Bread, beer and wine: Yeast domestication in the Saccharomyces sensu stricto complex

Comptes Rendus - Biologies

Volumn 334, Issue 3, 2011, Pages 229-236

  Sicard, Delphine ^a   Legras, Jean Luc ^b  

^a UNIVERSITÉ PARIS SACLAY   (France)

^b SPO   (France)

Author keywords

Bakery; Brewery; Polyploidization; Selection; Speciation; nology

Indexed keywords

BREWING INDUSTRY; DOMESTICATION; ETHANOL; FERMENTATION; FOOD PROCESSING; HYBRIDIZATION; NATURAL SELECTION; POLYPLOIDY; SPECIATION (BIOLOGY); SUGAR; YEAST;

BEER; BREAD; DOMESTICATION; FERMENTATION; FOOD PROCESSING; FUNGAL GENE; GENE CLUSTER; GENE EXPRESSION; GENETIC DIFFERENCE; NONHUMAN; POLYPLOIDY; REVIEW; SACCHAROMYCES; SACCHAROMYCES SENSU STRICTO; WINE;

SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 79952420028     PISSN: 16310691     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.crvi.2010.12.016     Document Type: Short Survey

References (58)

1. L. Pasteur Mémoire sur la fermentation alcoolique Ann. Chim. Phys. 58 1860 323 426
2. P.E. McGovern, J. Zhang, J. Tang, Z. Zhang, G.R. Hall, R.A. Moreau, A. Nunez, E.D. Butrym, M.P. Richards, C.S. Wang, G. Cheng, Z. Zhao, and C.C. Wang Fermented beverages of pre- and proto-historic China Proc. Natl. Acad. Sci. USA 101 2004 17593 17598 (Pubitemid 40051931)
3. P. McGovern, M. Voigt, D. Glusker, and L. Exner Neolithic resinated wine Nature 381 1996 480 481
4. D. Samuel Investigation of ancient Egyptian baking and brewing methods by correlative microscopy Science 273 1996 488 490 (Pubitemid 26286447)
5. R. Arroyo-Garcia, L. Ruiz-Garcia, L. Bolling, R. Ocete, M.A. Lopez, C. Arnold, A. Ergul, G. Soylemezoglu, H.I. Uzun, F. Cabello, J. Ibanez, M.K. Aradhya, A. Atanassov, I. Atanassov, S. Balint, J.L. Cenis, L. Costantini, S. Goris-Lavets, M.S. Grando, B.Y. Klein, P.E. McGovern, D. Merdinoglu, I. Pejic, F. Pelsy, N. Primikirios, V. Risovannaya, K.A. Roubelakis-Angelakis, H. Snoussi, P. Sotiri, S. Tamhankar, P. This, L. Troshin, J.M. Malpica, F. Lefort, and J.M. Martinez-Zapater Multiple origins of cultivated grapevine (Vitis vinifera L. ssp. sativa) based on chloroplast DNA polymorphisms Mol. Ecol. 15 2006 3707 3714 (Pubitemid 44564279)
6. D. Zohary, and M. Hopf Domestication of plants in the Old World 3rd ed. 2000 Oxford University Press New York 151 159
7. P. This, T. Lacombe, and M.R. Thomas Historical origins and genetic diversity of wine grapes Trends Genet. 22 2006 511 519
8. S.M. Valamoti, M. Mangafa, C. Koukouli-Chrysanthaki, and D. Malamidou Grape-pressings from northern Greece: the earliest wine in the Aegean? Antiquity 81 2007 54 61 (Pubitemid 46485248)
9. P.E. McGovern, A. Mirzoian, and G.R. Hall Ancient Egyptian herbal wines Proc. Natl. Acad. Sci. USA 106 2009 7361 7366
10. M. Homan, Beer and its drinkers: an ancient Near Eastern lover story, Near Eastern Archaeology (2004) 84-95.
11. W.J. Darby, P. Ghalioungui, and L. Grivetti Food: the gift of Osiris 1977 Academic Press London
12. D. Samuel Bread in archeology Bread Ovens and Hearths of the Past 2002 Institut de sociologie Bruxelles
13. S. Delwen Bread in archeology Bread ovens and hearths of the past 2002 Institut de sociologie Bruxelles
14. A. Di Vora, and L. Castelletti Indagine preliminare sull'archeologia della vite (Vitis vinifera L.) in base ai caratteri diagnostici del vinacciolo Rivista Archeologica dell'Antica Provincia e Diocesi di Como 176 1995 333 358
15. F. Laubenheimer, and J.P. Brun La viticulture en Gaule Gallia 58 2001 1 260
16. I. Pretorius Tailoring wine yeast for the new millennium: novel approaches to the ancient art of winemaking Yeast 16 2000 675 729 (Pubitemid 30386786)
17. I.A. Hornsey History of beer and brewing RSC Paperbacks 2003 Cambridge UK
18. Y. Kodama, C.M. Kielland-Brandt, and J. Hansen Lager brewing yeast P. Sunnerhagen, P. Piskur, Comparative Genomics 2005 Springer-Verlag Berlin 145 164
19. J.P. Tamang, and G.H. Fleet Yeasts diversity in fermented foods and beverages T., Kunze Satyanarayana, Yeast Biotechnology: Diversity and Applications 2009 Springer Netherlands
20. C.P. Kurtzman, and C.J. Robnett Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences Antonie Van Leeuwenhoek 73 1998 331 371 (Pubitemid 28528723)
21. A.A. Andreasen, and T.J. Stier Anaerobic nutrition of Saccharomyces cerevisiae. I. Ergosterol requirement for growth in a defined medium J. Cell Physiol. 41 1953 23 36
22. J.T. Pronk, H. Yde Steensma, and J.P. Van Dijken Pyruvate metabolism in Saccharomyces cerevisiae Yeast 12 1996 1607 1633 (Pubitemid 27055830)
23. K. Moller, L. Olsson, and J. Piskur Ability for anaerobic growth is not sufficient for development of the petite phenotype in Saccharomyces kluyveri J. Bacteriol. 183 2001 2485 2489 (Pubitemid 32249756)
24. M. Johnston Feasting, fasting and fermenting. Glucose sensing in yeast and other cells Trends Genet. 15 1999 29 33 (Pubitemid 29207342)
25. J.M. Thomson, E.A. Gaucher, M.F. Burgan, D.W. De Kee, T. Li, J.P. Aris, and S.A. Benner Resurrecting ancestral alcohol dehydrogenases from yeast Nat. Genet. 37 2005 630 635 (Pubitemid 40770419)
26. M. Kellis, B.W. Birren, and E.S. Lander Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae Nature 428 2004 617 624 (Pubitemid 38524797)
27. G.C. Conant, and K.H. Wolfe Increased glycolytic flux as an outcome of whole-genome duplication in yeast Mol. Syst. Biol. 3 2007 129
28. E.S. Naumova, G.I. Naumov, I. Masneuf-Pomarede, M. Aigle, and D. Dubourdieu Molecular genetic study of introgression between Saccharomyces bayanus and S. cerevisiae Yeast 22 2005 1099 1115 (Pubitemid 41684142)
29. J.C. Fay, and J.A. Benavides Evidence for domesticated and wild populations of Saccharomyces cerevisiae PLoS Genet. 1 2005 66 71
30. A. Spor, S. Wang, C. Dillmann, D. de Vienne, D. Sicard, Ant and grasshopper life-history strategies in Saccharomyces cerevisiae, PLoS One 3 (2008) e1579.
31. W. Albertin, P. Marullo, M. Aigle, A. Bourgais, M. Bely, C. Dillmann, D. de Vienne, and D. Sicard Evidence for autotetraploidy associated with reproductive isolation in Saccharomyces cerevisiae: towards a new domesticated species J. Evol. Biol. 22 2009 2157 2170
32. J.L. Legras, D. Merdinoglu, J.M. Cornuet, and F. Karst Bread, beer and wine: Saccharomyces cerevisiae diversity reflects human history Mol. Ecol. 16 2007 2091 2102 (Pubitemid 46718913)
33. Y. Nakao, T. Kanamori, T. Itoh, Y. Kodama, S. Rainieri, N. Nakamura, T. Shimonaga, M. Hattori, and T. Ashikari Genome sequence of the lager brewing yeast, an interspecies hybrid DNA Res. 16 2009 115 129
34. O.U. Ezeronye, and J.L. Legras Genetic analysis of Saccharomyces cerevisiae strains isolated from palm wine in eastern Nigeria. Comparison with other African strains J. Appl. Microbiol. 106 2009 1569 1578
35. S. Diezmann, F.S. Dietrich, Saccharomyces cerevisiae: population divergence and resistance to oxidative stress in clinical, domesticated and wild isolates, PLoS One 4 (2009) e5317.
36. G. Liti, D.M. Carter, A.M. Moses, J. Warringer, L. Parts, S.A. James, R.P. Davey, I.N. Roberts, A. Burt, V. Koufopanou, I.J. Tsai, C.M. Bergman, D. Bensasson, M.J. O'Kelly, A. van Oudenaarden, D.B. Barton, E. Bailes, A.N. Nguyen, M. Jones, M.A. Quail,.I. Goodhead, S.S. Sims, F. Smith, A. Blomberg, R. Durbin, and E.J. Louis Population genomics of domestic and wild yeasts Nature 458 2009 337 341
37. J. Schacherer, J.A. Shapiro, D.M. Ruderfer, and L. Kruglyak Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae Nature 458 2009 342 345
38. A. Spor, T. Nidelet, J. Simon, A. Bourgais, D. de Vienne, and D. Sicard Niche-driven evolution of metabolic and life-history strategies in natural and domesticated populations of Saccharomyces cerevisiae BMC Evol. Biol. 9 2009 296
39. C. Thouvenin, Le Klevener de Heiligenstein Vin d'Alsace, JdM, 2005, 128 p.
40. P. Taberlet, L. Fumagalli, A.G. Wust-Saucy, and J.F. Cosson Comparative phylogeography and postglacial colonization routes in Europe Mol. Ecol. 7 1998 453 464 (Pubitemid 28226692)
41. B. Dunn, and G. Sherlock Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus Genome Res. 18 2008 1610 1623
42. G. Liti, A. Peruffo, S.A. James, I.N. Roberts, and E.J. Louis Inferences of evolutionary relationships from a population survey of LTR-retrotransposons and telomeric-associated sequences in the Saccharomyces sensu stricto complex Yeast 22 2005 177 192 (Pubitemid 40298148)
43. S. Rainieri, Y. Kodama, Y. Nakao, A. Pulvirenti, and P. Giudici The inheritance of mtDNA in lager brewing strains FEMS Yeast Res. 8 2008 586 596 (Pubitemid 351678646)
44. C. Belloch, R. Perez-Torrado, S.S. Gonzalez, J.E. Perez-Ortin, J. Garcia-Martinez, A. Querol, and E. Barrio Chimeric genomes of natural hybrids of Saccharomyces cerevisiae and Saccharomyces kudriavzevii Appl. Environ. Microbiol. 75 2009 2534 2544
45. S.S. Gonzalez, E. Barrio, and A. Querol Molecular characterization of new natural hybrids of Saccharomyces cerevisiae and S. kudriavzevii in brewing Appl. Environ. Microbiol. 74 2008 2314 2320 (Pubitemid 351555441)
46. S.S. Gonzalez, L. Gallo, M.A. Climent, E. Barrio, and A. Querol Enological characterization of natural hybrids from Saccharomyces cerevisiae and S. kudriavzevii Int. J. Food Microbiol. 116 2007 11 18 (Pubitemid 46486755)
47. I. Masneuf, J. Hansen, C. Groth, J. Piskur, and D. Dubourdieu New hybrids between Saccharomyces sensu stricto yeast species found among wine and cider production strains Appl. Environ. Microbiol. 64 1998 3887 3892 (Pubitemid 28462988)
48. B. Dujon Yeast evolutionary genomics Nat. Rev. Genet. 11 2010 512 524
49. J.E. Perez-Ortin, A. Querol, S. Puig, and E. Barrio Molecular characterization of a chromosomal rearrangement involved in the adaptive evolution of yeast strains Genome Res. 12 2002 1533 1539 (Pubitemid 35175091)
50. N. Yuasa, Y. Nakagawa, M. Hayakawa, and Y. Iimura Distribution of the sulfite resistance gene SSU1-R and the variation in its promoter region in wine yeasts J. Biosci. Bioeng. 98 2004 394 397 (Pubitemid 40013209)
51. E. Aa, J.P. Townsend, R.I. Adams, K.M. Nielsen, and J.W. Taylor Population structure and gene evolution in Saccharomyces cerevisiae FEMS Yeast Res. 6 2006 702 715 (Pubitemid 44049990)
52. C.R. Landry, J.P. Townsend, D.L. Hartl, and D. Cavalieri Ecological and evolutionary genomics of Saccharomyces cerevisiae Mol. Ecol. 15 2006 575 591 (Pubitemid 43344777)
53. B. Esteve-Zarzoso, M.T. Fernandez-Espinar, and A. Querol Authentication and identification of Saccharomyces cerevisiae flor yeast races involved in sherry ageing Antonie Van Leeuwenhoek 85 2004 151 158 (Pubitemid 38461047)
54. M.I. Shigami, Y.N. Akagawa, M.H. Ayakawa, Y.I. Imura, FLO11 is the primary factor in flor formation caused by cell surface hydrophobicity in wild-type flor yeast, U.S. Patent 3. Biosci. Biotechnol. Biochemi. 70 (2006) 660-666.
55. S. Zara, A.T. Bakalinsky, G. Zara, G. Pirino, M.A. Demontis, M. Budroni, FLO11-based model for air-liquid interfacial biofilm formation by Saccharomyces cerevisiae, U.S. Patent 6. Appl. Environ. Microbiol. 71 (2005) 2934-2939.
56. M. Fidalgo, R.R. Barrales, J.I. Ibeas, and J. Jimenez Adaptive evolution by mutations in the FLO11 gene Proc. Natl. Acad. Sci. USA 103 2006 11228 11233 (Pubitemid 44156501)
57. M. Novo, F. Bigey, E. Beyne, V. Galeote, F. Gavory, S. Mallet, B. Cambon, J.L. Legras, P. Wincker, S. Casaregola, and S. Dequin Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118 Proc. Natl. Acad. Sci. USA 106 2009 16333 16338
58. V. Galeote, M. Novo, M. Salema-Oom, B C. Brion, E. Valério, P. Gonalves, S. Dequin, FSY1, an horizontally transferred gene in the Saccharomyces cerevisiae EC1118 wine yeast strain encodes a high affinity fructose/H+ symporter, U.S. Patent 33 (2010) Microbiology. (Reading, England).