메뉴 건너뛰기




Volumn 10, Issue 6, 2015, Pages

Insights into Penicillium roqueforti morphological and genetic diversity

Author keywords

[No Author keywords available]

Indexed keywords

BETA TUBULIN; DNA FRAGMENT; MICROSATELLITE DNA;

EID: 84939208269     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0129849     Document Type: Article
Times cited : (45)

References (88)
  • 1
    • 0004152299 scopus 로고
    • The fungal dimension of biodiversity: Magnitude, significance, and conservation
    • Hawksworth DL. The fungal dimension of biodiversity: magnitude, significance, and conservation. Mycol Res. 1991;95:641-655. doi: 10.1016/S0953-7562 (09) 80810-1
    • (1991) Mycol Res. , vol.95 , pp. 641-655
    • Hawksworth, D.L.1
  • 2
    • 82455212877 scopus 로고    scopus 로고
    • Three reasons to re-evaluate fungal diversity "on Earth and in the ocean"
    • Bass D, Richards TA. Three reasons to re-evaluate fungal diversity "on Earth and in the ocean. " Fungal Biol Rev. 2011;25:159-164. doi: 10.1016/j.fbr.2011.10.003
    • (2011) Fungal Biol Rev. , vol.25 , pp. 159-164
    • Bass, D.1    Richards, T.A.2
  • 4
    • 84892149592 scopus 로고    scopus 로고
    • Multiple recent horizontal transfers of a large genomic region in cheese making fungi
    • Cheeseman K, Ropars J, Renault P, Dupont J, Gouzy J, Branca A, et al. Multiple recent horizontal transfers of a large genomic region in cheese making fungi. NatCommun. 2014;5. doi: 10.1038/ncomms3876
    • (2014) NatCommun. , pp. 5
    • Cheeseman, K.1    Ropars, J.2    Renault, P.3    Dupont, J.4    Gouzy, J.5    Branca, A.6
  • 5
    • 33947295962 scopus 로고
    • Microbially induced flavors and fermented foods. Flavor in fermented dairy products
    • Sandine WE, Elliker PR. Microbially induced flavors and fermented foods. Flavor in fermented dairy products. J Agric Food Chem. 1970;18:557-562. doi: 10.1021/jf60170a023
    • (1970) J Agric Food Chem. , vol.18 , pp. 557-562
    • Sandine, W.E.1    Elliker, P.R.2
  • 7
    • 84872921649 scopus 로고    scopus 로고
    • Earliest evidence for cheese making in the sixth millennium bc in northern Europe
    • 23235824
    • Salque M, Bogucki PI, Pyzel J, Sobkowiak-Tabaka I, Grygiel R, Szmyt M, et al. Earliest evidence for cheese making in the sixth millennium bc in northern Europe. Nature. 2013;493:522-525. doi: 10. 1038/nature11698 PMID: 23235824
    • (2013) Nature. , vol.493 , pp. 522-525
    • Salque, M.1    Bogucki, P.I.2    Pyzel, J.3    Sobkowiak-Tabaka, I.4    Grygiel, R.5    Szmyt, M.6
  • 8
    • 77957150968 scopus 로고    scopus 로고
    • Cheese: An overview
    • Fox PF, McSweeney PLH, Cogan TM, Guinee TP, editors, 3rded. London: Elsevier Academic Press
    • Fox PF, McSweeney PLH. Cheese: An Overview. In: Fox PF, McSweeney PLH, Cogan TM, Guinee TP, editors. Cheese: Chemistry, Physics and Microbiology. 3rded. London: Elsevier Academic Press; 2004. pp. 1-18.
    • (2004) Cheese: Chemistry, Physics and Microbiology , pp. 1-18
    • Fox, P.F.1    McSweeney, P.L.H.2
  • 10
    • 0342895581 scopus 로고
    • Rodez/Paris: Perspectives Aveyronnaises/Montalba
    • Dumay R. Le Roquefort. Rodez/Paris: Perspectives Aveyronnaises/Montalba; 1982.
    • (1982) Le Roquefort
    • Dumay, R.1
  • 14
    • 85042843252 scopus 로고    scopus 로고
    • Yeasts and Molds: Penicillium roqueforti
    • Fuquay JW, editor, San Diego: Academic Press
    • Abbas A, Dobson ADW. Yeasts and Molds: Penicillium roqueforti. In: Fuquay JW, editor. Encyclopedia of Dairy Sciences (Second Edition). San Diego: Academic Press; 2011. pp. 772-775. Available: http://www.sciencedirect.com/science/article/pii/B9780123744074003630
    • (2011) Encyclopedia of Dairy Sciences (Second Edition) , pp. 772-775
    • Abbas, A.1    Dobson, A.D.W.2
  • 16
    • 84937874496 scopus 로고    scopus 로고
    • Induction of sexual reproduction and genetic diversity in the cheese fungus Penicillium roqueforti
    • 24822078
    • Ropars J, López-Villavicencio M, Dupont J, Snirc A, Gillot G, Coton M, et al. Induction of sexual reproduction and genetic diversity in the cheese fungus Penicillium roqueforti. Evol Appl. 2014;7:433-441. doi: 10.1111/eva.12140 PMID: 24822078
    • (2014) Evol Appl. , vol.7 , pp. 433-441
    • Ropars, J.1    López-Villavicencio, M.2    Dupont, J.3    Snirc, A.4    Gillot, G.5    Coton, M.6
  • 18
    • 33947250760 scopus 로고    scopus 로고
    • Phylogenetic evidence of host-specific cryptic species in the anther smut fungus
    • Le Gac M, Hood ME, Fournier E, Giraud T. Phylogenetic evidence of host-specific cryptic species in the anther smut fungus. Evol Int J Org Evol. 2007;61:15-26. doi: 10.1111/j.1558-5646.2007.00002.x
    • (2007) Evol Int J Org Evol. , vol.61 , pp. 15-26
    • Le Gac, M.1    Hood, M.E.2    Fournier, E.3    Giraud, T.4
  • 19
    • 34249875966 scopus 로고    scopus 로고
    • Incipient speciation by divergent adaptation and antagonistic epistasis in yeast
    • 17538619
    • Dettman JR, Sirjusingh C, Kohn LM, Anderson JB. Incipient speciation by divergent adaptation and antagonistic epistasis in yeast. Nature. 2007;447:585-588. doi: 10.1038/nature05856 PMID: 17538619
    • (2007) Nature. , vol.447 , pp. 585-588
    • Dettman, J.R.1    Sirjusingh, C.2    Kohn, L.M.3    Anderson, J.B.4
  • 20
    • 84869812764 scopus 로고    scopus 로고
    • Sex in cheese: Evidence for sexuality in the fungus Penicillium roqueforti
    • 23185400
    • Ropars J, Dupont J, Fontanillas E, Rodrîguezdela Vega RC, Malagnac F, Coton M, et al. Sex in cheese: evidence for sexuality in the fungus Penicillium roqueforti. PLoSONE. 2012;7:e49665. doi: 10.1371/journal.pone.0049665 PMID: 23185400
    • (2012) PLoSONE. , vol.7 , pp. e49665
    • Ropars, J.1    Dupont, J.2    Fontanillas, E.3    Rodrîguezdela Vega, R.C.4    Malagnac, F.5    Coton, M.6
  • 21
    • 65649131928 scopus 로고    scopus 로고
    • Gene tree discordance, phylogenetic inference and the multispecies coalescent
    • 19307040
    • Degnan JH, Rosenberg NA. Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends Ecol Evol. 2009;24:332-340. doi: 10.1016/j.tree.2009.01.009 PMID: 19307040
    • (2009) Trends Ecol Evol. , vol.24 , pp. 332-340
    • Degnan, J.H.1    Rosenberg, N.A.2
  • 22
    • 70450233546 scopus 로고    scopus 로고
    • Estimating species trees: Methods of phylogenetic analysis when there is incongruence across genes
    • 20525600
    • Knowles LL. Estimating species trees: methods of phylogenetic analysis when there is incongruence across genes. Syst Biol. 2009;58:463-467. doi: 10.1093/sysbio/syp061 PMID: 20525600
    • (2009) Syst Biol. , vol.58 , pp. 463-467
    • Knowles, L.L.1
  • 25
    • 0003543422 scopus 로고
    • 2nd ed. CSIRO Food Research Laboratory, P. O. Box 52, North Ryde, N. S. W. 2113, Australia: Commonwealth Scientific and Industrial Research Organization, Division of Food Processing
    • Pitt JI. A Laboratory Guide to Common Penicillium Species. 2nd ed. CSIRO Food Research Laboratory, P. O. Box 52, North Ryde, N. S. W. 2113, Australia: Commonwealth Scientific and Industrial Research Organization, Division of Food Processing; 1988.
    • (1988) A Laboratory Guide to Common Penicillium Species
    • Pitt, J.I.1
  • 26
    • 66149157294 scopus 로고    scopus 로고
    • SAS Institute Inc. Cary, North Carolina
    • Institute SAS. JMP. Version 7. SAS Institute Inc. Cary, North Carolina; 2007.
    • (2007) JMP. Version 7
    • Institute SAS1
  • 27
    • 0028969372 scopus 로고
    • Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous Ascomycetes
    • 7747954
    • Glass NL, Donaldson GC. Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous Ascomycetes. Appl Environ Microbiol. 1995;61:1323-1330. PMID: 7747954
    • (1995) Appl Environ Microbiol. , vol.61 , pp. 1323-1330
    • Glass, N.L.1    Donaldson, G.C.2
  • 29
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes forphylogenetics
    • Innis M, Gelfand D, Shinsky J, White T, editors, New-York: Academic Press
    • White T, Bruns T, Lee S, Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes forphylogenetics. In: Innis M, Gelfand D, Shinsky J, White T, editors. PCR Protocols: A Guide to Methods and Applications. New-York: Academic Press; 1990. pp. 315-322.
    • (1990) PCR Protocols: A Guide to Methods and Applications , pp. 315-322
    • White, T.1    Bruns, T.2    Lee, S.3    Taylor, J.4
  • 30
    • 0001485434 scopus 로고
    • Polymerase Chain Reaction (PCR) primers for amplifying and sequencing nuclear 18s rDNAfrom lichenized fungi
    • Gargas A, Taylor JW. Polymerase Chain Reaction (PCR) primers for amplifying and sequencing nuclear 18s rDNAfrom lichenized fungi. Mycologia. 1992;84:589. doi: 10.2307/3760327
    • (1992) Mycologia. , vol.84 , pp. 589
    • Gargas, A.1    Taylor, J.W.2
  • 31
    • 0036395692 scopus 로고    scopus 로고
    • Phylogeny of the Gyalectales and Ostropales (Ascomycota, Fungi): Among and within order relationships based on nuclear ribosomal RNA small and large subunits
    • 12383757
    • Kauff F, Lutzoni F. Phylogeny of the Gyalectales and Ostropales (Ascomycota, Fungi): among and within order relationships based on nuclear ribosomal RNA small and large subunits. Mol Phylogenet Evol. 2002;25:138-156. doi: 10.1016/S1055-7903 (02) 00214-2 PMID: 12383757
    • (2002) Mol Phylogenet Evol. , vol.25 , pp. 138-156
    • Kauff, F.1    Lutzoni, F.2
  • 32
    • 0025374564 scopus 로고
    • Rapid genetic identification and mapping of enzymatically amplified ribosomal DNAfrom several Cryptococcus species
    • 2376561
    • Vilgalys R, Hester M. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNAfrom several Cryptococcus species. J Bacteriol. 1990;172:4238-4246. PMID: 2376561
    • (1990) J Bacteriol. , vol.172 , pp. 4238-4246
    • Vilgalys, R.1    Hester, M.2
  • 33
    • 0027995128 scopus 로고
    • Taxonomy and phylogeny of Gliocladium analysed from nuclear large subunit ribosomal DNA sequences
    • Rehner SA, Samuels GJ. Taxonomy and phylogeny of Gliocladium analysed from nuclear large subunit ribosomal DNA sequences. Mycol Res. 1994;98:625-634. doi: 10.1016/S0953-7562 (09) 80409-7
    • (1994) Mycol Res. , vol.98 , pp. 625-634
    • Rehner, S.A.1    Samuels, G.J.2
  • 34
    • 84255189126 scopus 로고    scopus 로고
    • Phylogeny of Penicillium and the segregation of Trichocomaceae into three families
    • 22308045
    • Houbraken J, Samson RA. Phylogeny of Penicillium and the segregation of Trichocomaceae into three families. Stud Mycol. 2011;70:1-51. doi: 10.3114/sim.2011.70.01 PMID: 22308045
    • (2011) Stud Mycol. , vol.70 , pp. 1-51
    • Houbraken, J.1    Samson, R.A.2
  • 35
    • 0032750944 scopus 로고    scopus 로고
    • Phylogenetic relationships among Ascomycetes: Evidence from an RNA polymerase II subunit
    • 10605121
    • Liu YJ, Whelen S, Hall BD. Phylogenetic relationships among Ascomycetes: evidence from an RNA polymerase II subunit. Mol Biol Evol. 1999;16:1799-1808. PMID: 10605121
    • (1999) Mol Biol Evol. , vol.16 , pp. 1799-1808
    • Liu, Y.J.1    Whelen, S.2    Hall, B.D.3
  • 36
    • 2542464365 scopus 로고    scopus 로고
    • Multilocus DNA sequence analysis shows that Penicillium biourgeianum is a distinct species closely related to P. Brevicompactum and P. Olsonii
    • 15209283
    • Peterson SW. Multilocus DNA sequence analysis shows that Penicillium biourgeianum is a distinct species closely related to P. brevicompactum and P. olsonii. Mycol Res. 2004;108:434-440. doi: 10. 1017/S0953756204009761 PMID: 15209283
    • (2004) Mycol Res. , vol.108 , pp. 434-440
    • Peterson, S.W.1
  • 37
    • 0032537449 scopus 로고    scopus 로고
    • MCM proteins: Evolution, properties, and role in DNA replication
    • 9689912
    • Kearsey SE, Labib K. MCM proteins: evolution, properties, and role in DNA replication. Biochim BiophysActa. 1998;1398:113-136. PMID: 9689912
    • (1998) Biochim BiophysActa. , vol.1398 , pp. 113-136
    • Kearsey, S.E.1    Labib, K.2
  • 38
    • 0034844836 scopus 로고    scopus 로고
    • Bms1p, a novel GTP-binding protein, and the related Tsr1p are required for distinct steps of 40S ribosome biogenesis in yeast
    • 11565749
    • Gelperin D, Horton L, Beckman J, Hensold J, Lemmon SK. Bms1p, a novel GTP-binding protein, and the related Tsr1p are required for distinct steps of 40S ribosome biogenesis in yeast. RNA. 2001;7:1268-1283. PMID: 11565749
    • (2001) RNA , vol.7 , pp. 1268-1283
    • Gelperin, D.1    Horton, L.2    Beckman, J.3    Hensold, J.4    Lemmon, S.K.5
  • 39
    • 17144436155 scopus 로고    scopus 로고
    • The ribosomal protein Rps15p is required for nuclear exit of the 40S subunit precursors in yeast
    • 15167894
    • Léger-Silvestre I, Milkereit P, Ferreira-Cerca S, Saveanu C, Rousselle J-C, Choesmel V, et al. The ribosomal protein Rps15p is required for nuclear exit of the 40S subunit precursors in yeast. EMBO J. 2004;23:2336-2347. doi: 10.1038/sj.emboj.7600252 PMID: 15167894
    • (2004) EMBO J. , vol.23 , pp. 2336-2347
    • Léger-Silvestre, I.1    Milkereit, P.2    Ferreira-Cerca, S.3    Saveanu, C.4    Rousselle, J.-C.5    Choesmel, V.6
  • 40
    • 0027992757 scopus 로고
    • Cystosolic chaperonin subunits have a conserved ATPase domain but diverged polypeptide-binding domains
    • 7846767
    • Kim S, Willison KR, Horwich AL. Cystosolic chaperonin subunits have a conserved ATPase domain but diverged polypeptide-binding domains. Trends Biochem Sci. 1994;19:543-548. doi: 10.1016/0968-0004 (94) 90058-2 PMID: 7846767
    • (1994) Trends Biochem Sci. , vol.19 , pp. 543-548
    • Kim, S.1    Willison, K.R.2    Horwich, A.L.3
  • 41
    • 0029884589 scopus 로고    scopus 로고
    • Review: The ccteukaryotic chaperonin subunits of saccharomyces cerevisiae and other yeasts
    • 8771707
    • Stoldt V, Rademacher F, Kehren V, Ernst JF, Pearce DA, Sherman F. Review: The Ccteukaryotic chaperonin subunits of Saccharomyces cerevisiae and other yeasts. Yeast. 1996;12:523-529. doi: 10. 1002/(SICI) 1097-0061 (199605) 12:6<523::AID-YEA962>3.0.CO;2-C PMID: 8771707
    • (1996) Yeast. , vol.12 , pp. 523-529
    • Stoldt, V.1    Rademacher, F.2    Kehren, V.3    Ernst, J.F.4    Pearce, D.A.5    Sherman, F.6
  • 42
    • 33646541072 scopus 로고    scopus 로고
    • Polyphasic taxonomy of Aspergillus fumigatus and related species
    • 16722222
    • Hong S-B, Go S-J, Shin H-D, Frisvad JC, Samson RA. Polyphasic taxonomy of Aspergillus fumigatus and related species. Mycologia. 2005;97:1316-1329. doi: 10.3852/mycologia.97.6.1316 PMID: 16722222
    • (2005) Mycologia. , vol.97 , pp. 1316-1329
    • Hong, S.-B.1    Go, S.-J.2    Shin, H.-D.3    Frisvad, J.C.4    Samson, R.A.5
  • 43
    • 75149170450 scopus 로고    scopus 로고
    • New primers for promising single-copy genes in fungal phylogenetics and systematics
    • 20198159
    • Schmitt I, Crespo A, Divakar PK, Fankhauser JD, Herman-Sackett E, Kalb K, et al. New primers for promising single-copy genes in fungal phylogenetics and systematics. Persoonia. 2009;23:35-40. doi: 10.3767/003158509X470602 PMID: 20198159
    • (2009) Persoonia. , vol.23 , pp. 35-40
    • Schmitt, I.1    Crespo, A.2    Divakar, P.K.3    Fankhauser, J.D.4    Herman-Sackett, E.5    Kalb, K.6
  • 44
    • 84857996218 scopus 로고    scopus 로고
    • Rasamsonia, a new genus comprising thermotolerant and thermophilic Talaromyces and Geosmithia species
    • 21965082
    • Houbraken J, Spierenburg H, Frisvad JC. Rasamsonia, a new genus comprising thermotolerant and thermophilic Talaromyces and Geosmithia species. Antonie Van Leeuwenhoek. 2012;101:403-421. doi: 10.1007/s10482-011-9647-1 PMID: 21965082
    • (2012) Antonie van Leeuwenhoek. , vol.101 , pp. 403-421
    • Houbraken, J.1    Spierenburg, H.2    Frisvad, J.C.3
  • 45
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
    • 19346325
    • Librado P, Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics. 2009;25:1451-1452. doi: 10.1093/bioinformatics/btp187 PMID: 19346325
    • (2009) Bioinformatics. , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 46
    • 34447321852 scopus 로고    scopus 로고
    • Enhancements and modifications of primer design program Primer3
    • 17379693
    • Koressaar T, Remm M. Enhancements and modifications of primer design program Primer3. Bioinformatics. 2007;23:1289-1291. doi: 10.1093/bioinformatics/btm091 PMID: 17379693
    • (2007) Bioinformatics. , vol.23 , pp. 1289-1291
    • Koressaar, T.1    Remm, M.2
  • 49
    • 84875619226 scopus 로고    scopus 로고
    • MAFFT multiple sequence alignment software version 7: Improvements in performance and usability
    • 23329690
    • Katoh K, Standley DM. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 2013;30:772-780. doi: 10.1093/molbev/mst010 PMID: 23329690
    • (2013) Mol Biol Evol. , vol.30 , pp. 772-780
    • Katoh, K.1    Standley, D.M.2
  • 50
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • 14530136
    • Guindon S, Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 2003;52:696-704. doi: 10.1080/10635150390235520 PMID: 14530136
    • (2003) Syst Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 51
    • 84864453108 scopus 로고    scopus 로고
    • JModelTest 2: More models, new heuristics and parallel computing
    • 22847109
    • Darriba D, Taboada GL, Doallo R, Posada D. jModelTest 2: more models, new heuristics and parallel computing. Nat Methods. 2012;9:772-772. doi: 10.1038/nmeth.2109 PMID: 22847109
    • (2012) Nat Methods. , vol.9 , pp. 772-772
    • Darriba, D.1    Taboada, G.L.2    Doallo, R.3    Posada, D.4
  • 53
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • 11524383
    • Huelsenbeck JP, Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics. 2001;17:754-755. doi: 10.1093/bioinformatics/17.8.754 PMID: 11524383
    • (2001) Bioinformatics. , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 54
    • 0041386108 scopus 로고    scopus 로고
    • MRBAYES3: Bayesian phylogenetic inference under mixed models
    • 12912839
    • Ronquist F, Huelsenbeck JP. MRBAYES3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 2003;19:1572-1574. doi: 10.1093/bioinformatics/btg180 PMID: 12912839
    • (2003) Bioinformatics. , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 55
    • 39149141072 scopus 로고    scopus 로고
    • AWTY (are we there yet?): A system for graphical exploration of MCMC convergence in Bayesian phylogenetics
    • 17766271
    • Nylander JAA, Wilgenbusch JC, Warren DL, Swofford DL. AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics. 2008;24:581-583. doi: 10.1093/bioinformatics/btm388 PMID: 17766271
    • (2008) Bioinformatics. , vol.24 , pp. 581-583
    • Nylander, J.A.A.1    Wilgenbusch, J.C.2    Warren, D.L.3    Swofford, D.L.4
  • 56
    • 84989432221 scopus 로고
    • Testing significance of incongruence
    • Farris JS, Källersjö M, Kluge AG, Bult C. Testing significance of incongruence. Cladistics. 1994;10:315-319. doi: 10.1111/j.1096-0031.1994.tb00181.x
    • (1994) Cladistics. , vol.10 , pp. 315-319
    • Farris, J.S.1    Källersjö, M.2    Kluge, A.G.3    Bult, C.4
  • 58
    • 84868007353 scopus 로고    scopus 로고
    • Dendroscope 3: An interactive tool for rooted phylogenetic trees and networks
    • Huson DH, Scornavacca C. Dendroscope 3: an interactive tool for rooted phylogenetic trees and networks. SystBiol. 2012;0:1-7. doi: 10.1093/sysbio/sys062
    • (2012) SystBiol. , pp. 1-7
    • Huson, D.H.1    Scornavacca, C.2
  • 59
    • 34547852208 scopus 로고    scopus 로고
    • SciRoKo: A new tool for whole genome microsatellite search and investigation
    • 17463017
    • Kofler R, Schlötterer C, Lelley T. SciRoKo: a new tool for whole genome microsatellite search and investigation. Bioinformatics. 2007;23:1683-1685. doi: 10.1093/bioinformatics/btm157 PMID: 17463017
    • (2007) Bioinformatics. , vol.23 , pp. 1683-1685
    • Kofler, R.1    Schlötterer, C.2    Lelley, T.3
  • 60
    • 84865859193 scopus 로고    scopus 로고
    • Microsatellites for microbiologists
    • 22958530
    • Sweet MJ, Scriven LA, Singleton I. Microsatellites for microbiologists. AdvAppl Microbiol. 2012;81:169-207. doi: 10.1016/B978-0-12-394382-8.00005-8 PMID: 22958530
    • (2012) AdvAppl Microbiol. , vol.81 , pp. 169-207
    • Sweet, M.J.1    Scriven, L.A.2    Singleton, I.3
  • 61
    • 77949515434 scopus 로고    scopus 로고
    • QDD: A user-friendly program to select microsatellite markers and design primers from large sequencing projects
    • Meglécz E, Costedoat C, Dubut V, Gilles A, Malausa T, Pech N, et al. QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects. Bioinforma Oxf Engl. 2010;26:403-404. doi: 10.1093/bioinformatics/btp670
    • (2010) Bioinforma Oxf Engl. , vol.26 , pp. 403-404
    • Meglécz, E.1    Costedoat, C.2    Dubut, V.3    Gilles, A.4    Malausa, T.5    Pech, N.6
  • 62
    • 0000262278 scopus 로고
    • GENEPOP (version 1.2): Population genetics software for exact tests and ecumenicism
    • Raymond M, Rousset F. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J Hered. 1995;86:248-249.
    • (1995) J Hered. , vol.86 , pp. 248-249
    • Raymond, M.1    Rousset, F.2
  • 63
    • 36849080837 scopus 로고    scopus 로고
    • GENEPOP'007: A complete re-implementation of the GENEPOP software for Windows and Linux
    • 21585727
    • Rousset F. GENEPOP'007: a complete re-implementation of the GENEPOP software for Windows and Linux. Mol Ecol Resour. 2008;8:103-106. doi: 10.1111/j.1471-8286.2007.01931.x PMID: 21585727
    • (2008) Mol Ecol Resour. , vol.8 , pp. 103-106
    • Rousset, F.1
  • 64
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • 10835412
    • Pritchard JK, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics. 2000;155:945-959. PMID: 10835412
    • (2000) Genetics. , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 65
    • 34547861256 scopus 로고    scopus 로고
    • CLUMPP: A cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
    • 17485429
    • Jakobsson M, Rosenberg NA. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics. 2007;23:1801-1806. doi: 10.1093/bioinformatics/btm233 PMID: 17485429
    • (2007) Bioinformatics. , vol.23 , pp. 1801-1806
    • Jakobsson, M.1    Rosenberg, N.A.2
  • 66
    • 1342331102 scopus 로고    scopus 로고
    • DISTRUCT: A program for the graphical display of population structure
    • Rosenberg NA. DISTRUCT: a program for the graphical display of population structure. Mol Ecol Notes. 2004;4:137-138. doi: 10.1046/j.1471-8286.2003.00566.x
    • (2004) Mol Ecol Notes. , vol.4 , pp. 137-138
    • Rosenberg, N.A.1
  • 67
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study
    • 15969739
    • Evanno G, Regnaut S, Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol. 2005;14:2611-2620. doi: 10.1111/j.1365-294X.2005. 02553.x PMID: 15969739
    • (2005) Mol Ecol. , vol.14 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 68
    • 84882759440 scopus 로고    scopus 로고
    • STRUCTURE HARVESTER: A website and program for visualizing STRUC-TURE output and implementing the Evanno method
    • Earl DA, Von Holdt BM. STRUCTURE HARVESTER: a website and program for visualizing STRUC-TURE output and implementing the Evanno method. Conserv Genet Resour. 2012;4:359-361. doi:10.1007/s12686-011-9548-7
    • (2012) Conserv Genet Resour. , vol.4 , pp. 359-361
    • Earl, D.A.1    Von Holdt, B.M.2
  • 69
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNAhaplotypes: Application to human mitochondrial DNA restriction data
    • 1644282
    • Excoffier L, Smouse PE, Quattro JM. Analysis of molecular variance inferred from metric distances among DNAhaplotypes: application to human mitochondrial DNA restriction data. Genetics. 1992;131:479-491. PMID: 1644282
    • (1992) Genetics. , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 70
    • 9644266571 scopus 로고    scopus 로고
    • GENOTYPE and GENODIVE: Two programs for the analysis of genetic diversity of asexual organisms
    • Meirmans PG, Van Tienderen PH. GENOTYPE and GENODIVE: two programs for the analysis of genetic diversity of asexual organisms. Mol Ecol Notes. 2004;4:792-794. doi: 10.1111/j.1471-8286. 2004.00770.x
    • (2004) Mol Ecol Notes. , vol.4 , pp. 792-794
    • Meirmans, P.G.1    Van Tienderen, P.H.2
  • 72
    • 6044276713 scopus 로고    scopus 로고
    • Using phylogenetic species recognition to delimit species boundaries within Lasiosphaeria
    • 21148930
    • Miller AN, Huhndorf SM. Using phylogenetic species recognition to delimit species boundaries within Lasiosphaeria. Mycologia. 2004;96:1106-1127. PMID: 21148930
    • (2004) Mycologia. , vol.96 , pp. 1106-1127
    • Miller, A.N.1    Huhndorf, S.M.2
  • 73
    • 34249680236 scopus 로고    scopus 로고
    • Suitability of methods for species recognition in the Phialocephala fortinii-Acephala applanata species complex using DNA analysis
    • 17289408
    • Grünig CR, Brunner PC, Duò A, Sieber TN. Suitability of methods for species recognition in the Phialocephala fortinii-Acephala applanata species complex using DNA analysis. Fungal Genet Biol. 2007;44:773-788. doi: 10.1016/j.fgb.2006.12.008 PMID: 17289408
    • (2007) Fungal Genet Biol. , vol.44 , pp. 773-788
    • Grünig, C.R.1    Brunner, P.C.2    Duò, A.3    Sieber, T.N.4
  • 74
    • 67349212619 scopus 로고    scopus 로고
    • Multiple gene genealogies and phenotypic data reveal cryptic species of the Botryosphaeriaceae: A case study on the Neofusicoccum parvum/N. Ribis complex
    • 19152837
    • Pavlic D, Slippers B, Coutinho TA, Wingfield MJ. Multiple gene genealogies and phenotypic data reveal cryptic species of the Botryosphaeriaceae: a case study on the Neofusicoccum parvum/N. ribis complex. Mol Phylogenet Evol. 2009;51:259-268. doi: 10.1016/j.ympev. 2008.12.017 PMID: 19152837
    • (2009) Mol Phylogenet Evol. , vol.51 , pp. 259-268
    • Pavlic, D.1    Slippers, B.2    Coutinho, T.A.3    Wingfield, M.J.4
  • 75
    • 84255177083 scopus 로고    scopus 로고
    • Penicillium menonorum, a new species related to P
    • 22679596
    • Peterson SW, Orchard SS, Menon S. Penicillium menonorum, a new species related to P. pimiteouiense. IMA Fungus. 2011;2:121-125. doi: 10.5598/imafungus.2011.02.02.02 PMID: 22679596
    • (2011) Pimiteouiense. IMA Fungus. , vol.2 , pp. 121-125
    • Peterson, S.W.1    Orchard, S.S.2    Menon, S.3
  • 76
    • 84861676308 scopus 로고    scopus 로고
    • Molecular systematics in the genus Mucorwith special regards to species encountered in cheese
    • 22658314
    • Hermet A, Méheust D, Mounier J, Barbier G, Jany J-L. Molecular systematics in the genus Mucorwith special regards to species encountered in cheese. Fungal Biol. 2012;116:692-705. doi: 10.1016/j. funbio.2012.04.002 PMID: 22658314
    • (2012) Fungal Biol. , vol.116 , pp. 692-705
    • Hermet, A.1    Méheust, D.2    Mounier, J.3    Barbier, G.4    Jany, J.-L.5
  • 77
    • 84873180556 scopus 로고    scopus 로고
    • Phylogenetic species recognition reveals host-specific lineages among poplar rust fungi
    • 23147268
    • Vialle A, Feau N, Frey P, Bernier L, Hamelin RC. Phylogenetic species recognition reveals host-specific lineages among poplar rust fungi. Mol Phylogenet Evol. 2013;66:628-644. doi: 10.1016/j.ympev. 2012.10.021 PMID: 23147268
    • (2013) Mol Phylogenet Evol. , vol.66 , pp. 628-644
    • Vialle, A.1    Feau, N.2    Frey, P.3    Bernier, L.4    Hamelin, R.C.5
  • 78
    • 0016220238 scopus 로고
    • The hitch-hiking effect of a favourable gene
    • 4407212
    • Smith JM, Haigh J. The hitch-hiking effect of a favourable gene. Genet Res. 1974;23:23-35. doi: 10. 1017/S0016672300014634 PMID: 4407212
    • (1974) Genet Res. , vol.23 , pp. 23-35
    • Smith, J.M.1    Haigh, J.2
  • 79
    • 77649260327 scopus 로고    scopus 로고
    • Population differentiation as a test for selective sweeps
    • 20086244
    • Chen H, Patterson N, Reich D. Population differentiation as a test for selective sweeps. Genome Res. 2010;20:393-402. doi: 10.1101/gr.100545.109 PMID: 20086244
    • (2010) Genome Res. , vol.20 , pp. 393-402
    • Chen, H.1    Patterson, N.2    Reich, D.3
  • 80
    • 0024372736 scopus 로고
    • The "hitchhiking effect" revisited
    • 2612899
    • Kaplan NL, Hudson RR, Langley CH. The "hitchhiking effect" revisited. Genetics. 1989;123:887-899. PMID: 2612899
    • (1989) Genetics. , vol.123 , pp. 887-899
    • Kaplan, N.L.1    Hudson, R.R.2    Langley, C.H.3
  • 82
    • 62649089109 scopus 로고    scopus 로고
    • Population genomics of domestic and wild yeasts
    • 19212322
    • Liti G, Carter DM, Moses AM, Warringer J, Parts L, James SA, et al. Population genomics of domestic and wild yeasts. Nature. 2009;458:337-341. doi: 10.1038/nature07743 PMID: 19212322
    • (2009) Nature. , vol.458 , pp. 337-341
    • Liti, G.1    Carter, D.M.2    Moses, A.M.3    Warringer, J.4    Parts, L.5    James, S.A.6
  • 83
    • 33645096818 scopus 로고    scopus 로고
    • Evidence for domesticated and wild populations of saccharomyces cerevisiae
    • Fay JC, Benavides JA. Evidence for Domesticated and Wild Populations of Saccharomyces cerevisiae. PLoS Genet. 2005;1:e5. doi: 10.1371/journal.pgen. 0010005
    • (2005) PLoS Genet. , vol.1 , pp. e5
    • Fay, J.C.1    Benavides, J.A.2
  • 84
    • 34248192358 scopus 로고    scopus 로고
    • Bread, beer and wine: Saccharomyces cerevisiae diversity reflects human history
    • 17498234
    • Legras J-L, Merdinoglu D, Cornuet J-M, Karst F. Bread, beer and wine: Saccharomyces cerevisiae diversity reflects human history. Mol Ecol. 2007;16:2091-2102. doi: 10.1111/j.1365-294X.2007.03266.x PMID: 17498234
    • (2007) Mol Ecol. , vol.16 , pp. 2091-2102
    • Legras, J.-L.1    Merdinoglu, D.2    Cornuet, J.-M.3    Karst, F.4
  • 85
    • 79952420028 scopus 로고    scopus 로고
    • Bread, beer and wine: Yeast domestication in the Saccharomyces sensu stricto complex
    • 21377618
    • Sicard D, Legras J-L. Bread, beer and wine: yeast domestication in the Saccharomyces sensu stricto complex. C R Biol. 2011;334:229-236. doi: 10.1016/j.crvi.2010.12.016 PMID: 21377618
    • (2011) C R Biol. , vol.334 , pp. 229-236
    • Sicard, D.1    Legras, J.-L.2
  • 86
    • 70349515584 scopus 로고    scopus 로고
    • Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118
    • 19805302
    • Novo M, Bigey F, Beyne E, Galeote V, Gavory F, Mallet S, et al. Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118. Proc Natl Acad Sci. 2009;106:16333-16338. doi: 10.1073/pnas.0904673106 PMID: 19805302
    • (2009) Proc Natl Acad Sci. , vol.106 , pp. 16333-16338
    • Novo, M.1    Bigey, F.2    Beyne, E.3    Galeote, V.4    Gavory, F.5    Mallet, S.6
  • 87
    • 84864599461 scopus 로고    scopus 로고
    • The evolutionary imprint of domestication on genome variation and function of the filamentous fungus Aspergillus oryzae
    • 22795693
    • Gibbons JG, Salichos L, Slot JC, Rinker DC, McGary KL, King JG, et al. The evolutionary imprint of domestication on genome variation and function of the filamentous fungus Aspergillus oryzae. CurrBiol. 2012;22:1403-1409. doi: 10.1016/j.cub.2012.05.033 PMID: 22795693
    • (2012) CurrBiol. , vol.22 , pp. 1403-1409
    • Gibbons, J.G.1    Salichos, L.2    Slot, J.C.3    Rinker, D.C.4    McGary, K.L.5    King, J.G.6
  • 88
    • 84895008374 scopus 로고    scopus 로고
    • Fungal evolutionary genomics provides insight into the mechanisms of adaptive divergence in eukaryotes
    • 24341913
    • Gladieux P, Ropars J, Badouin H, Branca A, Aguileta G, De Vienne DM, et al. Fungal evolutionary genomics provides insight into the mechanisms of adaptive divergence in eukaryotes. Mol Ecol. 2014;23:753-773. doi: 10.1111/mec.12631 PMID: 24341913
    • (2014) Mol Ecol. , vol.23 , pp. 753-773
    • Gladieux, P.1    Ropars, J.2    Badouin, H.3    Branca, A.4    Aguileta, G.5    De Vienne, D.M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.