-
1
-
-
8144225486
-
MicroRNA genes are transcribed by RNA polymerase II
-
524334 15372072 10.1038/sj.emboj.7600385
-
Lee Y Kim M Han J Yeom KH Lee S Baek SH Kim VN MicroRNA genes are transcribed by RNA polymerase II Embo J 2004, 23(20):4051-4060 524334 15372072 10.1038/sj.emboj.7600385
-
(2004)
Embo J
, vol.23
, Issue.20
, pp. 4051-4060
-
-
Lee, Y.1
Kim, M.2
Han, J.3
Yeom, K.H.4
Lee, S.5
Baek, S.H.6
Kim, V.N.7
-
2
-
-
9344235449
-
Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs
-
1370684 15525708 10.1261/rna.7135204
-
Cai X Hagedorn CH Cullen BR Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs Rna 2004, 10(12):1957-1966 1370684 15525708 10.1261/rna.7135204
-
(2004)
Rna
, vol.10
, Issue.12
, pp. 1957-1966
-
-
Cai, X.1
Hagedorn, C.H.2
Cullen, B.R.3
-
3
-
-
0347361541
-
Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs
-
305252 14681208 10.1101/gad.1158803
-
Yi R Qin Y Macara IG Cullen BR Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs Genes Dev 2003, 17(24):3011-3016 305252 14681208 10.1101/gad.1158803
-
(2003)
Genes Dev
, vol.17
, Issue.24
, pp. 3011-3016
-
-
Yi, R.1
Qin, Y.2
Macara, I.G.3
Cullen, B.R.4
-
4
-
-
23644433363
-
TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing
-
10.1038/nature03868 15973356
-
Chendrimada TP Gregory RI Kumaraswamy E Norman J Cooch N Nishikura K Shiekhattar R TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing Nature 2005, 436(7051):740-744 10.1038/ nature03868 15973356
-
(2005)
Nature
, vol.436
, Issue.7051
, pp. 740-744
-
-
Chendrimada, T.P.1
Gregory, R.I.2
Kumaraswamy, E.3
Norman, J.4
Cooch, N.5
Nishikura, K.6
Shiekhattar, R.7
-
5
-
-
0141843656
-
The nuclear RNase III Drosha initiates microRNA processing
-
10.1038/nature01957 14508493
-
Lee Y Ahn C Han J Choi H Kim J Yim J Lee J Provost P Radmark O Kim S et al: The nuclear RNase III Drosha initiates microRNA processing Nature 2003, 425(6956):415-419 10.1038/nature01957 14508493
-
(2003)
Nature
, vol.425
, Issue.6956
, pp. 415-419
-
-
Lee, Y.1
Ahn, C.2
Han, J.3
Choi, H.4
Kim, J.5
Yim, J.6
Lee, J.7
Provost, P.8
Radmark, O.9
Kim, S.10
-
6
-
-
10744225153
-
Asymmetry in the assembly of the RNAi enzyme complex
-
10.1016/S0092-8674(03)00759-1 14567917
-
Schwarz DS Hutvagner G Du T Xu Z Aronin N Zamore PD Asymmetry in the assembly of the RNAi enzyme complex Cell 2003, 115(2):199-208 10.1016/ S0092-8674(03)00759-1 14567917
-
(2003)
Cell
, vol.115
, Issue.2
, pp. 199-208
-
-
Schwarz, D.S.1
Hutvagner, G.2
Du, T.3
Xu, Z.4
Aronin, N.5
Zamore, P.D.6
-
7
-
-
0037197803
-
Identification of tissue-specific microRNAs from mouse
-
10.1016/S0960-9822(02)00809-6 12007417
-
Lagos-Quintana M Rauhut R Yalcin A Meyer J Lendeckel W Tuschl T Identification of tissue-specific microRNAs from mouse Curr Biol 2002, 12(9):735-739 10.1016/S0960-9822(02)00809-6 12007417
-
(2002)
Curr Biol
, vol.12
, Issue.9
, pp. 735-739
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Yalcin, A.3
Meyer, J.4
Lendeckel, W.5
Tuschl, T.6
-
8
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
10.1016/j.cell.2004.12.035 15652477
-
Lewis BP Burge CB Bartel DP Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets Cell 2005, 120(1):15-20 10.1016/j.cell.2004.12.035 15652477
-
(2005)
Cell
, vol.120
, Issue.1
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
9
-
-
11244251011
-
Plant and animal microRNAs: Similarities and differences
-
10.1007/s10142-005-0145-2 15875226
-
Millar AA Waterhouse PM Plant and animal microRNAs: Similarities and differences Functional & integrative genomics 2005, 5(3):129-135 10.1007/s10142-005-0145-2 15875226
-
(2005)
Functional & Integrative Genomics
, vol.5
, Issue.3
, pp. 129-135
-
-
Millar, A.A.1
Waterhouse, P.M.2
-
10
-
-
33747360451
-
MicroRNAs: Expression, avoidance and subversion by vertebrate viruses
-
10.1038/nrmicro1473 16912711
-
Sarnow P Jopling CL Norman KL Schutz S Wehner KA MicroRNAs: Expression, avoidance and subversion by vertebrate viruses Nature reviews 2006, 4(9):651-659 10.1038/nrmicro1473 16912711
-
(2006)
Nature Reviews
, vol.4
, Issue.9
, pp. 651-659
-
-
Sarnow, P.1
Jopling, C.L.2
Norman, K.L.3
Schutz, S.4
Wehner, K.A.5
-
11
-
-
0027751663
-
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
-
10.1016/0092-8674(93)90529-Y 8252621
-
Lee RC Feinbaum RL Ambros V The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14 Cell 1993, 75(5):843-854 10.1016/0092-8674(93)90529-Y 8252621
-
(1993)
Cell
, vol.75
, Issue.5
, pp. 843-854
-
-
Lee, R.C.1
Feinbaum, R.L.2
Ambros, V.3
-
12
-
-
0027730383
-
Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans
-
10.1016/0092-8674(93)90530-4 8252622
-
Wightman B Ha I Ruvkun G Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans Cell 1993, 75(5):855-862 10.1016/0092-8674(93)90530-4 8252622
-
(1993)
Cell
, vol.75
, Issue.5
, pp. 855-862
-
-
Wightman, B.1
Ha, I.2
Ruvkun, G.3
-
13
-
-
0034708122
-
The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans
-
10.1038/35002607 10706289
-
Reinhart BJ Slack FJ Basson M Pasquinelli AE Bettinger JC Rougvie AE Horvitz HR Ruvkun G The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans Nature 2000, 403(6772):901-906 10.1038/ 35002607 10706289
-
(2000)
Nature
, vol.403
, Issue.6772
, pp. 901-906
-
-
Reinhart, B.J.1
Slack, F.J.2
Basson, M.3
Pasquinelli, A.E.4
Bettinger, J.C.5
Rougvie, A.E.6
Horvitz, H.R.7
Ruvkun, G.8
-
14
-
-
33745239258
-
Approaches to microRNA discovery
-
10.1038/ng1794 16736019
-
Berezikov E Cuppen E Plasterk RH Approaches to microRNA discovery Nat Genet 2006, 38(Suppl):S2-7 10.1038/ng1794 16736019
-
(2006)
Nat Genet
, vol.38
, Issue.SUPPL.
-
-
Berezikov, E.1
Cuppen, E.2
Plasterk, R.H.3
-
15
-
-
30044443191
-
Modulation of microRNA processing and expression through RNA editing by ADAR deaminases
-
10.1038/nsmb1041 16369484
-
Yang W Chendrimada TP Wang Q Higuchi M Seeburg PH Shiekhattar R Nishikura K Modulation of microRNA processing and expression through RNA editing by ADAR deaminases Nature structural & molecular biology 2006, 13(1):13-21 10.1038/nsmb1041 16369484
-
(2006)
Nature Structural & Molecular Biology
, vol.13
, Issue.1
, pp. 13-21
-
-
Yang, W.1
Chendrimada, T.P.2
Wang, Q.3
Higuchi, M.4
Seeburg, P.H.5
Shiekhattar, R.6
Nishikura, K.7
-
16
-
-
32644454064
-
HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 2′ OH of the 3′ terminal nucleotide
-
1356533 16449203 10.1093/nar/gkj474
-
Yang Z Ebright YW Yu B Chen X HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 2′ OH of the 3′ terminal nucleotide Nucleic Acids Res 2006, 34(2):667-675 1356533 16449203 10.1093/nar/gkj474
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.2
, pp. 667-675
-
-
Yang, Z.1
Ebright, Y.W.2
Yu, B.3
Chen, X.4
-
17
-
-
0842278323
-
Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification
-
1370619 15317971 10.1261/rna.5206304
-
Ohler U Yekta S Lim LP Bartel DP Burge CB Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification Rna 2004, 10(9):1309-1322 1370619 15317971 10.1261/ rna.5206304
-
(2004)
Rna
, vol.10
, Issue.9
, pp. 1309-1322
-
-
Ohler, U.1
Yekta, S.2
Lim, L.P.3
Bartel, D.P.4
Burge, C.B.5
-
18
-
-
0038054470
-
Computational and experimental identification of C. elegans microRNAs
-
10.1016/S1097-2765(03)00153-9 12769849
-
Grad Y Aach J Hayes GD Reinhart BJ Church GM Ruvkun G Kim J Computational and experimental identification of C. elegans microRNAs Mol Cell 2003, 11(5):1253-1263 10.1016/S1097-2765(03)00153-9 12769849
-
(2003)
Mol Cell
, vol.11
, Issue.5
, pp. 1253-1263
-
-
Grad, Y.1
Aach, J.2
Hayes, G.D.3
Reinhart, B.J.4
Church, G.M.5
Ruvkun, G.6
Kim, J.7
-
19
-
-
0038825783
-
Computational identification of Drosophila microRNA genes
-
193629 12844358 10.1186/gb-2003-4-7-r42
-
Lai EC Tomancak P Williams RW Rubin GM Computational identification of Drosophila microRNA genes Genome Biol 2003, 4(7):R42 193629 12844358 10.1186/gb-2003-4-7-r42
-
(2003)
Genome Biol
, vol.4
, Issue.7
-
-
Lai, E.C.1
Tomancak, P.2
Williams, R.W.3
Rubin, G.M.4
-
20
-
-
0037447334
-
The microRNAs of Caenorhabditis elegans
-
196042 12672692 10.1101/gad.1074403
-
Lim LP Lau NC Weinstein EG Abdelhakim A Yekta S Rhoades MW Burge CB Bartel DP The microRNAs of Caenorhabditis elegans Genes Dev 2003, 17(8):991-1008 196042 12672692 10.1101/gad.1074403
-
(2003)
Genes Dev
, vol.17
, Issue.8
, pp. 991-1008
-
-
Lim, L.P.1
Lau, N.C.2
Weinstein, E.G.3
Abdelhakim, A.4
Yekta, S.5
Rhoades, M.W.6
Burge, C.B.7
Bartel, D.P.8
-
21
-
-
16344366331
-
Profile-based detection of microRNA precursors in animal genomes
-
10.1093/bioinformatics/bti073 15509608
-
Legendre M Lambert A Gautheret D Profile-based detection of microRNA precursors in animal genomes Bioinformatics 2005, 21(7):841-845 10.1093/ bioinformatics/bti073 15509608
-
(2005)
Bioinformatics
, vol.21
, Issue.7
, pp. 841-845
-
-
Legendre, M.1
Lambert, A.2
Gautheret, D.3
-
22
-
-
27844508214
-
Identification of clustered microRNAs using an ab initio prediction method
-
1315341 16274478 10.1186/1471-2105-6-267
-
Sewer A Paul N Landgraf P Aravin A Pfeffer S Brownstein MJ Tuschl T van Nimwegen E Zavolan M Identification of clustered microRNAs using an ab initio prediction method BMC Bioinformatics 2005, 6:267 1315341 16274478 10.1186/1471-2105-6-267
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 267
-
-
Sewer, A.1
Paul, N.2
Landgraf, P.3
Aravin, A.4
Pfeffer, S.5
Brownstein, M.J.6
Tuschl, T.7
van Nimwegen, E.8
Zavolan, M.9
-
23
-
-
22844440427
-
Identification of hundreds of conserved and nonconserved human microRNAs
-
10.1038/ng1590 15965474
-
Bentwich I Avniel A Karov Y Aharonov R Gilad S Barad O Barzilai A Einat P Einav U Meiri E et al. Identification of hundreds of conserved and nonconserved human microRNAs Nat Genet 2005, 37(7):766-770 10.1038/ ng1590 15965474
-
(2005)
Nat Genet
, vol.37
, Issue.7
, pp. 766-770
-
-
Bentwich, I.1
Avniel, A.2
Karov, Y.3
Aharonov, R.4
Gilad, S.5
Barad, O.6
Barzilai, A.7
Einat, P.8
Einav, U.9
Meiri, E.10
-
24
-
-
20844463414
-
Identification of microRNAs of the herpesvirus family
-
10.1038/nmeth746 15782219
-
Pfeffer S Sewer A Lagos-Quintana M Sheridan R Sander C Grasser FA van Dyk LF Ho CK Shuman S Chien M Identification of microRNAs of the herpesvirus family Nat Methods 2005, 2(4):269-276 10.1038/nmeth746 15782219
-
(2005)
Nat Methods
, vol.2
, Issue.4
, pp. 269-276
-
-
Pfeffer, S.1
Sewer, A.2
Lagos-Quintana, M.3
Sheridan, R.4
Sander, C.5
Grasser, F.A.6
van Dyk, L.F.7
Ho, C.K.8
Shuman, S.9
Chien, M.10
-
25
-
-
30344447264
-
Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine
-
1360673 16381612 10.1186/1471-2105-6-310
-
Xue C Li F He T Liu GP Li Y Zhang X Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine BMC Bioinformatics 2005, 6:310 1360673 16381612 10.1186/ 1471-2105-6-310
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 310
-
-
Xue, C.1
Li, F.2
He, T.3
Liu, G.P.4
Li, Y.5
Zhang, X.6
-
26
-
-
36249010340
-
miRRim: A novel system to find conserved miRNAs with high sensitivity and specificity
-
2080609 17959929 10.1261/rna.655107
-
Terai G Komori T Asai K Kin T miRRim: A novel system to find conserved miRNAs with high sensitivity and specificity Rna 2007, 13(12):2081-2090 2080609 17959929 10.1261/rna.655107
-
(2007)
Rna
, vol.13
, Issue.12
, pp. 2081-2090
-
-
Terai, G.1
Komori, T.2
Asai, K.3
Kin, T.4
-
27
-
-
0032119668
-
The Hierarchical Hidden Markov Model: Analysis and Applications
-
10.1023/A:1007469218079
-
Fine S Singer Y Tishby N The Hierarchical Hidden Markov Model: Analysis and Applications Machine Learning 1998, 32:41-62 10.1023/A:1007469218079
-
(1998)
Machine Learning
, vol.32
, pp. 41-62
-
-
Fine, S.1
Singer, Y.2
Tishby, N.3
-
30
-
-
33745211908
-
Conserved microRNA characteristics in mammals
-
10.1089/oli.2006.16.115 16764537
-
Saetrom P Snove O Nedland M Grunfeld TB Lin Y Bass MB Canon JR Conserved microRNA characteristics in mammals Oligonucleotides 2006, 16(2):115-144 10.1089/oli.2006.16.115 16764537
-
(2006)
Oligonucleotides
, vol.16
, Issue.2
, pp. 115-144
-
-
Saetrom, P.1
Snove, O.2
Nedland, M.3
Grunfeld, T.B.4
Lin, Y.5
Bass, M.B.6
Canon, J.R.7
-
31
-
-
0043123153
-
Vienna RNA secondary structure server
-
169005 12824340 10.1093/nar/gkg599
-
Hofacker IL Vienna RNA secondary structure server Nucleic Acids Res 2003, 31(13):3429-3431 169005 12824340 10.1093/nar/gkg599
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.13
, pp. 3429-3431
-
-
Hofacker, I.L.1
-
32
-
-
21844477027
-
Human microRNA prediction through a probabilistic co-learning model of sequence and structure
-
1159118 15987789 10.1093/nar/gki668
-
Nam JW Shin KR Han J Lee Y Kim VN Zhang BT Human microRNA prediction through a probabilistic co-learning model of sequence and structure Nucleic Acids Res 2005, 33(11):3570-3581 1159118 15987789 10.1093/nar/ gki668
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.11
, pp. 3570-3581
-
-
Nam, J.W.1
Shin, K.R.2
Han, J.3
Lee, Y.4
Kim, V.N.5
Zhang, B.T.6
-
33
-
-
48949083592
-
The opossum genome: Insights and opportunities from an alternative mammal
-
10.1101/gr.065326.107 18676819
-
Samollow PB The opossum genome: Insights and opportunities from an alternative mammal Genome Res 2008, 18(8):1199-1215 10.1101/ gr.065326.107 18676819
-
(2008)
Genome Res
, vol.18
, Issue.8
, pp. 1199-1215
-
-
Samollow, P.B.1
-
34
-
-
33749059160
-
miRBase: The microRNA sequence database
-
16957372
-
Griffiths-Jones S miRBase: The microRNA sequence database Methods Mol Biol 2006, 342:129-138 16957372
-
(2006)
Methods Mol Biol
, vol.342
, pp. 129-138
-
-
Griffiths-Jones, S.1
-
35
-
-
0036079158
-
The human genome browser at UCSC
-
186604 12045153
-
Kent WJ Sugnet CW Furey TS Roskin KM Pringle TH Zahler AM Haussler D The human genome browser at UCSC Genome Res 2002, 12(6):996-1006 186604 12045153
-
(2002)
Genome Res
, vol.12
, Issue.6
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
Zahler, A.M.6
Haussler, D.7
-
36
-
-
80052316582
-
TeraGrid: Analysis of Organization, System Architecture, and Middleware Enabling New Types of Applications
-
Amsterdam: IOS Press Grandinetti L
-
Catlett C Allcock WE Andrews P Aydt R Bair R Balac N Banister B Barker T Bartelt M Beckman P et al. TeraGrid: Analysis of Organization, System Architecture, and Middleware Enabling New Types of Applications High Performance Computing and Grids in Action Amsterdam: IOS Press Grandinetti L 2008:16
-
(2008)
High Performance Computing and Grids in Action
, vol.16
-
-
Catlett, C.1
Allcock, W.E.2
Andrews, P.3
Aydt, R.4
Bair, R.5
Balac, N.6
Banister, B.7
Barker, T.8
Bartelt, M.9
Beckman, P.10
|