메뉴 건너뛰기




Volumn 500, Issue 7461, 2013, Pages 194-198

Nitrogen losses in anoxic marine sediments driven by Thioploca-anammox bacterial consortia

Author keywords

[No Author keywords available]

Indexed keywords

NITROGEN; ORGANIC CARBON; RNA 16S;

EID: 84881446358     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature12365     Document Type: Article
Times cited : (93)

References (43)
  • 1
    • 0017861955 scopus 로고
    • Growth yields of green sulfur bacteria in mixed cultures with sulfur and sulfate reducing bacteria
    • Biebl, H.&Pfennig, N. Growth yields of green sulfur bacteria in mixed cultures with sulfur and sulfate reducing bacteria. Arch. Microbiol. 117, 9-16 (1978).
    • (1978) Arch. Microbiol , vol.117 , pp. 9-16
    • Biebl, H.1    Pfennig, N.2
  • 2
    • 42349106001 scopus 로고    scopus 로고
    • 3rd edn Ecophysiology and Biochemistry (edsDworkin, M., Falkow, S., Rosenberg, E., Schleifer, K. H. & Stackebrandt, E., Springer
    • Schink, B.& Stams, A. J. M. In Prokaryotes: A Handbook on the Biology of Bacteria Vol. 2, 3rd edn Ecophysiology and Biochemistry (edsDworkin, M., Falkow, S., Rosenberg, E., Schleifer, K. H. & Stackebrandt, E.) 309-335 (Springer, 2006).
    • (2006) Prokaryotes: A Handbook on the Biology of Bacteria , vol.2 , pp. 309-335
    • Schink, B.1    Stams, A.J.M.2
  • 3
    • 77953685263 scopus 로고    scopus 로고
    • Gibbs energies of reaction and microbial mutualismin anaerobic deep subseafloor sediments of ODP Site 1226
    • Wang, G. Z., Spivack, A. J. & D'Hondt, S. Gibbs energies of reaction and microbial mutualismin anaerobic deep subseafloor sediments of ODP Site 1226. Geochim. Cosmochim. Acta 74, 3938-3947 (2010).
    • (2010) Geochim. Cosmochim. Acta , vol.74 , pp. 3938-3947
    • Wang, G.Z.1    Spivack, A.J.2    D'hondt, S.3
  • 4
    • 0036417909 scopus 로고    scopus 로고
    • Biogeochemistry and microbial ecology of methane oxidation in anoxic environments: A review
    • Valentine, D. L. Biogeochemistry and microbial ecology of methane oxidation in anoxic environments: a review. Antonie van Leeuwenhoek 81, 271-282 (2002).
    • (2002) Antonie Van Leeuwenhoek , vol.81 , pp. 271-282
    • Valentine . D, L.1
  • 5
    • 0028583232 scopus 로고
    • Fieldandlaboratory studies ofmethane oxidation in an anoxicmarine sediment-evidence for amethanogensulfate reducer consortium
    • Hoehler, T.M.,Alperin,M. J.,Albert, D.B.&Martens, C.S. Fieldandlaboratory studies ofmethane oxidation in an anoxicmarine sediment-evidence for amethanogensulfate reducer consortium. Glob. Biogeochem. Cycles 8, 451-463 (1994).
    • (1994) Glob. Biogeochem. Cycles , vol.8 , pp. 451-463
    • Hoehler, T.M.1    Alperin, M.J.2    Albert, D.B.3    Martens, C.S.4
  • 6
    • 0035919654 scopus 로고    scopus 로고
    • Methaneconsuming archaea revealed by directly coupled isotopic and phylogenetic analysis
    • Orphan, V. J., House, C. H., Hinrichs, K. U.,McKeegan, K. D.&DeLong, E. F.Methaneconsuming archaea revealed by directly coupled isotopic and phylogenetic analysis. Science 293, 484-487 (2001).
    • (2001) Science , vol.293 , pp. 484-487
    • Orphan, V.J.1    House, C.H.2    Hinrichs, K.U.3    McKeegan, K.D.4    Delong, E.F.5
  • 7
    • 18844481026 scopus 로고    scopus 로고
    • A marine microbial consortium apparently mediating anaerobic oxidation of methane
    • Boetius, A. et al. A marine microbial consortium apparently mediating anaerobic oxidation of methane. Nature 407, 623-626 (2000).
    • (2000) Nature , vol.407 , pp. 623-626
    • Boetius, A.1
  • 8
    • 84881441787 scopus 로고    scopus 로고
    • Getting cozy: Hidden microbial interactions in nature
    • Orphan, V. J. Getting cozy: hidden microbial interactions in nature. Environ. Microbiol. Rep. 3, 16-18 (2011).
    • (2011) Environ. Microbiol. Rep , vol.3 , pp. 16-18
    • Orphan, V.J.1
  • 9
    • 24044532004 scopus 로고    scopus 로고
    • eds Follows, M. & Oguz, T. (NATO ASI Series Kluwer Academic
    • Gruber, N. in The Ocean Carbon Cycle and Climate (eds Follows, M. & Oguz, T.) 97-148 (NATO ASI Series, Kluwer Academic, 2004).
    • (2004) The Ocean Carbon Cycle and Climate , pp. 97-148
    • Gruber, N.1
  • 10
    • 40949090557 scopus 로고    scopus 로고
    • Anammox bacteria: From discovery to application
    • Kuenen, J. G. Anammox bacteria: from discovery to application. Nature Rev. Microbiol. 6, 320-326 (2008).
    • (2008) Nature Rev. Microbiol , vol.6 , pp. 320-326
    • Kuenen, J.G.1
  • 11
    • 0036197004 scopus 로고    scopus 로고
    • Production of N2 through anaerobic ammonium oxidation coupled to nitrate reduction in marine sediments
    • Thamdrup, B. & Dalsgaard, T. Production of N2 through anaerobic ammonium oxidation coupled to nitrate reduction in marine sediments. Appl. Environ. Microbiol. 68, 1312-1318 (2002).
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 1312-1318
    • Thamdrup, B.1    Dalsgaard, T.2
  • 12
    • 0033588510 scopus 로고    scopus 로고
    • Extensive bloom of a N2-fixing diatom/cyanobacterial associationinthe tropicalAtlanticOcean.Mar.Ecol
    • Carpenter, E. J. et al. Extensive bloom of a N2-fixing diatom/cyanobacterial associationinthe tropicalAtlanticOcean.Mar.Ecol. Prog.Ser.185,273-283(1999).
    • (1999) Prog.Ser , vol.185 , pp. 273-283
    • Carpenter, E.J.1
  • 13
    • 33749416596 scopus 로고    scopus 로고
    • Characterization of diatom-cyanobacteria symbioses on the basis of nifH, hetR and 16S rRNA sequences
    • Foster, R. A. & Zehr, J. P. Characterization of diatom-cyanobacteria symbioses on the basis of nifH, hetR and 16S rRNA sequences. Environ. Microbiol. 8, 1913-1925 (2006).
    • (2006) Environ. Microbiol , vol.8 , pp. 1913-1925
    • Foster, R.A.1    Zehr, J.P.2
  • 14
    • 84859921276 scopus 로고    scopus 로고
    • Denitrification likely catalyzed by endobionts in an allogromiid foraminifer
    • Bernhard, J. M., Edgcomb, V. P., Casciotti, K. L., McIlvin, M. R. & Beaudoin, D. J. Denitrification likely catalyzed by endobionts in an allogromiid foraminifer. ISME J. 6, 951-960 (2012).
    • (2012) ISME J. , vol.6 , pp. 951-960
    • Bernhard, J.M.1    Edgcomb, V.P.2    Casciotti, K.L.3    McIlvin, M.R.4    Beaudoin, D.J.5
  • 16
    • 31344461655 scopus 로고    scopus 로고
    • Nitrogen cycling in the sediments of Santa Barbara basin and Eastern Subtropical North Pacific: Nitrogen isotopes, diagenesis and possible chemosymbiosis between two lithotrophs Thioploca and anammox: Riding on a glider
    • Prokopenko, M. et al. Nitrogen cycling in the sediments of Santa Barbara basin and Eastern Subtropical North Pacific: nitrogen isotopes, diagenesis and possible chemosymbiosis between two lithotrophs Thioploca and anammox: riding on a glider. Earth Planet. Sci. Lett. 242, 186-204 (2006).
    • (2006) Earth Planet. Sci. Lett , vol.242 , pp. 186-204
    • Prokopenko, M.1
  • 17
    • 83755174683 scopus 로고    scopus 로고
    • Nitrogen cycling within suboxic and anoxic marine sediments from the continentalmarginofWesternNorthAmerica
    • Chong, L., Prokopenko, M. G., Berelson, W. M., Townsend-Small, A. & McManus, J. Nitrogen cycling within suboxic and anoxic marine sediments from the continentalmarginofWesternNorthAmerica.Mar.Chem.128-129,13-25(2012).
    • (2012) Mar.Chem , vol.128-129 , pp. 13-25
    • Chong, L.1    Prokopenko, M.G.2    Berelson, W.M.3    Townsend-Small, A.4    McManus, J.5
  • 18
    • 80054680524 scopus 로고    scopus 로고
    • Denitrification in anoxic sediments supported by biological nitrate transport
    • Prokopenko, M. et al. Denitrification in anoxic sediments supported by biological nitrate transport. Geochim. Cosmochim. Acta 75, 7180-7199 (2011).
    • (2011) Geochim. Cosmochim. Acta , vol.75 , pp. 7180-7199
    • Prokopenko, M.1
  • 19
    • 0033067617 scopus 로고    scopus 로고
    • Thioploca spp: Filamentous sulfur bacteria with nitrate vacuoles
    • Jorgensen, B. B. & Gallardo, V. A. Thioploca spp: filamentous sulfur bacteria with nitrate vacuoles. FEMS Microbiol. Ecol. 28, 301-313 (1999).
    • (1999) FEMS Microbiol. Ecol , vol.28 , pp. 301-313
    • Jorgensen, B.B.1    Gallardo, V.A.2
  • 20
    • 0028977490 scopus 로고
    • Concentration and transport of nitrate by mat-forming sulphur bacterium Thioploca
    • Fossing, H. et al. Concentration and transport of nitrate by mat-forming sulphur bacterium Thioploca. Nature 374, 713-715 (1995).
    • (1995) Nature , vol.374 , pp. 713-715
    • Fossing, H.1
  • 21
    • 0033050647 scopus 로고    scopus 로고
    • Nitrogen, carbon, and sulfur metabolism in natural Thioploca samples
    • Otte, S. et al. Nitrogen, carbon, and sulfur metabolism in natural Thioploca samples. Appl. Environ. Microbiol. 65, 3148-3157 (1999).
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 3148-3157
    • Otte, S.1
  • 22
    • 33845678570 scopus 로고    scopus 로고
    • Sensitivity of the North Pacific oxygen minimumzone to changes in ocean circulation: A simplemodel calibrated by chlorofluorocarbons
    • van Geen, A., Smethie, W. M., Horneman, A. & Lee, H. Sensitivity of the North Pacific oxygen minimumzone to changes in ocean circulation: a simplemodel calibrated by chlorofluorocarbons. J. Geophys. Res. 111, C10004 (2006).
    • (2006) J. Geophys. Res , vol.111
    • Van Geen, A.1    Smethie, W.M.2    Horneman, A.3    Lee, H.4
  • 24
    • 77955263252 scopus 로고    scopus 로고
    • Deepsequencing reveals exceptional diversity andmodesof transmission for bacterial sponge symbionts
    • Webster,N. S. et al.Deepsequencing reveals exceptional diversity andmodesof transmission for bacterial sponge symbionts. Environ. Microbiol. 12, 2070-2082 (2010).
    • (2010) Environ. Microbiol , vol.12 , pp. 2070-2082
    • Webster, N.S.1
  • 25
    • 26844508840 scopus 로고    scopus 로고
    • Anaerobic diagenesis of silica and carbon in continental margin sediments: Discrete zones of TCO2 production
    • Berelson, W. et al. Anaerobic diagenesis of silica and carbon in continental margin sediments: discrete zones of TCO2 production. Geochim. Cosmochim. Acta 69, 4611-4629 (2005).
    • (2005) Geochim. Cosmochim. Acta , vol.69 , pp. 4611-4629
    • Berelson, W.1
  • 26
    • 84977322088 scopus 로고
    • Denitrification in continental shelf sediments has major impact on the oceanic nitrogen budget
    • Christensen, J. P., Murray, J. W., Devol, A. H. & Codispoti, L. A. Denitrification in continental shelf sediments has major impact on the oceanic nitrogen budget. Glob. Biogeochem. Cycles 1, 97-116 (1987).
    • (1987) Glob. Biogeochem. Cycles , vol.1 , pp. 97-116
    • Christensen, J.P.1    Murray, J.W.2    Devol, A.H.3    Codispoti, L.A.4
  • 27
    • 0037438903 scopus 로고    scopus 로고
    • Role of a strong oxygen-deficient zone in the preservation and degradation of organic matter: A carbon budget for the continental margins of northwest Mexico and Washington State
    • Hartnett, H. E. & Devol, A. H. Role of a strong oxygen-deficient zone in the preservation and degradation of organic matter: a carbon budget for the continental margins of northwest Mexico and Washington State. Geochim. Cosmochim. Acta 67, 247-264 (2003).
    • (2003) Geochim. Cosmochim. Acta , vol.67 , pp. 247-264
    • Hartnett, H.E.1    Devol, A.H.2
  • 28
    • 0030746754 scopus 로고    scopus 로고
    • Summer and winter denitrification rates in western Arctic shelf sediments
    • Devol, A. H., Codispoti, L. A. & Christensen, J. P. Summer and winter denitrification rates in western Arctic shelf sediments. Cont. Shelf Res. 17, 1029-1033 (1997).
    • (1997) Cont. Shelf Res , vol.17 , pp. 1029-1033
    • Devol, A.H.1    Codispoti, L.A.2    Christensen, J.P.3
  • 29
    • 0030474545 scopus 로고    scopus 로고
    • Biogenic matter diagenesis on the sea floor: A comparison between two continental margin transects
    • Berelson, W. M. et al. Biogenic matter diagenesis on the sea floor: a comparison between two continental margin transects. J. Mar. Res. 54, 731-762 (1996).
    • (1996) J. Mar. Res , vol.54 , pp. 731-762
    • Berelson, W.M.1
  • 30
    • 67549107260 scopus 로고    scopus 로고
    • Physiology and behaviour of marine Thioploca
    • Hogslund, S. et al. Physiology and behaviour of marine Thioploca. ISME J. 3, 647-657 (2009).
    • (2009) ISME J , vol.3 , pp. 647-657
    • Hogslund, S.1
  • 31
    • 0346666701 scopus 로고    scopus 로고
    • Morphological and phylogenetic characterizations of freshwater thioploca species fromlake Biwa, Japan,and lake constance, Germany
    • Kojima, H., Teske, A. & Fukuki, M. Morphological and phylogenetic characterizations of freshwater Thioploca species fromLake Biwa, Japan,and Lake Constance, Germany. Appl. Environ. Microbiol. 69, 390-398 (2003).
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 390-398
    • Kojima, H.1    Teske, A.2    Fukuki, M.3
  • 32
    • 33748799671 scopus 로고    scopus 로고
    • New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras
    • Ashelford, K. E., Chuzhanova, N. A., Fry, J. C., Jones, A. J. & Weightman, A. J. New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras. Appl. Environ. Microbiol. 72, 5734-5741 (2006).
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 5734-5741
    • Ashelford, K.E.1    Chuzhanova, N.A.2    Fry, J.C.3    Jones, A.J.4    Weightman, A.J.5
  • 33
    • 0030066830 scopus 로고
    • Phylogeny of Thioploca and related filamentous sulfide-oxidizing bacteria
    • Teske, A., Ramsing, N. B., Kuver, J. & Fossing, H. Phylogeny of Thioploca and related filamentous sulfide-oxidizing bacteria. Syst. Appl. Microbiol. 18, 517-526 (1995).
    • (1995) Syst. Appl. Microbiol , vol.18 , pp. 517-526
    • Teske, A.1    Ramsing, N.B.2    Kuver, J.3    Fossing, H.4
  • 34
    • 79955467067 scopus 로고    scopus 로고
    • A single-cell sequencing approach to the classification of large, vacuolated sulfur bacteria
    • Salman, V. et al. A single-cell sequencing approach to the classification of large, vacuolated sulfur bacteria. Syst. Appl. Microbiol. 34, 243-259 (2011).
    • (2011) Syst. Appl. Microbiol , vol.34 , pp. 243-259
    • Salman, V.1
  • 35
    • 0033066120 scopus 로고    scopus 로고
    • Stresses at the cell-to-substrate interface during locomotion of fibroblasts
    • Dembo, M. & Wang, Y. L. Stresses at the cell-to-substrate interface during locomotion of fibroblasts. Biophys. J. 76, 2307-2316 (1999).
    • (1999) Biophys. J , vol.76 , pp. 2307-2316
    • Dembo, M.1    Wang, Y.L.2
  • 36
    • 20244376481 scopus 로고    scopus 로고
    • Biomarkers for in situ detection of anaerobic ammoniumoxidizing (anammox) bacteria
    • Schmid, M. C. et al. Biomarkers for in situ detection of anaerobic ammoniumoxidizing (anammox) bacteria. Appl. Environ. Microbiol. 71, 1677-1684 (2005).
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 1677-1684
    • Schmid, M.C.1
  • 37
    • 68549110283 scopus 로고    scopus 로고
    • Denitrifying bacterial community composition changes associated with stages of denitrification in oxygen minimum zones
    • Jayakumar, A., O'Mullan, G. D., Naqvi, S. W. A. & Ward, B. B. Denitrifying bacterial community composition changes associated with stages of denitrification in oxygen minimum zones. Microb. Ecol. 58, 350-362 (2009).
    • (2009) Microb. Ecol , vol.58 , pp. 350-362
    • Jayakumar, A.1    O'mullan, G.D.2    Naqvi, S.W.A.3    Ward, B.B.4
  • 38
    • 2542523843 scopus 로고    scopus 로고
    • ARB: A software environment for sequence data
    • Ludwig, W. et al.ARB: a software environment for sequence data.Nucleic Acids Res. 32, 1363-1371 (2004).
    • (2004) Nucleic Acids Res , vol.32 , pp. 1363-1371
    • Ludwig, W.1
  • 39
    • 33750042897 scopus 로고    scopus 로고
    • Molecular evidence for the broad distribution of anaerobicammonium- oxidizing bacteria in freshwater and marine sediments
    • Penton, C. R., Devol, A. H. & Tiedje, J. M. Molecular evidence for the broad distribution of anaerobicammonium-oxidizing bacteria in freshwater and marine sediments. Appl. Environ. Microbiol. 72, 6829-6832 (2006).
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 6829-6832
    • Penton, C.R.1    Devol, A.H.2    Tiedje, J.M.3
  • 40
    • 79951511604 scopus 로고    scopus 로고
    • Anammox bacterial diversity in various aquatic ecosystems based on the detection of hydrazine oxidase genes (hzoA/hzoB)
    • Hirsch, M. D., Long, Z. T. & Song, B. Anammox bacterial diversity in various aquatic ecosystems based on the detection of hydrazine oxidase genes (hzoA/hzoB). Microb. Ecol. 61, 264-276 (2011).
    • (2011) Microb. Ecol , vol.61 , pp. 264-276
    • Hirsch, M.D.1    Long, Z.T.2    Song, B.3
  • 41
    • 0027045138 scopus 로고
    • Small-volume, flow injection analysis for CO2 andNH4 1 in marine and freshwaters
    • Hall, P. O. J. & Aller, R. C.Small-volume, flow injection analysis for CO2 andNH4 1 in marine and freshwaters. Limnol. Oceanogr. 37, 1113-1119 (1992).
    • (1992) Limnol. Oceanogr , vol.37 , pp. 1113-1119
    • Hall, P.O.J.1    Aller, R.C.2
  • 42
    • 0029539147 scopus 로고
    • Combined microdiffusionhypobromite oxidation method for determining 15N isotope in ammonium
    • Risgaard-Petersen, N., Rysgaard, S. & Revsbech, N. P. Combined microdiffusionhypobromite oxidation method for determining 15N isotope in ammonium. Soil Sci. Soc. Am. J. 59, 1077-1080 (1995).
    • (1995) Soil Sci. Soc. Am. J , vol.59 , pp. 1077-1080
    • Risgaard-Petersen, N.1    Rysgaard, S.2    Revsbech, N.P.3
  • 43
    • 80052962331 scopus 로고    scopus 로고
    • Intensive nitrogen lossover theOmanishelfdue to anammoxcoupled with dissimilatory nitrite reduction to ammonium
    • Jensen,E.S. et al. Intensive nitrogen lossover theOmanishelfdue to anammoxcoupled with dissimilatory nitrite reduction to ammonium. ISME J. 5, 1660-1670 (2011).
    • (2011) ISME J , vol.5 , pp. 1660-1670
    • Jensen, E.S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.