.2
Patel, K.3
-
51
-
-
84865426234
-
Exploration of small non coding RNAs in wheat (Triticum aestivum L.)
-
Yao Y, Sun Q. Exploration of small non coding RNAs in wheat (Triticum aestivum L.). PlantMol Biol 2012;80:67-73.
-
(2012)
PlantMol Biol
, vol.80
, pp. 67-73
-
-
Yao, Y.1
Sun, Q.2
-
52
-
-
84878146319
-
Plant microRNAs and development
-
Wu G. Plant microRNAs and development. J Genet Genomics 2013;40:217-30.
-
(2013)
J Genet Genomics
, vol.40
, pp. 217-230
-
-
Wu, G.1
-
53
-
-
84877807363
-
vsiRNAs derived from the miRNA-generating sites of pri-tae-miR159a based on the BSMV system play positive roles in the wheat response to Puccinia striiformis f. sp. tritici through the regulation of taMyb3 expression
-
Feng H, Zhang Q, Li H, et al. vsiRNAs derived from the miRNA-generating sites of pri-tae-miR159a based on the BSMV system play positive roles in the wheat response to Puccinia striiformis f. sp. tritici through the regulation of taMyb3 expression. Plant Physiol Biochem 2013;68:90-5.
-
(2013)
Plant Physiol Biochem
, vol.68
, pp. 90-95
-
-
Feng, H.1
Zhang, Q.2
Li, H.3
-
54
-
-
84895557335
-
The target gene of taemiR164, a novel NAC transcription factor from the NAM subfamily, negatively regulates resistance of wheat to stripe rust
-
Feng H, Duan X, Zhang Q, et al. The target gene of taemiR164, a novel NAC transcription factor from the NAM subfamily, negatively regulates resistance of wheat to stripe rust. Mol Plant Pathol 2014;15:284-96.
-
(2014)
Mol Plant Pathol
, vol.15
, pp. 284-296
-
-
Feng, H.1
Duan, X.2
Zhang, Q.3
-
55
-
-
84890071599
-
Monodehydroascorbate reductase gene, regulated by the wheat PN-2013 miRNA, contributes to adult wheat plant resistance to stripe rust through ROS metabolism
-
Feng H, Wang X, Zhang Q, et al. Monodehydroascorbate reductase gene, regulated by the wheat PN-2013 miRNA, contributes to adult wheat plant resistance to stripe rust through ROS metabolism. Biochim BiophysActa 2014;1839:1-12.
-
(2014)
Biochim BiophysActa
, vol.1839
, pp. 1-12
-
-
Feng, H.1
Wang, X.2
Zhang, Q.3
-
56
-
-
84855257296
-
Resistance to Wheat streak mosaic virus generated by expression of an artificial polycistronic microRNA in wheat
-
Fahim M, Millar AA, Wood CC, et al. Resistance to Wheat streak mosaic virus generated by expression of an artificial polycistronic microRNA in wheat. Plant Biotechnol J 2012; 10:150-63.
-
(2012)
Plant Biotechnol J
, vol.10
, pp. 150-163
-
-
Fahim, M.1
Millar, A.A.2
Wood, C.C.3
|