Family-wide survey of miR169s and NF-YAs and their expression profiles response to abiotic stress in maize roots

PLoS ONE

Volumn 9, Issue 3, 2014, Pages

  Luan, Mingda ^a,b   Xu, Miaoyun ^b   Lu, Yunming ^c   Zhang, Qiuxue ^b   Zhang, Lan ^b   Zhang, Chunyi ^b   Fan, Yunliu ^b   Lang, Zhihong ^a,b   Wang, Lei ^a,b  

^a SOUTHWEST UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

^b INSTITUTE OF PLANT PROTECTION   (China)

^c Shenzhen Water (Group) Co Ltd   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ABSCISIC ACID; MACROGOL; MESSENGER RNA; MICRORNA; MICRORNA 169; SODIUM CHLORIDE; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR NF YA; UNCLASSIFIED DRUG;

ABIOTIC STRESS; ARTICLE; CHEMICAL STRESS; CONTROLLED STUDY; DOWN REGULATION; DROUGHT STRESS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE LOCUS; GENE TARGETING; GENETIC TRANSCRIPTION; MAIZE; MULTIGENE FAMILY; NF YA GENE; NONHUMAN; PLANT ROOT; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN LOCALIZATION; ROOT GROWTH; SALT STRESS; SEQUENCE ALIGNMENT; AMINO ACID SEQUENCE; BIOLOGICAL MODEL; CHEMISTRY; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PHYSIOLOGICAL STRESS; PLANT GENE; PROTEIN TRANSPORT; RNA INTERFERENCE;

AMINO ACID SEQUENCE; BASE SEQUENCE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; MICRORNAS; MODELS, BIOLOGICAL; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PHENOTYPE; PHYLOGENY; PLANT ROOTS; PROTEIN TRANSPORT; RNA INTERFERENCE; RNA, MESSENGER; SEQUENCE ALIGNMENT; STRESS, PHYSIOLOGICAL; TRANSCRIPTION FACTORS; ZEA MAYS;

EID: 84898490585     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0091369     Document Type: Article

References (33)

1. Ruiz-Ferrer V, Voinnet O (2009) Roles of plant small RNAs in biotic stress responses. Annu Rev Plant Biol 60: 485-510.
2. Shukla LI, Chinnusamy V, Sunkar R (2008) The role of microRNAs and other endogenous small RNAs in plant stress responses. Biochim Biophys Acta 1779: 743-748.
3. Zhao M, Ding H, Zhu JK, Zhang F, Li WX (2011) Involvement of miR169 in the nitrogen-starvation responses in Arabidopsis. New Phytol 190: 906-915.
4. Khraiwesh B, Zhu JK, Zhu J (2012) Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants. Biochim Biophys Acta 1819: 137-148.
5. Kruszka K, Pieczynski M, Windels D, Bielewicz D, Jarmolowski A, et al. (2012) Role of microRNAs and other sRNAs of plants in their changing environments. J Plant Physiol 169: 1664-1672.
6. Sunkar R, Li YF, Jagadeeswaran G (2012) Functions of microRNAs in plant stress responses. Trends Plant Sci 17: 196-203.
7. Sunkar R, Kapoor A, Zhu JK (2006) Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. Plant Cell 18: 2051-2065. (Pubitemid 44260196)
8. Jin D, Wang Y, Zhao Y, Chen M (2013) MicroRNAs and their cross-talks in plant development. J Genet Genomics 40: 161-170.
9. Lee H, Yoo SJ, Lee JH, Kim W, Yoo SK, et al. (2010) Genetic framework for flowering-time regulation by ambient temperature-responsive miRNAs in Arabidopsis. Nucleic Acids Res 38: 3081-3093.
10. Li WX, Oono Y, Zhu J, He XJ, Wu JM, et al. (2008) The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance. Plant Cell 20: 2238-2251. (Pubitemid 352844522)
11. Zhou X, Wang G, Sutoh K, Zhu JK, Zhang W (2008) Identification of cold-inducible microRNAs in plants by transcriptome analysis. Biochim Biophys Acta 1779: 780-788.
12. Jones-Rhoades MW, Bartel DP, Bartel B (2006) MicroRNAS and their regulatory roles in plants. Annu Rev Plant Biol 57: 19-53. (Pubitemid 44061017)
13. Ni Z, Hu Z, Jiang Q, Zhang H (2013) GmNFYA3, a target gene of miR169, is a positive regulator of plant tolerance to drought stress. Plant Mol Biol 82: 113-129.
14. Zhao B, Ge L, Liang R, LiW, Ruan K, et al. (2009) Members of miR-169 family are induced by high salinity and transiently inhibit the NF-YA transcription factor. BMC Mol Biol 10: 29.
15. Maity SN, de Crombrugghe B (1998) Role of the CCAAT-binding protein CBF/NF-Y in transcription. Trends Biochem Sci 23: 174-178. (Pubitemid 28261035)
16. Thirumurugan T, Ito Y, Kubo T, Serizawa A, Kurata N (2008) Identification, characterization and interaction of HAP family genes in rice. Mol Genet Genomics 279: 279-289.
17. Nardini M, Gnesutta N, Donati G, Gatta R, Forni C, et al. (2013) Sequence-specific transcription factor NF-Y displays histone-like DNA binding and H2B-like ubiquitination. Cell 152: 132-143.
18. Combier JP, Frugier F, de Billy F, Boualem A, El-Yahyaoui F, et al. (2006) MtHAP2-1 is a key transcriptional regulator of symbiotic nodule development regulated by microRNA169 in Medicago truncatula. Genes Dev 20: 3084-3088. (Pubitemid 44790624)
19. Xu Z, Zhong S, Li X, Li W, Rothstein SJ, et al. (2011) Genome-wide identification of microRNAs in response to low nitrate availability in maize leaves and roots. PLoS One 6: e28009.
20. Warpeha KM, Kaufman LS (2007) Opposite ends of the spectrum: plant and animal g-protein signaling. Plant Signal Behav 2: 480-482.
21. Xu MY ZL, Li WW, Hu XL, Wang MB, et al. (2013) Stress-induced early flowering is mediated by miR169 in Arabidopsis thaliana. Journal of Experimental Botany
22. Schwab R, Ossowski S, Riester M, Warthmann N, Weigel D (2006) Highly specific gene silencing by artificial microRNAs in Arabidopsis. Plant Cell 18: 1121-1133. (Pubitemid 43956120)
23. Cao S, Kumimoto RW, Siriwardana CL, Risinger JR, Holt BF 3rd (2011) Identification and characterization of NF-Y transcription factor families in the monocot model plant Brachypodium distachyon. PLoS One 6: e21805.
24. Romier C, Cocchiarella F, Mantovani R, Moras D (2003) The NF-YB/NF-YC structure gives insight into DNA binding and transcription regulation by CCAAT factor NF-Y. J Biol Chem 278: 1336-1345. (Pubitemid 36790819)
25. Liu HH, Tian X, Li YJ, Wu CA, Zheng CC (2008) Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana. RNA 14: 836-843. (Pubitemid 351574905)
26. Zhou X, Wang G, Zhang W (2007) UV-B responsive microRNA genes in Arabidopsis thaliana. Mol Syst Biol 3: 103.
27. Jia W, Wang Y, Zhang S, Zhang J (2002) Salt-stress-induced ABA accumulation is more sensitively triggered in roots than in shoots. J Exp Bot 53: 2201-2206. (Pubitemid 35273840)
28. Zhang X, Zou Z, Gong P, Zhang J, Ziaf K, et al. (2011) Over-expression of microRNA169 confers enhanced drought tolerance to tomato. Biotechnol Lett 33: 403-409.
29. Yin Z, Li Y, Yu J, Liu Y, Li C, et al. (2012) Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity. Mol Biol Rep 39: 4961-4970.
30. Yoo SD, Cho YH, Sheen J (2007) Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis. Nat Protoc 2: 1565-1572.
31. Varkonyi-Gasic E, Hellens RP (2011) Quantitative stem-loop RT-PCR for detection of microRNAs. Methods Mol Biol 744: 145-157.
32. Alves L Jr, Niemeier S, Hauenschild A, Rehmsmeier M, Merkle T (2009) Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana. Nucleic Acids Res 37: 4010-4021.
33. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.