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Volumn 18, Issue 1, 2014, Pages 72-77

Synthetic microbial communities

Author keywords

[No Author keywords available]

Indexed keywords

CELLULOSE;

EID: 84896045978     PISSN: 13695274     EISSN: 18790364     Source Type: Journal    
DOI: 10.1016/j.mib.2014.02.002     Document Type: Review
Times cited : (337)

References (50)
  • 1
    • 49649089054 scopus 로고    scopus 로고
    • Molecular eco-systems biology: towards an understanding of community function
    • Raes J., Bork P. Molecular eco-systems biology: towards an understanding of community function. Nat Rev Microbiol 2008, 6:693-699.
    • (2008) Nat Rev Microbiol , vol.6 , pp. 693-699
    • Raes, J.1    Bork, P.2
  • 4
    • 78650008729 scopus 로고    scopus 로고
    • Linking bacterial identities and ecosystem processes: can "omic" analyses be more than the sum of their parts?
    • Morales S.E., Holben W.E. Linking bacterial identities and ecosystem processes: can "omic" analyses be more than the sum of their parts?. FEMS Microbiol Ecol 2011, 75:2-16.
    • (2011) FEMS Microbiol Ecol , vol.75 , pp. 2-16
    • Morales, S.E.1    Holben, W.E.2
  • 8
    • 33746659029 scopus 로고    scopus 로고
    • Towards the design of diversity: stochastic models for community assembly in wastewater treatment plants
    • Curtis T.P.P., Sloan W.T.T. Towards the design of diversity: stochastic models for community assembly in wastewater treatment plants. Water Sci Technol 2006, 54:227.
    • (2006) Water Sci Technol , vol.54 , pp. 227
    • Curtis, T.P.P.1    Sloan, W.T.T.2
  • 9
    • 84861992014 scopus 로고    scopus 로고
    • The application of ecological theory toward an understanding of the human microbiome
    • Costello E.K., Stagaman K., Dethlefsen L., Bohannan B.J.M., Relman D. The application of ecological theory toward an understanding of the human microbiome. Science 2012, 336:1255-1262.
    • (2012) Science , vol.336 , pp. 1255-1262
    • Costello, E.K.1    Stagaman, K.2    Dethlefsen, L.3    Bohannan, B.J.M.4    Relman, D.5
  • 10
    • 84893668843 scopus 로고    scopus 로고
    • Estimating the number of species in microbial diversity studies
    • 2.1-2.19
    • Bunge J., Willis A., Walsh F. Estimating the number of species in microbial diversity studies. Annu Rev Stat Appl 2013, 1:2.1-2.19.
    • (2013) Annu Rev Stat Appl , vol.1
    • Bunge, J.1    Willis, A.2    Walsh, F.3
  • 11
    • 0038482137 scopus 로고    scopus 로고
    • Diversity and dynamics of microbial communities in engineered environments and their implications for process stability
    • Briones A., Raskin L Diversity and dynamics of microbial communities in engineered environments and their implications for process stability. Curr Opin Biotechnol 2003, 14:270-276.
    • (2003) Curr Opin Biotechnol , vol.14 , pp. 270-276
    • Briones, A.1    Raskin, L.2
  • 12
    • 0036275064 scopus 로고    scopus 로고
    • Species diversity improves the efficiency of mercury-reducing biofilms under changing environmental conditions
    • Canstein H., Von, Kelly S., Li Y., Wagner-Döbler I. Species diversity improves the efficiency of mercury-reducing biofilms under changing environmental conditions. Appl Environ Microbiol 2002, 68:2829-2837.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 2829-2837
    • Canstein, H.1    Kelly, V.S.2    Li, Y.3    Wagner-Döbler, I.4
  • 13
    • 0034601511 scopus 로고    scopus 로고
    • Diversity peaks at intermediate productivity in a laboratory microcosm
    • Kassen R., Buckling A., Bell G., Rainey P.B. Diversity peaks at intermediate productivity in a laboratory microcosm. Nature 2000, 406:508-512.
    • (2000) Nature , vol.406 , pp. 508-512
    • Kassen, R.1    Buckling, A.2    Bell, G.3    Rainey, P.B.4
  • 14
    • 0030871461 scopus 로고    scopus 로고
    • Energetics of syntrophic cooperation in methanogenic degradation
    • Schink B. Energetics of syntrophic cooperation in methanogenic degradation. Microbiol Mol Biol Rev 1997, 61:262-280.
    • (1997) Microbiol Mol Biol Rev , vol.61 , pp. 262-280
    • Schink, B.1
  • 15
    • 84888586768 scopus 로고    scopus 로고
    • A genotypic view of social interactions in microbial communities
    • Mitri S., Foster K.R. A genotypic view of social interactions in microbial communities. Annu Rev Genet 2013, 10.1146/annurev-genet-111212-133307.
    • (2013) Annu Rev Genet
    • Mitri, S.1    Foster, K.R.2
  • 16
    • 79954515937 scopus 로고    scopus 로고
    • Social interaction in synthetic and natural microbial communities
    • Xavier J.B. Social interaction in synthetic and natural microbial communities. Mol Syst Biol 2011, 7:483.
    • (2011) Mol Syst Biol , vol.7 , pp. 483
    • Xavier, J.B.1
  • 17
    • 84867200131 scopus 로고    scopus 로고
    • Engineering microbial systems to explore ecological and evolutionary dynamics
    • Tanouchi Y., Smith R.P., You L. Engineering microbial systems to explore ecological and evolutionary dynamics. Curr Opin Biotechnol 2012, 23:791-797.
    • (2012) Curr Opin Biotechnol , vol.23 , pp. 791-797
    • Tanouchi, Y.1    Smith, R.P.2    You, L.3
  • 18
    • 78649851616 scopus 로고    scopus 로고
    • Dynamics in the mixed microbial concourse
    • Wintermute E.H., Silver P.A. Dynamics in the mixed microbial concourse. Genes Dev 2010, 24:2603-2614.
    • (2010) Genes Dev , vol.24 , pp. 2603-2614
    • Wintermute, E.H.1    Silver, P.A.2
  • 19
    • 84867405105 scopus 로고    scopus 로고
    • Competition, not cooperation, dominates interactions among culturable microbial species
    • Foster K.R., Bell T. Competition, not cooperation, dominates interactions among culturable microbial species. Curr Biol 2012, 22:1845-1850.
    • (2012) Curr Biol , vol.22 , pp. 1845-1850
    • Foster, K.R.1    Bell, T.2
  • 21
    • 77950831062 scopus 로고    scopus 로고
    • Emergence of spatial structure in cell groups and the evolution of cooperation
    • Nadell C.D., Foster K.R., Xavier J.B. Emergence of spatial structure in cell groups and the evolution of cooperation. PLoS Comput Biol 2010, 6:e1000716.
    • (2010) PLoS Comput Biol , vol.6
    • Nadell, C.D.1    Foster, K.R.2    Xavier, J.B.3
  • 23
    • 33846936445 scopus 로고    scopus 로고
    • Synthetic cooperation in engineered yeast populations
    • Shou W., Ram S., Vilar J.M.G. Synthetic cooperation in engineered yeast populations. Proc Natl Acad Sci U S A 2007, 104:1877-1882.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 1877-1882
    • Shou, W.1    Ram, S.2    Vilar, J.M.G.3
  • 24
    • 84859123293 scopus 로고    scopus 로고
    • A programmable Escherichia coli consortium via tunable symbiosis
    • Kerner A., Park J., Williams A., Lin X.N. A programmable Escherichia coli consortium via tunable symbiosis. PLoS One 2012, 7:e34032.
    • (2012) PLoS One , vol.7
    • Kerner, A.1    Park, J.2    Williams, A.3    Lin, X.N.4
  • 25
    • 84876784021 scopus 로고    scopus 로고
    • Consortia-mediated bioprocessing of cellulose to ethanol with a symbiotic Clostridium phytofermentans/yeast co-culture
    • Zuroff T.R., Xiques S.B., Curtis W.R. Consortia-mediated bioprocessing of cellulose to ethanol with a symbiotic Clostridium phytofermentans/yeast co-culture. Biotechnol Biofuels 2013, 6:59.
    • (2013) Biotechnol Biofuels , vol.6 , pp. 59
    • Zuroff, T.R.1    Xiques, S.B.2    Curtis, W.R.3
  • 26
    • 78649677586 scopus 로고    scopus 로고
    • Environments that induce synthetic microbial ecosystems
    • Klitgord N., Segre D., Segrè D. Environments that induce synthetic microbial ecosystems. PLoS Comput Biol 2010, 6:e1001002.
    • (2010) PLoS Comput Biol , vol.6
    • Klitgord, N.1    Segre, D.2    Segrè, D.3
  • 27
    • 76649104057 scopus 로고    scopus 로고
    • Rapid evolution of stability and productivity at the origin of a microbial mutualism
    • Hillesland K.L., Stahl D.A. Rapid evolution of stability and productivity at the origin of a microbial mutualism. Proc Natl Acad Sci U S A 2010, 107:2124-2129.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 2124-2129
    • Hillesland, K.L.1    Stahl, D.A.2
  • 28
    • 78649707496 scopus 로고    scopus 로고
    • Direct exchange of electrons within aggregates of an evolved syntrophic coculture of anaerobic bacteria
    • Summers Z.M., Fogarty H.E., Leang C., Franks A.E., Malvankar N.S., Lovley D.R. Direct exchange of electrons within aggregates of an evolved syntrophic coculture of anaerobic bacteria. Science 2010, 330:1413-1415.
    • (2010) Science , vol.330 , pp. 1413-1415
    • Summers, Z.M.1    Fogarty, H.E.2    Leang, C.3    Franks, A.E.4    Malvankar, N.S.5    Lovley, D.R.6
  • 30
    • 0037062936 scopus 로고    scopus 로고
    • Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors
    • Kerr B., Riley M.A., Feldman M.W., Bohannan B.J.M. Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors. Nature 2002, 418:171-174.
    • (2002) Nature , vol.418 , pp. 171-174
    • Kerr, B.1    Riley, M.A.2    Feldman, M.W.3    Bohannan, B.J.M.4
  • 31
    • 55749087868 scopus 로고    scopus 로고
    • Large-scale reconstruction and phylogenetic analysis of metabolic environments
    • Borenstein E., Kupiec M., Feldman M.W., Ruppin E. Large-scale reconstruction and phylogenetic analysis of metabolic environments. Proc Natl Acad Sci U S A 2008, 105:14482-14487.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 14482-14487
    • Borenstein, E.1    Kupiec, M.2    Feldman, M.W.3    Ruppin, E.4
  • 32
    • 77954241658 scopus 로고    scopus 로고
    • The large-scale organization of the bacterial network of ecological co-occurrence interactions
    • Freilich S., Kreimer A., Meilijson I., Gophna U., Sharan R., Ruppin E. The large-scale organization of the bacterial network of ecological co-occurrence interactions. Nucleic Acids Res 2010, 38:3857-3868.
    • (2010) Nucleic Acids Res , vol.38 , pp. 3857-3868
    • Freilich, S.1    Kreimer, A.2    Meilijson, I.3    Gophna, U.4    Sharan, R.5    Ruppin, E.6
  • 33
    • 67651202726 scopus 로고    scopus 로고
    • Electron transfer in syntrophic communities of anaerobic bacteria and archaea
    • Stams A.J.M., Plugge C.M. Electron transfer in syntrophic communities of anaerobic bacteria and archaea. Nat Rev Microbiol 2009, 7:568-577.
    • (2009) Nat Rev Microbiol , vol.7 , pp. 568-577
    • Stams, A.J.M.1    Plugge, C.M.2
  • 34
    • 79951565020 scopus 로고    scopus 로고
    • Maintenance affects the stability of a two-tiered microbial "food chain"?
    • Xu A., Dolfing J., Curtis T.P., Montague G., Martin E. Maintenance affects the stability of a two-tiered microbial "food chain"?. J Theor Biol 2011, 276:35-41.
    • (2011) J Theor Biol , vol.276 , pp. 35-41
    • Xu, A.1    Dolfing, J.2    Curtis, T.P.3    Montague, G.4    Martin, E.5
  • 35
    • 84866297486 scopus 로고    scopus 로고
    • Oscillating microbial dynamics driven by small populations, limited nutrient supply and high death rates
    • Khatri B.B.S., Free A., Allen R.R.J. Oscillating microbial dynamics driven by small populations, limited nutrient supply and high death rates. J Theor Biol 2012, 314:120-129.
    • (2012) J Theor Biol , vol.314 , pp. 120-129
    • Khatri, B.B.S.1    Free, A.2    Allen, R.R.J.3
  • 36
    • 51349112344 scopus 로고    scopus 로고
    • Network relationships of bacteria in a stable mixed culture
    • Kato S., Haruta S., Cui Z.J., Ishii M., Igarashi Y. Network relationships of bacteria in a stable mixed culture. Microb Ecol 2008, 56:403-411.
    • (2008) Microb Ecol , vol.56 , pp. 403-411
    • Kato, S.1    Haruta, S.2    Cui, Z.J.3    Ishii, M.4    Igarashi, Y.5
  • 39
    • 79952164230 scopus 로고    scopus 로고
    • Microdroplet-enabled highly parallel co-cultivation of microbial communities
    • Park J., Kerner A., Burns M.a., Lin X.N. Microdroplet-enabled highly parallel co-cultivation of microbial communities. PLoS ONE 2011, 6:e17019.
    • (2011) PLoS ONE , vol.6
    • Park, J.1    Kerner, A.2    Burns, M.3    Lin, X.N.4
  • 42
    • 84867746452 scopus 로고    scopus 로고
    • Metabolic specialization and the assembly of microbial communities
    • Johnson D.R., Goldschmidt F., Lilja E.E., Ackermann M. Metabolic specialization and the assembly of microbial communities. ISME J 2012, 6:1985-1991.
    • (2012) ISME J , vol.6 , pp. 1985-1991
    • Johnson, D.R.1    Goldschmidt, F.2    Lilja, E.E.3    Ackermann, M.4
  • 43
    • 49049105130 scopus 로고    scopus 로고
    • Engineering microbial consortia: a new frontier in synthetic biology
    • Brenner K., You L., Arnold F.H. Engineering microbial consortia: a new frontier in synthetic biology. Trends Biotechnol 2008, 26:483-489.
    • (2008) Trends Biotechnol , vol.26 , pp. 483-489
    • Brenner, K.1    You, L.2    Arnold, F.H.3
  • 44
    • 84865759667 scopus 로고    scopus 로고
    • Engineering ecosystems and synthetic ecologies
    • Mee M.T., Wang H.H. Engineering ecosystems and synthetic ecologies. Mol Biosyst 2012, 8:2470-2483.
    • (2012) Mol Biosyst , vol.8 , pp. 2470-2483
    • Mee, M.T.1    Wang, H.H.2
  • 45
    • 84882715874 scopus 로고    scopus 로고
    • Genetic engineering of multispecies microbial cell factories as an alternative for bioenergy production
    • Ortiz-Marquez J.C.F., Do Nascimento M., Zehr J.P., Curatti L. Genetic engineering of multispecies microbial cell factories as an alternative for bioenergy production. Trends Biotechnol 2013, 31:521-529.
    • (2013) Trends Biotechnol , vol.31 , pp. 521-529
    • Ortiz-Marquez, J.C.F.1    Do Nascimento, M.2    Zehr, J.P.3    Curatti, L.4
  • 46
    • 84883326386 scopus 로고    scopus 로고
    • Design and characterization of synthetic fungal-bacterial consortia for direct production of isobutanol from cellulosic biomass
    • Minty J.J., Singer M.E., Scholz S.A., Bae C.-H., Ahn J.-H., Foster C.E., Liao J.C., Lin X.N. Design and characterization of synthetic fungal-bacterial consortia for direct production of isobutanol from cellulosic biomass. Proc Natl Acad Sci U S A 2013, 110:14592-14597.
    • (2013) Proc Natl Acad Sci U S A , vol.110 , pp. 14592-14597
    • Minty, J.J.1    Singer, M.E.2    Scholz, S.A.3    Bae, C.-H.4    Ahn, J.-H.5    Foster, C.E.6    Liao, J.C.7    Lin, X.N.8
  • 49
    • 0018461781 scopus 로고
    • Complete degradation of carbohydrate to carbon dioxide and methane by syntrophic cultures of Acetobacterium woodii and Methanosarcina barkeri
    • Winter J., Wolfe R.S. Complete degradation of carbohydrate to carbon dioxide and methane by syntrophic cultures of Acetobacterium woodii and Methanosarcina barkeri. Arch Microbiol 1979, 121:97-102.
    • (1979) Arch Microbiol , vol.121 , pp. 97-102
    • Winter, J.1    Wolfe, R.S.2
  • 50
    • 0017409091 scopus 로고
    • Growth of desulfovibrio in lactate or ethanol media low in sulfate in association with H2-utilizing methanogenic bacteria
    • Bryant M., Campbell L. Growth of desulfovibrio in lactate or ethanol media low in sulfate in association with H2-utilizing methanogenic bacteria. Appl Environ Microbiol 1977, 33:1162-1169.
    • (1977) Appl Environ Microbiol , vol.33 , pp. 1162-1169
    • Bryant, M.1    Campbell, L.2


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