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Volumn 425, Issue , 2007, Pages 121-137

Probing the Intermediacy of Covalent RNA Enzyme Complexes in RNA Modification Enzymes

Author keywords

[No Author keywords available]

Indexed keywords

ENZYME; GLYCOSYLTRANSFERASE; QUEUINE; QUEUINE TRANSFER RIBONUCLEIC ACID RIBOSYLTRANSFERASE; TRANSFER RNA; UNCLASSIFIED DRUG; QUEUINE TRNA RIBOSYLTRANSFERASE; QUEUINE TRNA-RIBOSYLTRANSFERASE; RNA;

EID: 34548739667     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(07)25005-0     Document Type: Review
Times cited : (5)

References (28)
  • 1
    • 33751298733 scopus 로고    scopus 로고
    • The identification of chemical intermediates in enzyme catalysis by the rapid quench-flow technique
    • Barman T.E., Bellamy S.R.W., Gutfreund H., Halford S.E., and Lionne C. The identification of chemical intermediates in enzyme catalysis by the rapid quench-flow technique. Cell. Mol. Life Sci. 63 (2006) 2571-2583
    • (2006) Cell. Mol. Life Sci. , vol.63 , pp. 2571-2583
    • Barman, T.E.1    Bellamy, S.R.W.2    Gutfreund, H.3    Halford, S.E.4    Lionne, C.5
  • 3
    • 0034212553 scopus 로고    scopus 로고
    • Automated ultra-thin-layer SDS gel electrophoresis of proteins using noncovalent fluorescent labeling
    • Csapo Z., Gerstner A., Sasvari-Szekely M., and Guttman A. Automated ultra-thin-layer SDS gel electrophoresis of proteins using noncovalent fluorescent labeling. Anal. Chem. 72 (2000) 2519-2525
    • (2000) Anal. Chem. , vol.72 , pp. 2519-2525
    • Csapo, Z.1    Gerstner, A.2    Sasvari-Szekely, M.3    Guttman, A.4
  • 4
    • 0028641310 scopus 로고
    • tRNA-guanine transglycosylase from Escherichia coli: Recognition of dimeric, unmodified tRNATyr
    • Curnow A.W., and Garcia G.A. tRNA-guanine transglycosylase from Escherichia coli: Recognition of dimeric, unmodified tRNATyr. Biochimie 76 (1994) 1183-1191
    • (1994) Biochimie , vol.76 , pp. 1183-1191
    • Curnow, A.W.1    Garcia, G.A.2
  • 5
    • 0037238573 scopus 로고    scopus 로고
    • Putrescine or a combination of methionine and arginine restores virulence gene expression in a tRNA modification-deficient mutant of Shigella flexneri: A possible role in adaptation of virulence
    • Durand J.M., and Bjork G.R. Putrescine or a combination of methionine and arginine restores virulence gene expression in a tRNA modification-deficient mutant of Shigella flexneri: A possible role in adaptation of virulence. Mol. Microbiol. 47 (2003) 519-527
    • (2003) Mol. Microbiol. , vol.47 , pp. 519-527
    • Durand, J.M.1    Bjork, G.R.2
  • 7
    • 0038160045 scopus 로고    scopus 로고
    • tRNA-guanine transglycosylase from E. coli: A ping-pong kinetic mechanism is consistent with nucleophilic catalysis
    • Goodenough-Lashua D.M., and Garcia G.A. tRNA-guanine transglycosylase from E. coli: A ping-pong kinetic mechanism is consistent with nucleophilic catalysis. Bioorg. Chem. 31 (2003) 331-344
    • (2003) Bioorg. Chem. , vol.31 , pp. 331-344
    • Goodenough-Lashua, D.M.1    Garcia, G.A.2
  • 8
    • 33749357492 scopus 로고    scopus 로고
    • Mechanistic investigations of the pseudouridine synthase RluA using RNA containing 5-fluorouridine
    • Hamilton C.S., Greco T.M., Vizthum C.A., Ginter J.M., Johnston M.V., and Mueller E.G. Mechanistic investigations of the pseudouridine synthase RluA using RNA containing 5-fluorouridine. Biochemistry 45 (2006) 12029-12038
    • (2006) Biochemistry , vol.45 , pp. 12029-12038
    • Hamilton, C.S.1    Greco, T.M.2    Vizthum, C.A.3    Ginter, J.M.4    Johnston, M.V.5    Mueller, E.G.6
  • 9
    • 16844378432 scopus 로고    scopus 로고
    • mRNA guanylation catalyzed by the S-adenosylmethionine-dependent guanylyltransferase of Bamboo Mosaic Virus
    • Huang Y.-L., Hsu Y.-H., Han Y.-., and Meng M. mRNA guanylation catalyzed by the S-adenosylmethionine-dependent guanylyltransferase of Bamboo Mosaic Virus. J. Biol. Chem. 280 (2005) 13153-13162
    • (2005) J. Biol. Chem. , vol.280 , pp. 13153-13162
    • Huang, Y.-L.1    Hsu, Y.-H.2    Han, Y.-.3    Meng, M.4
  • 10
    • 27744521320 scopus 로고    scopus 로고
    • Human Tdp1 cleaves a broad spectrum of substrates, including phosphoamide linkages
    • Interthal H., Chen H.J., and Champoux J.J. Human Tdp1 cleaves a broad spectrum of substrates, including phosphoamide linkages. J. Biol. Chem. 280 (2005) 36518-36528
    • (2005) J. Biol. Chem. , vol.280 , pp. 36518-36528
    • Interthal, H.1    Chen, H.J.2    Champoux, J.J.3
  • 11
    • 0141925696 scopus 로고    scopus 로고
    • Disorders of mitochondrial protein synthesis
    • Jacobs H.T. Disorders of mitochondrial protein synthesis. Hum. Mol. Genet. 15 (2003) 293-301
    • (2003) Hum. Mol. Genet. , vol.15 , pp. 293-301
    • Jacobs, H.T.1
  • 12
    • 0028985312 scopus 로고
    • 4)-methyltransferase catalysis: 19F NMR spectroscopy of an enzyme-FUraRNA covalent complex
    • 4)-methyltransferase catalysis: 19F NMR spectroscopy of an enzyme-FUraRNA covalent complex. Biochemistry 34 (1995) 2441-2446
    • (1995) Biochemistry , vol.34 , pp. 2441-2446
    • Kealey, J.T.1    Santi, D.V.2
  • 13
    • 0037125961 scopus 로고    scopus 로고
    • RNA methyltransferases utilize two cysteine residues in the formation of 5-methylcytosine
    • King M.Y., and Redman K.L. RNA methyltransferases utilize two cysteine residues in the formation of 5-methylcytosine. Biochemistry 41 (2002) 11218-11225
    • (2002) Biochemistry , vol.41 , pp. 11218-11225
    • King, M.Y.1    Redman, K.L.2
  • 14
    • 0035960560 scopus 로고    scopus 로고
    • tRNA-guanine transglycosylase from Escherichia coli: Molecular mechanism and role of aspartate 89
    • Kittendorf J.D., Barcomb L.M., Nonekowski S.T., and Garcia G.A. tRNA-guanine transglycosylase from Escherichia coli: Molecular mechanism and role of aspartate 89. Biochemistry 40 (2001) 14123-14133
    • (2001) Biochemistry , vol.40 , pp. 14123-14133
    • Kittendorf, J.D.1    Barcomb, L.M.2    Nonekowski, S.T.3    Garcia, G.A.4
  • 15
    • 0142149105 scopus 로고    scopus 로고
    • An essential role for aspartate 264 in catalysis by tRNA-guanine transglycosylase from Escherichia coli
    • Kittendorf J.D., Sgraja T., Reuter K., Klebe G., and Garcia G.A. An essential role for aspartate 264 in catalysis by tRNA-guanine transglycosylase from Escherichia coli. J. Biol. Chem. 278 (2003) 42369-42376
    • (2003) J. Biol. Chem. , vol.278 , pp. 42369-42376
    • Kittendorf, J.D.1    Sgraja, T.2    Reuter, K.3    Klebe, G.4    Garcia, G.A.5
  • 16
    • 0033950923 scopus 로고    scopus 로고
    • tRNA-guanine transglycosylase from Escherichia coli: Recognition of noncognate-cognate chimeric tRNA and discovery of a novel recognition site within the TpsiC arm of tRNA(Phe)
    • Kung F.L., Nonekowski S., and Garcia G.A. tRNA-guanine transglycosylase from Escherichia coli: Recognition of noncognate-cognate chimeric tRNA and discovery of a novel recognition site within the TpsiC arm of tRNA(Phe). RNA 6 (2000) 233-244
    • (2000) RNA , vol.6 , pp. 233-244
    • Kung, F.L.1    Nonekowski, S.2    Garcia, G.A.3
  • 17
    • 15044346521 scopus 로고    scopus 로고
    • Deficient RNA editing of GluR2 and neuronal death in amyotropic lateral sclerosis
    • Kwak S., and Kawahara Y. Deficient RNA editing of GluR2 and neuronal death in amyotropic lateral sclerosis. J. Mol. Med. 83 (2005) 110-120
    • (2005) J. Mol. Med. , vol.83 , pp. 110-120
    • Kwak, S.1    Kawahara, Y.2
  • 18
    • 33646228629 scopus 로고    scopus 로고
    • Synthesis, biological evaluation, and crystallographic studies of extended guanine-based (lin-benzoguanine) inhibitors for tRNA-guanine transglycosylase (TGT)
    • Meyer E.A., Donati N., Guillot M., Schweizer W.B., and Diederich F. Synthesis, biological evaluation, and crystallographic studies of extended guanine-based (lin-benzoguanine) inhibitors for tRNA-guanine transglycosylase (TGT). Helvetica Chim. Acta 89 (2006) 573-597
    • (2006) Helvetica Chim. Acta , vol.89 , pp. 573-597
    • Meyer, E.A.1    Donati, N.2    Guillot, M.3    Schweizer, W.B.4    Diederich, F.5
  • 19
    • 0019975245 scopus 로고
    • Isolation and characterization of an Escherichia coli mutant lacking tRNA-guanine transglycosylase. Function and biosynthesis of queuosine in tRNA
    • Noguchi S., Nishimura Y., Hirota Y., and Nishimura S. Isolation and characterization of an Escherichia coli mutant lacking tRNA-guanine transglycosylase. Function and biosynthesis of queuosine in tRNA. J. Biol. Chem. 257 (1982) 6544-6550
    • (1982) J. Biol. Chem. , vol.257 , pp. 6544-6550
    • Noguchi, S.1    Nishimura, Y.2    Hirota, Y.3    Nishimura, S.4
  • 20
    • 0034757682 scopus 로고    scopus 로고
    • tRNA recognition by tRNA-guanine transglycosylase from Escherichia coli: The role of U33 in U-G-U sequence recognition
    • Nonekowski S.T., and Garcia G.A. tRNA recognition by tRNA-guanine transglycosylase from Escherichia coli: The role of U33 in U-G-U sequence recognition. RNA 7 (2001) 1432-1441
    • (2001) RNA , vol.7 , pp. 1432-1441
    • Nonekowski, S.T.1    Garcia, G.A.2
  • 21
    • 0036510739 scopus 로고    scopus 로고
    • The Escherichia coli tRNA-Guanine transglycosylase can recognize and modify DNA
    • Nonekowski S.T., Kung F.-., and Garcia G.A. The Escherichia coli tRNA-Guanine transglycosylase can recognize and modify DNA. J. Biol. Chem. 277 (2002) 7178-7182
    • (2002) J. Biol. Chem. , vol.277 , pp. 7178-7182
    • Nonekowski, S.T.1    Kung, F.-.2    Garcia, G.A.3
  • 22
    • 0018800827 scopus 로고
    • Isolation and characterization of a guanine insertion enzyme, a specific tRNA transglycosylase, from Escherichia coli
    • Okada N., and Nishimura S. Isolation and characterization of a guanine insertion enzyme, a specific tRNA transglycosylase, from Escherichia coli. J. Biol. Chem. 254 (1979) 3061-3066
    • (1979) J. Biol. Chem. , vol.254 , pp. 3061-3066
    • Okada, N.1    Nishimura, S.2
  • 23
    • 0018800830 scopus 로고
    • Novel mechanism of post-transcriptional modification of tRNA. Insertion of bases of Q precursors into tRNA by a specific tRNA transglycosylase reaction
    • Okada N., Noguchi S., Kasai H., Shindo-Okada N., Ohgi T., Goto T., and Nishimura S. Novel mechanism of post-transcriptional modification of tRNA. Insertion of bases of Q precursors into tRNA by a specific tRNA transglycosylase reaction. J. Biol. Chem. 254 (1979) 3067-3073
    • (1979) J. Biol. Chem. , vol.254 , pp. 3067-3073
    • Okada, N.1    Noguchi, S.2    Kasai, H.3    Shindo-Okada, N.4    Ohgi, T.5    Goto, T.6    Nishimura, S.7
  • 24
    • 33846279810 scopus 로고    scopus 로고
    • Assembly of protein-RNA complexes using natural RNA and mutant forms of an RNA cytosine methyltransferase
    • Redman K.L. Assembly of protein-RNA complexes using natural RNA and mutant forms of an RNA cytosine methyltransferase. Biomacromolecules 7 (2006) 3321-3326
    • (2006) Biomacromolecules , vol.7 , pp. 3321-3326
    • Redman, K.L.1
  • 25
    • 0029991713 scopus 로고    scopus 로고
    • Crystal structure of tRNA-guanine transglycosylase: RNA modification by base exchange
    • Romier C., Reuter K., Suck D., and Ficner R. Crystal structure of tRNA-guanine transglycosylase: RNA modification by base exchange. EMBO J. 15 (1996) 2850-2857
    • (1996) EMBO J. , vol.15 , pp. 2850-2857
    • Romier, C.1    Reuter, K.2    Suck, D.3    Ficner, R.4
  • 26
    • 0029754654 scopus 로고    scopus 로고
    • Mutagenesis and crystallographic studies of Zymomonas mobilis tRNA-guanine transglycosylase reveal aspartate 102 as the active site nucleophile
    • Romier C., Reuter K., Suck D., and Ficner R. Mutagenesis and crystallographic studies of Zymomonas mobilis tRNA-guanine transglycosylase reveal aspartate 102 as the active site nucleophile. Biochemistry 35 (1996) 15734-15739
    • (1996) Biochemistry , vol.35 , pp. 15734-15739
    • Romier, C.1    Reuter, K.2    Suck, D.3    Ficner, R.4
  • 27
    • 0018806185 scopus 로고
    • A rapid and sensitive method for detection of proteins in polyacrylamide SDS gels: Staining with ethidium bromide
    • Vincent A., and Scherre K. A rapid and sensitive method for detection of proteins in polyacrylamide SDS gels: Staining with ethidium bromide. Mol. Biol. Rep. 5 (1979) 209-214
    • (1979) Mol. Biol. Rep. , vol.5 , pp. 209-214
    • Vincent, A.1    Scherre, K.2
  • 28
    • 0141596159 scopus 로고    scopus 로고
    • Chemical trapping and crystal structure of a catalytic tRNA guanine transgylcosylase covalent intermediate
    • Xie W., Liu X., and Huang R.H. Chemical trapping and crystal structure of a catalytic tRNA guanine transgylcosylase covalent intermediate. Nat. Struct. Biol. 10 (2003) 781-788
    • (2003) Nat. Struct. Biol. , vol.10 , pp. 781-788
    • Xie, W.1    Liu, X.2    Huang, R.H.3


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