Network relationships of bacteria in a stable mixed culture

Microbial Ecology

Volumn 56, Issue 3, 2008, Pages 403-411

  Kato, Souichiro ^a,c   Haruta, Shin ^a,d   Cui, Zong Jun ^b   Ishii, Masaharu ^a   Igarashi, Yasuo ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b CHINA AGRICULTURAL UNIVERSITY   (China)

^c MARINE BIOTECHNOLOGY INSTITUTE   (Japan)

^d TOKYO METROPOLITAN UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CELLULOSE;

ARTICLE; BACILLUS; CHEMISTRY; CLOSTRIDIUM; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; PHYSIOLOGY; POLYMERASE CHAIN REACTION; SYMBIOSIS; XANTHOMONADACEAE;

BACILLUS; CELLULOSE; CLOSTRIDIUM; DNA, BACTERIAL; POLYMERASE CHAIN REACTION; SYMBIOSIS; XANTHOMONADACEAE;

BACTERIA (MICROORGANISMS);

EID: 51349112344     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-007-9357-4     Document Type: Article

References (36)

1. Alexander M (1997) Microbial communities and interactions: a prelude. In: Hurst CJ, Knudsen GR, McInerney MJ, Stetzenbach LD, Walter MV (eds) Manual of environmental microbiology. ASM, Washington, DC, pp 5-13
2. SK Aoki R Pamma AD Hernday JE Bickham BA Braaten DA Low 2005 Contact-dependent inhibition of growth in Escherichia coli Science 309 1245 1248
3. BJM Bohannan RE Lenski 2000 The relative importance of competition and predation varies with productivity in a model community Am Nat 156 329 340
4. A Briones L Raskin 2003 Diversity and dynamics of microbial communities in engineered environments and their implications for process stability Curr Opin Biotechnol 14 270 276
5. A Bruns H Cypionka J Overmann 2002 Cyclic AMP and acyl homoserine lactones increase the cultivation efficiency of heterotrophic bacteria from the central Baltic Sea Appl Environ Microbiol 68 3978 3987
6. A Bruns U Nubel H Cypionka J Overmann 2003 Effect of signal compounds and incubation conditions on the culturability of freshwater bacterioplankton Appl Environ Microbiol 69 1980 1989
7. HF von Canstein Y Li A Felske I Wagner-Döbler 2001 Long-term stability of mercury reducing microbial biofilm communities analyzed by 16S-23S rDNA interspacer region polymorphism Microb Ecol 42 624 634
8. ZJ Cui MD Li Z Piao ZY Huang M Ishii Y Igarashi 2002 Selection of a composite microbial system MC1 with efficient and stability cellulose degradation bacteria and its function Environ Sci 23 36 39
9. SL Dollhopf ML Pariseau SA Hashsham JM Tiedje 2003 Competitive and cooperative interactions affecting a fermentative spirochete in anaerobic chemostats Microb Ecol 46 1 11
10. A Fernández S Huang S Seston J Xing R Hickey C Criddle J Tiedje 1999 How stable is stable? Function versus community composition Appl Environ Microbiol 65 3697 3704
11. AS Fernández SA Hashsham SL Dollhope L Raskin O Glagoleva FB Dazzo RF Hickey CS Criddle JM Tiedje 2000 Flexible community structure correlates with stable community function in methanogenic bioreactor communities perturbed by glucose Appl Environ Microbiol 66 4058 4067
12. JR Graber JA Breznak 2005 Folate cross-feeding supports symbiotic homoacetogenic spirochetes Appl Environ Microbiol 71 1883 1889
13. D Grenier D Mayrand 1986 Nutritional relationships between oral bacteria Infect Immun 53 616 620
14. LL Guan H Onuki K Kamino 2000 Bacterial growth stimulation with exogenous siderophore and synthetic N-acyl homoserine lactone autoinducers under iron-limited and low-nutrient conditions Appl Environ Microbiol 66 2797 2803
15. S Haruta Z Cui Z Huang M Li M Ishii Y Igarashi 2002 Construction of a stable microbial community with high cellulose-degradation ability Appl Microbiol Biotechnol 59 529 534
16. SA Hashsham AS Fernandez SL Dollhopf FB Dazzo RF Hickey JM Tiedje CS Criddle 2000 Parallel processing of substrate correlates with greater functional stability in methanogenic bioreactor communities perturbed by glucose Appl Environ Microbiol 66 4050 4057
17. L Hobley JR King RE Sockett 2006 Bdellovibrio predation in the presence of decoys: three-way bacterial interactions revealed by mathematical and experimental analyses Appl Environ Microbiol 72 6757 6765
18. Holdeman LV, Cato EP, Moore WEC (1977) Anaerobe laboratory manual, 4th edn. Anaerobe Laboratory, Virginia Polytechnic Institute and State University, Blacksburg, VA
19. AR Ives SR Carpenter 2007 Stability and diversity of ecosystems Science 317 58 62
20. S Kato S Haruta ZJ Cui M Ishii Y Igarashi 2004 Effective cellulose degradation by a mixed-culture system composed of a cellulolytic Clostridium and aerobic non-cellulolytic bacteria FEMS Microbiol Ecol 51 133 142
21. S Kato S Haruta ZJ Cui M Ishii A Yokota Y Igarashi 2004 Clostridium straminisolvens sp. nov., a moderately thermophilic, aerotolerant and cellulolytic bacterium isolated from a cellulose-degrading bacterial community Int J Syst Evol Microbiol 54 2043 2047
22. S Kato S Haruta ZJ Cui M Ishii Y Igarashi 2005 Stable coexistence of five bacterial strains as a cellulose-degrading community Appl Environ Microbiol 71 7099 7106
23. B Kerr MA Riley MW Feldman BJM Bohannan 2002 Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors Nature 418 171174
24. MA Leibold JM Chase JB Shurin AL Downing 1997 Species turnover and the regulation of trophic structure Annu Rev Ecol Syst 28 467 494
25. Maniatis T, Fritsch EF, Sambrook J (eds) (1982) In: Molecular cloning. 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
26. KS McCann 2000 The diversity-stability debate Nature 405 228 233
27. BA Menge 1995 Indirect effects in marine rocky intertidal interaction webs: patterns and importance Ecol Monogr 65 21 74
28. JN Saddler MKH Chan 1982 Optimization of Clostridium thermocellum growth on cellulose and pretreated wood substrates Appl Microbiol Biotechnol 16 99 104
29. PE Saikaly DB Oerther 2004 Bacterial competition in activated sludge: theoretical analysis of varying solid retention times on diversity Microb Ecol 48 274 284
30. ES Slechta MA Mulvey 2006 Contact-dependent inhibition: bacterial brakes and secret handshakes Trends Microbiol 14 58 60
31. NR Smith Z Yu WW Mohn 2003 Stability of the bacterial community in a pulp mill effluent treatment system during normal operation and a system shutdown Water Res 37 4873 4884
32. SR Sorensen Z Ronen J Aamand 2002 Growth in coculture stimulates metabolism of the phenylurea herbicide isoproturon by Sphingomonas sp. strain SRS2 Appl Environ Microbiol 68 3478 3485
33. P Taillisz H Girard J Millet P Beguin 1989 Enhanced cellulose fermentation by an asporogenous and ethanol-tolerant mutant of Clostridium thermocellum Appl Environ Microbiol 55 207 211
34. K Tait IW Sutherland 2002 Antagonistic interactions amongst bacteriocin-producing enteric bacteria in dual species biofilms J Appl Microbiol 93 345 352
35. JT Wootton 1994 The nature and consequences of indirect effects in ecological communities Annu Rev Ecol Syst 25 443 466
36. H Zhu F Qu LH Zhu 1993 Isolation of genomic DNAs from plants, fungi and bacteria using benzyl chloride Nucleic Acids Res 21 5278 5280