-
1
-
-
4544271510
-
Redox reactions of the iron-sulfur cluster in a ribosomal RNA methyltransferase, RumA: Optical and EPR studies
-
S. Agarwalla, R.M. Stroud, and B.J. Gaffney Redox reactions of the iron-sulfur cluster in a ribosomal RNA methyltransferase, RumA: Optical and EPR studies Journal of Biological Chemistry 279 2004 34123 34129
-
(2004)
Journal of Biological Chemistry
, vol.279
, pp. 34123-34129
-
-
Agarwalla, S.1
Stroud, R.M.2
Gaffney, B.J.3
-
3
-
-
2442686628
-
A novel partial modification at C2501 in Escherichia coli 23S ribosomal RNA
-
T.E. Andersen, B.T. Porse, and F. Kirpekar A novel partial modification at C2501 in Escherichia coli 23S ribosomal RNA RNA 10 2004 907 913
-
(2004)
RNA
, vol.10
, pp. 907-913
-
-
Andersen, T.E.1
Porse, B.T.2
Kirpekar, F.3
-
4
-
-
85017936539
-
Research methods for detection and quantification of RNA modifications
-
G.N. Basturea Research methods for detection and quantification of RNA modifications Materials and Methods 3 2013 186
-
(2013)
Materials and Methods
, vol.3
, pp. 186
-
-
Basturea, G.N.1
-
5
-
-
84866603533
-
The Escherichia coli RlmN methyltransferase is a dual-specificity enzyme that modifies both rRNA and tRNA and controls translational accuracy
-
A. Benitez-Paez, M. Villarroya, and M.E. Armengod The Escherichia coli RlmN methyltransferase is a dual-specificity enzyme that modifies both rRNA and tRNA and controls translational accuracy RNA 18 2012 1783 1795
-
(2012)
RNA
, vol.18
, pp. 1783-1795
-
-
Benitez-Paez, A.1
Villarroya, M.2
Armengod, M.E.3
-
6
-
-
0042355182
-
Stable isotope labeling for matrix-assisted laser desorption/ionization mass spectrometry and post-source decay analysis of ribonucleic acids
-
B.T. Berhane, and P.A. Limbach Stable isotope labeling for matrix-assisted laser desorption/ionization mass spectrometry and post-source decay analysis of ribonucleic acids Journal of Mass Spectrometry 38 2003 872 878
-
(2003)
Journal of Mass Spectrometry
, vol.38
, pp. 872-878
-
-
Berhane, B.T.1
Limbach, P.A.2
-
7
-
-
79957587786
-
Structural basis for methyl transfer by a radical SAM enzyme
-
A.K. Boal, T.L. Grove, M.I. McLaughlin, N.H. Yennawar, S.J. Booker, and A.C. Rosenzweig Structural basis for methyl transfer by a radical SAM enzyme Science 332 2011 1089 1092
-
(2011)
Science
, vol.332
, pp. 1089-1092
-
-
Boal, A.K.1
Grove, T.L.2
McLaughlin, M.I.3
Yennawar, N.H.4
Booker, S.J.5
Rosenzweig, A.C.6
-
9
-
-
34548739667
-
Probing the intermediacy of covalent RNA enzyme complexes in RNA modification enzymes
-
S.M. Chervin, J.D. Kittendorf, and G.A. Garcia Probing the intermediacy of covalent RNA enzyme complexes in RNA modification enzymes Methods in Enzymology 425 2007 121 137
-
(2007)
Methods in Enzymology
, vol.425
, pp. 121-137
-
-
Chervin, S.M.1
Kittendorf, J.D.2
Garcia, G.A.3
-
10
-
-
0002705479
-
S-adenosylmethionine-dependent methyltransferases: Potential targets in homocysteine-linked pathology
-
R. Carmel, D.W. Jacobsen, Cambridge University Press Cambridge, England
-
S. Clarke, and K. Banfield S-adenosylmethionine-dependent methyltransferases: Potential targets in homocysteine-linked pathology R. Carmel, D.W. Jacobsen, Homocysteine in health and disease 2001 Cambridge University Press Cambridge, England 63 78
-
(2001)
Homocysteine in Health and Disease
, pp. 63-78
-
-
Clarke, S.1
Banfield, K.2
-
11
-
-
34548722786
-
Identifying modifications in RNA by MALDI mass spectrometry
-
S. Douthwaite, and F. Kirpekar Identifying modifications in RNA by MALDI mass spectrometry Methods in Enzymology 425 2007 3 20
-
(2007)
Methods in Enzymology
, vol.425
, pp. 3-20
-
-
Douthwaite, S.1
Kirpekar, F.2
-
12
-
-
84899634018
-
Molecular recognition and modification of the 30S ribosome by the aminoglycoside-resistance methyltransferase NpmA
-
J.A. Dunkle, K. Vinal, P.M. Desai, N. Zelinskaya, M. Savic, D.M. West, and et al. Molecular recognition and modification of the 30S ribosome by the aminoglycoside-resistance methyltransferase NpmA Proceedings of the National Academy of Sciences of the United States of America 111 2014 6275 6280
-
(2014)
Proceedings of the National Academy of Sciences of the United States of America
, vol.111
, pp. 6275-6280
-
-
Dunkle, J.A.1
Vinal, K.2
Desai, P.M.3
Zelinskaya, N.4
Savic, M.5
West, D.M.6
-
13
-
-
58249104513
-
Identification of 8-methyladenosine as the modification catalyzed by the radical SAM methyltransferase Cfr that confers antibiotic resistance in bacteria
-
A.M. Giessing, S.S. Jensen, A. Rasmussen, L.H. Hansen, A. Gondela, K. Long, and et al. Identification of 8-methyladenosine as the modification catalyzed by the radical SAM methyltransferase Cfr that confers antibiotic resistance in bacteria RNA 15 2009 327 336
-
(2009)
RNA
, vol.15
, pp. 327-336
-
-
Giessing, A.M.1
Jensen, S.S.2
Rasmussen, A.3
Hansen, L.H.4
Gondela, A.5
Long, K.6
-
14
-
-
79955526574
-
A radically different mechanism for S-adenosylmethionine-dependent methyltransferases
-
T.L. Grove, J.S. Benner, M.I. Radle, J.H. Ahlum, B.J. Landgraf, C. Krebs, and et al. A radically different mechanism for S-adenosylmethionine-dependent methyltransferases Science 332 2011 604 607
-
(2011)
Science
, vol.332
, pp. 604-607
-
-
Grove, T.L.1
Benner, J.S.2
Radle, M.I.3
Ahlum, J.H.4
Landgraf, B.J.5
Krebs, C.6
-
15
-
-
84879413305
-
A substrate radical intermediate in catalysis by the antibiotic resistance protein Cfr
-
T.L. Grove, J. Livada, E.L. Schwalm, M.T. Green, S.J. Booker, and A. Silakov A substrate radical intermediate in catalysis by the antibiotic resistance protein Cfr Nature Chemical Biology 9 2013 422 427
-
(2013)
Nature Chemical Biology
, vol.9
, pp. 422-427
-
-
Grove, T.L.1
Livada, J.2
Schwalm, E.L.3
Green, M.T.4
Booker, S.J.5
Silakov, A.6
-
16
-
-
0035958741
-
Recognition of nucleotide G745 in 23S ribosomal RNA by the rrmA methyltransferase
-
L.H. Hansen, F. Kirpekar, and S. Douthwaite Recognition of nucleotide G745 in 23S ribosomal RNA by the rrmA methyltransferase Journal of Molecular Biology 310 2001 1001 1010
-
(2001)
Journal of Molecular Biology
, vol.310
, pp. 1001-1010
-
-
Hansen, L.H.1
Kirpekar, F.2
Douthwaite, S.3
-
18
-
-
84877350071
-
Identification of direct targets and modified bases of RNA cytosine methyltransferases
-
V. Khoddami, and B.R. Cairns Identification of direct targets and modified bases of RNA cytosine methyltransferases Nature Biotechnology 31 2013 458 464
-
(2013)
Nature Biotechnology
, vol.31
, pp. 458-464
-
-
Khoddami, V.1
Cairns, B.R.2
-
19
-
-
0037125961
-
RNA methyltransferases utilize two cysteine residues in the formation of 5-methylcytosine
-
M.Y. King, and K.L. Redman RNA methyltransferases utilize two cysteine residues in the formation of 5-methylcytosine Biochemistry 41 2002 11218 11225
-
(2002)
Biochemistry
, vol.41
, pp. 11218-11225
-
-
King, M.Y.1
Redman, K.L.2
-
20
-
-
0033950924
-
Mapping posttranscriptional modifications in 5S ribosomal RNA by MALDI mass spectrometry
-
F. Kirpekar, S. Douthwaite, and P. Roepstorff Mapping posttranscriptional modifications in 5S ribosomal RNA by MALDI mass spectrometry RNA 6 2000 296 306
-
(2000)
RNA
, vol.6
, pp. 296-306
-
-
Kirpekar, F.1
Douthwaite, S.2
Roepstorff, P.3
-
21
-
-
0024226575
-
Reverse transcriptase sequencing of ribosomal RNA for phylogenetic analysis
-
D.J. Lane, K.G. Field, G.J. Olsen, and N.R. Pace Reverse transcriptase sequencing of ribosomal RNA for phylogenetic analysis Methods in Enzymology 167 1988 138 144
-
(1988)
Methods in Enzymology
, vol.167
, pp. 138-144
-
-
Lane, D.J.1
Field, K.G.2
Olsen, G.J.3
Pace, N.R.4
-
22
-
-
0025821199
-
Bacterial resistance to macrolide, lincosamide, and streptogramin antibiotics by target modification
-
R. Leclercq, and P. Courvalin Bacterial resistance to macrolide, lincosamide, and streptogramin antibiotics by target modification Antimicrobial Agents and Chemotherapy 35 1991 1267 1272
-
(1991)
Antimicrobial Agents and Chemotherapy
, vol.35
, pp. 1267-1272
-
-
Leclercq, R.1
Courvalin, P.2
-
24
-
-
33745599646
-
The Cfr rRNA methyltransferase confers resistance to phenicols, lincosamides, oxazolidinones, pleuromutilins, and streptogramin A antibiotics
-
K.S. Long, J. Poehlsgaard, C. Kehrenberg, S. Schwarz, and B. Vester The Cfr rRNA methyltransferase confers resistance to phenicols, lincosamides, oxazolidinones, pleuromutilins, and streptogramin A antibiotics Antimicrobial Agents and Chemotherapy 50 2006 2500 2505
-
(2006)
Antimicrobial Agents and Chemotherapy
, vol.50
, pp. 2500-2505
-
-
Long, K.S.1
Poehlsgaard, J.2
Kehrenberg, C.3
Schwarz, S.4
Vester, B.5
-
25
-
-
0035162971
-
The rlmB gene is essential for formation of Gm2251 in 23S rRNA but not for ribosome maturation in Escherichia coli
-
J.M. Lövgren, and P.M. Wikström The rlmB gene is essential for formation of Gm2251 in 23S rRNA but not for ribosome maturation in Escherichia coli Journal of Bacteriology 183 2001 6957 6960
-
(2001)
Journal of Bacteriology
, vol.183
, pp. 6957-6960
-
-
Lövgren, J.M.1
Wikström, P.M.2
-
26
-
-
84875692043
-
MODOMICS: A database of RNA modification pathways - 2013 update
-
M.A. Machnicka, K. Milanowska, O. Osman Oglou, E. Purta, M. Kurkowska, A. Olchowik, and et al. MODOMICS: A database of RNA modification pathways - 2013 update Nucleic Acids Research 41 2013 D262 D267
-
(2013)
Nucleic Acids Research
, vol.41
, pp. D262-D267
-
-
Machnicka, M.A.1
Milanowska, K.2
Osman Oglou, O.3
Purta, E.4
Kurkowska, M.5
Olchowik, A.6
-
27
-
-
84856134776
-
The chemistry of peptidyltransferase center-targeted antibiotics: Enzymatic resistance and approaches to countering resistance
-
K.P. McCusker, and D.G. Fujimori The chemistry of peptidyltransferase center-targeted antibiotics: Enzymatic resistance and approaches to countering resistance ACS Chemical Biology 7 2012 64 72
-
(2012)
ACS Chemical Biology
, vol.7
, pp. 64-72
-
-
McCusker, K.P.1
Fujimori, D.G.2
-
28
-
-
84868122500
-
Covalent intermediate in the catalytic mechanism of the radical S-adenosyl-l-methionine methyl synthase RlmN trapped by mutagenesis
-
K.P. McCusker, K.F. Medzihradszky, A.L. Shiver, R.J. Nichols, F. Yan, D.A. Maltby, and et al. Covalent intermediate in the catalytic mechanism of the radical S-adenosyl-l-methionine methyl synthase RlmN trapped by mutagenesis Journal of the American Chemical Society 134 2012 18074 18081
-
(2012)
Journal of the American Chemical Society
, vol.134
, pp. 18074-18081
-
-
McCusker, K.P.1
Medzihradszky, K.F.2
Shiver, A.L.3
Nichols, R.J.4
Yan, F.5
Maltby, D.A.6
-
29
-
-
84862649489
-
Comprehensive analysis of mRNA methylation reveals enrichment in 3′ UTRs and near stop codons
-
K.D. Meyer, Y. Saletore, P. Zumbo, O. Elemento, C.E. Mason, and S.R. Jaffrey Comprehensive analysis of mRNA methylation reveals enrichment in 3′ UTRs and near stop codons Cell 149 2012 1635 1646
-
(2012)
Cell
, vol.149
, pp. 1635-1646
-
-
Meyer, K.D.1
Saletore, Y.2
Zumbo, P.3
Elemento, O.4
Mason, C.E.5
Jaffrey, S.R.6
-
31
-
-
34548726200
-
Identification of modified residues in RNAs by reverse transcription-based methods
-
Y. Motorin, S. Muller, I. Behm-Ansmant, and C. Branlant Identification of modified residues in RNAs by reverse transcription-based methods Methods in Enzymology 425 2007 21 53
-
(2007)
Methods in Enzymology
, vol.425
, pp. 21-53
-
-
Motorin, Y.1
Muller, S.2
Behm-Ansmant, I.3
Branlant, C.4
-
33
-
-
79251557798
-
Nascent peptide in the ribosome exit tunnel affects functional properties of the A-site of the peptidyl transferase center
-
H. Ramu, N. Vázquez-Laslop, D. Klepacki, Q. Dai, J. Piccirilli, R. Micura, and et al. Nascent peptide in the ribosome exit tunnel affects functional properties of the A-site of the peptidyl transferase center Molecular Cell 41 2011 321 330
-
(2011)
Molecular Cell
, vol.41
, pp. 321-330
-
-
Ramu, H.1
Vázquez-Laslop, N.2
Klepacki, D.3
Dai, Q.4
Piccirilli, J.5
Micura, R.6
-
34
-
-
85017936321
-
What do we know about ribosomal RNA methylation in Escherichia coli?
-
O.V. Sergeeva, A.A. Bogdanov, and P.V. Sergiev What do we know about ribosomal RNA methylation in Escherichia coli? Biochimie 2014 1 9
-
(2014)
Biochimie
, pp. 1-9
-
-
Sergeeva, O.V.1
Bogdanov, A.A.2
Sergiev, P.V.3
-
35
-
-
84861416305
-
Modification of ribosomal RNA: From enzymes to function
-
M.V. Rodnina, W. Wintermeyer, R. Green, Springer Verlag GmbH Vienna
-
P.V. Sergiev, A.Y. Golovina, I.V. Prokhorova, O.V. Sergeeva, I.A. Osterman, M.V. Nesterchuk, and et al. Modification of ribosomal RNA: From enzymes to function M.V. Rodnina, W. Wintermeyer, R. Green, Ribosomes: Structure, function, and dynamics 2011 Springer Verlag GmbH Vienna 97 110
-
(2011)
Ribosomes: Structure, Function, and Dynamics
, pp. 97-110
-
-
Sergiev, P.V.1
Golovina, A.Y.2
Prokhorova, I.V.3
Sergeeva, O.V.4
Osterman, I.A.5
Nesterchuk, M.V.6
-
36
-
-
84902246283
-
Characterization of a cross-linked protein-nucleic acid substrate radical in the reaction catalyzed by RlmN
-
A. Silakov, T.L. Grove, M.I. Radle, M.R. Bauerle, M.T. Green, A.C. Rosenzweig, and et al. Characterization of a cross-linked protein-nucleic acid substrate radical in the reaction catalyzed by RlmN Journal of the American Chemical Society 136 2014 8221 8228
-
(2014)
Journal of the American Chemical Society
, vol.136
, pp. 8221-8228
-
-
Silakov, A.1
Grove, T.L.2
Radle, M.I.3
Bauerle, M.R.4
Green, M.T.5
Rosenzweig, A.C.6
-
37
-
-
42949115806
-
Transcriptional and translational control of the mlr operon, which confers resistance to seven classes of protein synthesis inhibitors
-
L.K. Smith, and A.S. Mankin Transcriptional and translational control of the mlr operon, which confers resistance to seven classes of protein synthesis inhibitors Antimicrobial Agents and Chemotherapy 52 2008 1703 1712
-
(2008)
Antimicrobial Agents and Chemotherapy
, vol.52
, pp. 1703-1712
-
-
Smith, L.K.1
Mankin, A.S.2
-
38
-
-
0035282866
-
Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: Functional characterization using new analysis and information visualization methods
-
H.J. Sofia, G. Chen, B.G. Hetzler, J.F. Reyes-Spindola, and N.E. Miller Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: Functional characterization using new analysis and information visualization methods Nucleic Acids Research 29 2001 1097 1106
-
(2001)
Nucleic Acids Research
, vol.29
, pp. 1097-1106
-
-
Sofia, H.J.1
Chen, G.2
Hetzler, B.G.3
Reyes-Spindola, J.F.4
Miller, N.E.5
-
39
-
-
77958091707
-
Detection of cytosine methylation in RNA using bisulfite sequencing
-
P. Tim, H. Katharina, and S. Matthias Detection of cytosine methylation in RNA using bisulfite sequencing Cold Spring Harbor Protocols 10 2010 1 7
-
(2010)
Cold Spring Harbor Protocols
, vol.10
, pp. 1-7
-
-
Tim, P.1
Katharina, H.2
Matthias, S.3
-
40
-
-
0033534617
-
Purification, cloning, and characterization of the 16S RNA m2G1207 methyltransferase from Escherichia coli
-
J.S. Tscherne, K. Nurse, P. Popienick, and J. Ofengand Purification, cloning, and characterization of the 16S RNA m2G1207 methyltransferase from Escherichia coli Journal of Biological Chemistry 274 1999 924 929
-
(1999)
Journal of Biological Chemistry
, vol.274
, pp. 924-929
-
-
Tscherne, J.S.1
Nurse, K.2
Popienick, P.3
Ofengand, J.4
-
41
-
-
0027431083
-
Antiviral activity of C-alkylated purine nucleosides obtained by cross-coupling with tetraalkyltin reagents
-
A.A. Van Aerschot, P. Mamos, N.J. Weyns, S. Ikeda, E. De Clercq, and P.A. Herdewijn Antiviral activity of C-alkylated purine nucleosides obtained by cross-coupling with tetraalkyltin reagents Journal of Medicinal Chemistry 36 2002 2938 2942
-
(2002)
Journal of Medicinal Chemistry
, vol.36
, pp. 2938-2942
-
-
Van Aerschot, A.A.1
Mamos, P.2
Weyns, N.J.3
Ikeda, S.4
De Clercq, E.5
Herdewijn, P.A.6
-
42
-
-
0037447903
-
2,8-Disubstituted adenosine derivatives as partial agonists for the adenosine A2A receptor
-
E.W. van Tilburg, M. Gremmen, J. von Frijtag Drabbe Kunzel, M. de Groote, and A.P. IJzerman 2,8-Disubstituted adenosine derivatives as partial agonists for the adenosine A2A receptor Bioorganic and Medicinal Chemistry 11 2003 2183 2192
-
(2003)
Bioorganic and Medicinal Chemistry
, vol.11
, pp. 2183-2192
-
-
Van Tilburg, E.W.1
Gremmen, M.2
Von Frijtag Drabbe Kunzel, J.3
De Groote, M.4
Ijzerman, A.P.5
-
43
-
-
77956884449
-
The key function of a conserved and modified rRNA residue in the ribosomal response to the nascent peptide
-
N. Vazquez-Laslop, H. Ramu, D. Klepacki, K. Kannan, and A.S. Mankin The key function of a conserved and modified rRNA residue in the ribosomal response to the nascent peptide EMBO Journal 29 2010 3108 3117
-
(2010)
EMBO Journal
, vol.29
, pp. 3108-3117
-
-
Vazquez-Laslop, N.1
Ramu, H.2
Klepacki, D.3
Kannan, K.4
Mankin, A.S.5
-
44
-
-
78649896739
-
Antibiotic resistance in bacteria caused by modified nucleosides in 23S ribosomal RNA
-
H. Grosjean, Landes Bioscience Austin, TX
-
B. Vester, and K.S. Long Antibiotic resistance in bacteria caused by modified nucleosides in 23S ribosomal RNA H. Grosjean, DNA and RNA modification enzymes: Structure, mechanism, function and evolution 2009 Landes Bioscience Austin, TX 537 549
-
(2009)
DNA and RNA Modification Enzymes: Structure, Mechanism, Function and Evolution
, pp. 537-549
-
-
Vester, B.1
Long, K.S.2
-
45
-
-
84890445788
-
Ribosome-targeting antibiotics and mechanisms of bacterial resistance
-
D.N. Wilson Ribosome-targeting antibiotics and mechanisms of bacterial resistance Nature Reviews Microbiology 12 2014 35 48
-
(2014)
Nature Reviews Microbiology
, vol.12
, pp. 35-48
-
-
Wilson, D.N.1
-
47
-
-
77949777140
-
RlmN and Cfr are radical SAM enzymes involved in methylation of ribosomal RNA
-
F. Yan, J.M. LaMarre, R. Rohrich, J. Wiesner, H. Jomaa, A.S. Mankin, and et al. RlmN and Cfr are radical SAM enzymes involved in methylation of ribosomal RNA Journal of the American Chemical Society 132 2010 3953 3964
-
(2010)
Journal of the American Chemical Society
, vol.132
, pp. 3953-3964
-
-
Yan, F.1
LaMarre, J.M.2
Rohrich, R.3
Wiesner, J.4
Jomaa, H.5
Mankin, A.S.6
|