QDD: A user-friendly program to select microsatellite markers and design primers from large sequencing projects

Bioinformatics

Volumn 26, Issue 3, 2009, Pages 403-404

  Meglécz, Emese ^a   Costedoat, Caroline ^a   Dubut, Vincent ^a   Gilles, André ^a   Malausa, Thibaut ^b   Pech, Nicolas ^a   Martin, Jean François ^c  

^a AIX MARSEILLE UNIVERSITY   (France)

^b CEMAGREF   (France)

^c CENTRE DE BIOLOGIE ET DE GESTION DES POPULATIONS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 77949515434     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp670     Document Type: Note

References (6)

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2. Castoe,T.A. et al. (2009) Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence. Mol. Ecol. Resources, [Epub ahead of print, doi: 10.1111/j.1755-0998.2009.02750.x, Jul 30, 2009].
3. Kalendar,R. et al. (2009) Invited review: FastPCR software for PCR primer and probe design and repeat search. Genes Genomes Genomics, 3 (In press).
4. Kofler,R. et al. (2007) SciRoKo: a new tool for whole genome microsatellite search and investigation. Bioinformatics, 23, 1683-1685.
5. Larkin,M.A. et al. (2007) ClustalW and ClustalX version 2. Bioinformatics, 23, 2947-2948.
6. Rozen,S. and Skaletsky,H. (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol., 132, 365-386.