-
2
-
-
1242309517
-
Decoding the genome: A modified view
-
Agris PF. 2004. Decoding the genome: A modified view. Nucleic Acids Res 32: 223-238.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 223-238
-
-
Agris, P.F.1
-
3
-
-
46449083572
-
Bringing order to translation: The contributions of transfer RNA anticodon-domain modifications
-
Agris PF. 2008. Bringing order to translation: The contributions of transfer RNA anticodon-domain modifications. EMBO Rep 9: 629-635.
-
(2008)
EMBO Rep
, vol.9
, pp. 629-635
-
-
Agris, P.F.1
-
4
-
-
33846269602
-
TRNA's wobble decoding of the genome: 40 years of modification
-
Agris PF, Vendeix FA, Graham WD. 2007. tRNA's wobble decoding of the genome: 40 years of modification. J Mol Biol 366: 1-13.
-
(2007)
J Mol Biol
, vol.366
, pp. 1-13
-
-
Agris, P.F.1
Vendeix, F.A.2
Graham, W.D.3
-
5
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
6
-
-
2442686628
-
A novel partial modification at C2501 in Escherichia coli 23S ribosomal RNA
-
Andersen TE, Porse BT, Kirpekar F. 2004. A novel partial modification at C2501 in Escherichia coli 23S ribosomal RNA. RNA 10: 907-913.
-
(2004)
RNA
, vol.10
, pp. 907-913
-
-
Andersen, T.E.1
Porse, B.T.2
Kirpekar, F.3
-
7
-
-
78649637486
-
S-adenosylmethionine-dependent radical-based modification of biological macromolecules
-
Atta M, Mulliez E, Arragain S, Forouhar F, Hunt JF, Fontecave M. 2010. S-adenosylmethionine-dependent radical-based modification of biological macromolecules. Curr Opin Struct Biol 20: 684-692.
-
(2010)
Curr Opin Struct Biol
, vol.20
, pp. 684-692
-
-
Atta, M.1
Mulliez, E.2
Arragain, S.3
Forouhar, F.4
Hunt, J.F.5
Fontecave, M.6
-
8
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: The Keio collection
-
doi: 10.1038/msb4100050
-
Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H. 2006. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: The Keio collection. Mol Syst Biol 2: 2006.0008. doi: 10.1038/msb4100050.
-
(2006)
Mol Syst Biol
, vol.2
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
9
-
-
0002739483
-
Derivations and genotypes of some mutant derivatives of Escherichia coli K-12
-
(ed. F Neidhardt, R Curtis), American Society for Microbiology, Washington, DC
-
Bachmann D. 1996. Derivations and genotypes of some mutant derivatives of Escherichia coli K-12. In Escherichia coli and Salmonella: Cellular and molecular biology (ed. F Neidhardt, R Curtis), pp. 2460-2488. American Society for Microbiology, Washington, DC.
-
(1996)
Escherichia Coli and Salmonella: Cellular and Molecular Biology
, pp. 2460-2488
-
-
Bachmann, D.1
-
10
-
-
0035903569
-
Bacterial senescence: Protein oxidation in non-proliferating cells is dictated by the accuracy of the ribosomes
-
Ballesteros M, Fredriksson A, Henriksson J, Nystrom T. 2001. Bacterial senescence: Protein oxidation in non-proliferating cells is dictated by the accuracy of the ribosomes. EMBO J 20: 5280-5289.
-
(2001)
EMBO J
, vol.20
, pp. 5280-5289
-
-
Ballesteros, M.1
Fredriksson, A.2
Henriksson, J.3
Nystrom, T.4
-
13
-
-
0035863196
-
A primordial tRNA modification required for the evolution of life?
-
Bjork GR, Jacobsson K, Nilsson K, Johansson MJ, Bystrom AS, Persson OP. 2001. A primordial tRNA modification required for the evolution of life? EMBO J 20: 231-239.
-
(2001)
EMBO J
, vol.20
, pp. 231-239
-
-
Bjork, G.R.1
Jacobsson, K.2
Nilsson, K.3
Johansson, M.J.4
Bystrom, A.S.5
Persson, O.P.6
-
14
-
-
0000991867
-
Removal of dissolved oxygen from water: A comparison of four common techniques
-
Butler IB, Schoonen MA, Rickard DT. 1994. Removal of dissolved oxygen from water: A comparison of four common techniques. Talanta 41: 211-215.
-
(1994)
Talanta
, vol.41
, pp. 211-215
-
-
Butler, I.B.1
Schoonen, M.A.2
Rickard, D.T.3
-
15
-
-
67049154309
-
6-isopentenyladenosine at tRNA anticodon
-
6-isopentenyladenosine at tRNA anticodon. Biochemistry 48: 5057-5065.
-
(2009)
Biochemistry
, vol.48
, pp. 5057-5065
-
-
Chimnaronk, S.1
Forouhar, F.2
Sakai, J.3
Yao, M.4
Tron, C.M.5
Atta, M.6
Fontecave, M.7
Hunt, J.F.8
Tanaka, I.9
-
16
-
-
46449122264
-
TRNA modification by GidA/MnmE is necessary for Streptococcus pyogenes virulence: A new strategy to make live attenuated strains
-
Cho KH, Caparon MG. 2008. tRNA modification by GidA/MnmE is necessary for Streptococcus pyogenes virulence: A new strategy to make live attenuated strains. Infect Immun 76: 3176-3186.
-
(2008)
Infect Immun
, vol.76
, pp. 3176-3186
-
-
Cho, K.H.1
Caparon, M.G.2
-
17
-
-
35648960799
-
Expanding the nucleotide repertoire of the ribosome with post-transcriptional modifications
-
Chow CS, Lamichhane TN, Mahto SK. 2007. Expanding the nucleotide repertoire of the ribosome with post-transcriptional modifications. ACS Chem Biol 2: 610-619.
-
(2007)
ACS Chem Biol
, vol.2
, pp. 610-619
-
-
Chow, C.S.1
Lamichhane, T.N.2
Mahto, S.K.3
-
18
-
-
58149191269
-
MODOMICS: A database of RNA modification pathways. 2008 update
-
Czerwoniec A, Dunin-Horkawicz S, Purta E, Kaminska KH, Kasprzak JM, Bujnicki JM, Grosjean H, Rother K. 2009. MODOMICS: A database of RNA modification pathways. 2008 update. Nucleic Acids Res 37: D118-D121.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Czerwoniec, A.1
Dunin-Horkawicz, S.2
Purta, E.3
Kaminska, K.H.4
Kasprzak, J.M.5
Bujnicki, J.M.6
Grosjean, H.7
Rother, K.8
-
19
-
-
0028324446
-
Ribosome binding of DNA analogs of tRNA requires base modifications and supports the "extended anticodon"
-
Dao V, Guenther R, Malkiewicz A, Nawrot B, Sochacka E, Kraszewski A, Jankowska J, Everett K, Agris PF. 1994. Ribosome binding of DNA analogs of tRNA requires base modifications and supports the "extended anticodon". Proc Natl Acad Sci 91: 2125-2129.
-
(1994)
Proc Natl Acad Sci
, vol.91
, pp. 2125-2129
-
-
Dao, V.1
Guenther, R.2
Malkiewicz, A.3
Nawrot, B.4
Sochacka, E.5
Kraszewski, A.6
Jankowska, J.7
Everett, K.8
Agris, P.F.9
-
20
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko KA, Wanner BL. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci 97: 6640-6645.
-
(2000)
Proc Natl Acad Sci
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
21
-
-
0036629250
-
RRNA modifications and ribosome function
-
Decatur WA, Fournier MJ. 2002. rRNA modifications and ribosome function. Trends Biochem Sci 27: 344-351.
-
(2002)
Trends Biochem Sci
, vol.27
, pp. 344-351
-
-
Decatur, W.A.1
Fournier, M.J.2
-
22
-
-
14644430471
-
ProbCons: Probabilistic consistency-based multiple sequence alignment
-
Do CB, Mahabhashyam MS, Brudno M, Batzoglou S. 2005. ProbCons: Probabilistic consistency-based multiple sequence alignment. Genome Res 15: 330-340.
-
(2005)
Genome Res
, vol.15
, pp. 330-340
-
-
Do, C.B.1
Mahabhashyam, M.S.2
Brudno, M.3
Batzoglou, S.4
-
23
-
-
0031743421
-
Profile hidden Markov models
-
Eddy SR. 1998. Profile hidden Markov models. Bioinformatics 14: 755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
24
-
-
66249095330
-
The universal YrdC/Sua5 family is required for the formation of threonylcarbamoyladenosine in tRNA
-
El Yacoubi B, Lyons B, Cruz Y, Reddy R, Nordin B, Agnelli F, Williamson JR, Schimmel P, Swairjo MA, de Crecy-Lagard V. 2009. The universal YrdC/Sua5 family is required for the formation of threonylcarbamoyladenosine in tRNA. Nucleic Acids Res 37: 2894-2909.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 2894-2909
-
-
El Yacoubi, B.1
Lyons, B.2
Cruz, Y.3
Reddy, R.4
Nordin, B.5
Agnelli, F.6
Williamson, J.R.7
Schimmel, P.8
Swairjo, M.A.9
De Crecy-Lagard, V.10
-
25
-
-
0021770444
-
Novel E. coli mutants deficient in biosynthesis of 5-methylaminomethyl-2- thiouridine
-
Elseviers D, Petrullo LA, Gallagher PJ. 1984. Novel E. coli mutants deficient in biosynthesis of 5-methylaminomethyl-2-thiouridine. Nucleic Acids Res 12: 3521-3534.
-
(1984)
Nucleic Acids Res
, vol.12
, pp. 3521-3534
-
-
Elseviers, D.1
Petrullo, L.A.2
Gallagher, P.J.3
-
26
-
-
77954680177
-
Two novel point mutations in clinical Staphylococcus aureus reduce linezolid susceptibility and switch on the stringent response to promote persistent infection
-
doi: 10.1371/journal.ppat.1000944
-
Gao W, Chua K, Davies JK, Newton HJ, Seemann T, Harrison PF, Holmes NE, Rhee HW, Hong JI, Hartland EL, et al. 2010. Two novel point mutations in clinical Staphylococcus aureus reduce linezolid susceptibility and switch on the stringent response to promote persistent infection. PLoS Pathog 6: e1000944. doi: 10.1371/journal.ppat.1000944.
-
(2010)
PLoS Pathog
, vol.6
-
-
Gao, W.1
Chua, K.2
Davies, J.K.3
Newton, H.J.4
Seemann, T.5
Harrison, P.F.6
Holmes, N.E.7
Rhee, H.W.8
Hong, J.I.9
Hartland, E.L.10
-
27
-
-
0024362769
-
Ribonucleoside analysis by reversed-phase high-performance liquid chromatography
-
Gehrke CW, Kuo KC. 1989. Ribonucleoside analysis by reversed-phase high-performance liquid chromatography. J Chromatogr 471: 3-36.
-
(1989)
J Chromatogr
, vol.471
, pp. 3-36
-
-
Gehrke, C.W.1
Kuo, K.C.2
-
28
-
-
58249104513
-
Identification of 8-methyladenosine as the modification catalyzed by the radical SAM methyltransferase Cfr that confers antibiotic resistance in bacteria
-
Giessing AM, Jensen SS, Rasmussen A, Hansen LH, Gondela A, Long K, Vester B, Kirpekar F. 2009. Identification of 8-methyladenosine as the modification catalyzed by the radical SAM methyltransferase Cfr that confers antibiotic resistance in bacteria. RNA 15: 327-336.
-
(2009)
RNA
, vol.15
, pp. 327-336
-
-
Giessing, A.M.1
Jensen, S.S.2
Rasmussen, A.3
Hansen, L.H.4
Gondela, A.5
Long, K.6
Vester, B.7
Kirpekar, F.8
-
30
-
-
8544280704
-
The Era-like GTPase TrmE conditionally activates gadE and glutamate-dependent acid resistance in Escherichia coli
-
Gong S, Ma Z, Foster JW. 2004. The Era-like GTPase TrmE conditionally activates gadE and glutamate-dependent acid resistance in Escherichia coli. Mol Microbiol 54: 948-961.
-
(2004)
Mol Microbiol
, vol.54
, pp. 948-961
-
-
Gong, S.1
Ma, Z.2
Foster, J.W.3
-
31
-
-
0026531622
-
Mutation of the miaA gene of Agrobacterium tumefaciens results in reduced vir gene expression
-
Gray J, Wang J, Gelvin SB. 1992. Mutation of the miaA gene of Agrobacterium tumefaciens results in reduced vir gene expression. J Bacteriol 174: 1086-1098.
-
(1992)
J Bacteriol
, vol.174
, pp. 1086-1098
-
-
Gray, J.1
Wang, J.2
Gelvin, S.B.3
-
32
-
-
33344474405
-
Fine tuning of RNA functions by modification and editing
-
(ed. S Hohmann). Springer Verlag, New York, NY
-
Grosjean H. 2005. Fine tuning of RNA functions by modification and editing. In Topics in current genetics (ed. S Hohmann). Springer Verlag, New York, NY.
-
(2005)
Topics in Current Genetics
-
-
Grosjean, H.1
-
33
-
-
79955526574
-
A radically different mechanism for S-adenosyl-methionine-dependent methyltransferases
-
Grove TL, Benner JS, Radle MI, Ahlum JH, Landgraf BJ, Krebs C, Booker SJ. 2011. A radically different mechanism for S-adenosyl-methionine-dependent methyltransferases. Science 332: 604-607.
-
(2011)
Science
, vol.332
, pp. 604-607
-
-
Grove, T.L.1
Benner, J.S.2
Radle, M.I.3
Ahlum, J.H.4
Landgraf, B.J.5
Krebs, C.6
Booker, S.J.7
-
34
-
-
79960896599
-
Identification of 5-hydroxycytidine at position 2501 concludes characterization of modified nucleosides in E. coli 23S rRNA
-
Havelund JF, Giessing AMB, Hansen T, Rasmussen A, Scott LG, Kirpekar F. 2011. Identification of 5-hydroxycytidine at position 2501 concludes characterization of modified nucleosides in E. coli 23S rRNA. J Mol Biol 411: 529-536.
-
(2011)
J Mol Biol
, vol.411
, pp. 529-536
-
-
Havelund, J.F.1
Giessing, A.M.B.2
Hansen, T.3
Rasmussen, A.4
Scott, L.G.5
Kirpekar, F.6
-
35
-
-
77956340277
-
Structural rearrangements of the ribosome at the tRNA proofreading step
-
Jenner L, Demeshkina N, Yusupova G, Yusupov M. 2010. Structural rearrangements of the ribosome at the tRNA proofreading step. Nat Struct Mol Biol 17: 1072-1078.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 1072-1078
-
-
Jenner, L.1
Demeshkina, N.2
Yusupova, G.3
Yusupov, M.4
-
36
-
-
77950467121
-
Insights into the structure, function, and evolution of the radical-SAM 23S rRNA methyltransferase Cfr that confers antibiotic resistance in bacteria
-
Kaminska KH, Purta E, Hansen LH, Bujnicki JM, Vester B, Long KS. 2010. Insights into the structure, function, and evolution of the radical-SAM 23S rRNA methyltransferase Cfr that confers antibiotic resistance in bacteria. Nucleic Acids Res 38: 1652-1663.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 1652-1663
-
-
Kaminska, K.H.1
Purta, E.2
Hansen, L.H.3
Bujnicki, J.M.4
Vester, B.5
Long, K.S.6
-
37
-
-
77950361036
-
Fine-tuning of the ribosomal decoding center by conserved methyl-modifications in the Escherichia coli 16S rRNA
-
Kimura S, Suzuki T. 2010. Fine-tuning of the ribosomal decoding center by conserved methyl-modifications in the Escherichia coli 16S rRNA. Nucleic Acids Res 38: 1341-1352.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 1341-1352
-
-
Kimura, S.1
Suzuki, T.2
-
38
-
-
0000190405
-
Limitations of translational accuracy
-
(ed. F Neidhardt et al.), ASM Press, Washington, DC
-
Kurland C, Hughes D, Ehrenberg M. 1996. Limitations of translational accuracy. In Escherichia coli and Salmonella: Cellular and molecular biology (ed. F Neidhardt et al.), pp. 979-1004. ASM Press, Washington, DC.
-
(1996)
Escherichia Coli and Salmonella: Cellular and Molecular Biology
, pp. 979-1004
-
-
Kurland, C.1
Hughes, D.2
Ehrenberg, M.3
-
39
-
-
79956294760
-
Inactivation of the indigenous methyltransferase RlmN in Staphylococcus aureus increases linezolid resistance
-
Lamarre JM, Howden BP, Mankin AS. 2011. Inactivation of the indigenous methyltransferase RlmN in Staphylococcus aureus increases linezolid resistance. Antimicrob Agents Chemother 55: 2989-2991.
-
(2011)
Antimicrob Agents Chemother
, vol.55
, pp. 2989-2991
-
-
Lamarre, J.M.1
Howden, B.P.2
Mankin, A.S.3
-
40
-
-
0028832208
-
1-Methylguanosine deficiency of tRNA influences cognate codon interaction and metabolism in Salmonella typhimurium
-
Li JN, Bjork GR. 1995. 1-Methylguanosine deficiency of tRNA influences cognate codon interaction and metabolism in Salmonella typhimurium. J Bacteriol 177: 6593-6600.
-
(1995)
J Bacteriol
, vol.177
, pp. 6593-6600
-
-
Li, J.N.1
Bjork, G.R.2
-
42
-
-
4644266760
-
5UGG) promotes reading of all four proline codons in vivo
-
5UGG) promotes reading of all four proline codons in vivo. RNA 10: 1662-1673.
-
(2004)
RNA
, vol.10
, pp. 1662-1673
-
-
Nasvall, S.J.1
Chen, P.2
Bjork, G.R.3
-
43
-
-
36248950665
-
The wobble hypothesis revisited: Uridine-5-oxyacetic acid is critical for reading of G-ending codons
-
Nasvall SJ, Chen P, Bjork GR. 2007. The wobble hypothesis revisited: Uridine-5-oxyacetic acid is critical for reading of G-ending codons. RNA 13: 2151-2164.
-
(2007)
RNA
, vol.13
, pp. 2151-2164
-
-
Nasvall, S.J.1
Chen, P.2
Bjork, G.R.3
-
44
-
-
33747125139
-
Snapshots of tRNA sulphuration via an adenylated intermediate
-
Numata T, Ikeuchi Y, Fukai S, Suzuki T, Nureki O. 2006. Snapshots of tRNA sulphuration via an adenylated intermediate. Nature 442: 419-424.
-
(2006)
Nature
, vol.442
, pp. 419-424
-
-
Numata, T.1
Ikeuchi, Y.2
Fukai, S.3
Suzuki, T.4
Nureki, O.5
-
45
-
-
0020511286
-
The role of 2-methylthio-N6-isopentenyladenosine in readthrough and suppression of nonsense codons in Escherichia coli
-
Petrullo LA, Gallagher PJ, Elseviers D. 1983. The role of 2-methylthio-N6-isopentenyladenosine in readthrough and suppression of nonsense codons in Escherichia coli. Mol Gen Genet 190: 289-294.
-
(1983)
Mol Gen Genet
, vol.190
, pp. 289-294
-
-
Petrullo, L.A.1
Gallagher, P.J.2
Elseviers, D.3
-
46
-
-
4444221565
-
UCSF Chimera - A visualization system for exploratory research and analysis
-
Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE. 2004. UCSF Chimera - a visualization system for exploratory research and analysis. J Comput Chem 25: 1605-1612.
-
(2004)
J Comput Chem
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
47
-
-
0037134469
-
Enzymatic modification of tRNAs: MiaB is an iron-sulfur protein
-
Pierrel F, Bjork GR, Fontecave M, Atta M. 2002. Enzymatic modification of tRNAs: MiaB is an iron-sulfur protein. J Biol Chem 277: 13367-13370.
-
(2002)
J Biol Chem
, vol.277
, pp. 13367-13370
-
-
Pierrel, F.1
Bjork, G.R.2
Fontecave, M.3
Atta, M.4
-
48
-
-
34547659860
-
Recombinant RNA technology: The tRNA scaffold
-
Ponchon L, Dardel F. 2007. Recombinant RNA technology: The tRNA scaffold. Nat Methods 4: 571-576.
-
(2007)
Nat Methods
, vol.4
, pp. 571-576
-
-
Ponchon, L.1
Dardel, F.2
-
49
-
-
66749152587
-
A generic protocol for the expression and purification of recombinant RNA in Escherichia coli using a tRNA scaffold
-
Ponchon L, Beauvais G, Nonin-Lecomte S, Dardel F. 2009. A generic protocol for the expression and purification of recombinant RNA in Escherichia coli using a tRNA scaffold. Nat Protoc 4: 947-959.
-
(2009)
Nat Protoc
, vol.4
, pp. 947-959
-
-
Ponchon, L.1
Beauvais, G.2
Nonin-Lecomte, S.3
Dardel, F.4
-
50
-
-
84859436530
-
NCBI Reference Sequences (RefSeq): Current status, new features and genome annotation policy
-
Pruitt KD, Tatusova T, Brown GR, Maglott DR. 2012. NCBI Reference Sequences (RefSeq): Current status, new features and genome annotation policy. Nucleic Acids Res 40: D130-D135.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Pruitt, K.D.1
Tatusova, T.2
Brown, G.R.3
Maglott, D.R.4
-
51
-
-
0023338540
-
oc a more efficient suppressor
-
oc a more efficient suppressor. EMBO J 6: 1499-1506.
-
(1987)
EMBO J
, vol.6
, pp. 1499-1506
-
-
Raftery, L.A.1
Yarus, M.2
-
52
-
-
79251557798
-
Nascent peptide in the ribosome exit tunnel affects functional properties of the A-site of the peptidyl transferase center
-
Ramu H, Vazquez-Laslop N, Klepacki D, Dai Q, Piccirilli J, Micura R, Mankin AS. 2011. Nascent peptide in the ribosome exit tunnel affects functional properties of the A-site of the peptidyl transferase center. Mol Cell 41: 321-330.
-
(2011)
Mol Cell
, vol.41
, pp. 321-330
-
-
Ramu, H.1
Vazquez-Laslop, N.2
Klepacki, D.3
Dai, Q.4
Piccirilli, J.5
Micura, R.6
Mankin, A.S.7
-
53
-
-
0842283048
-
Molecular characterization of a glucose-inhibited division gene, gidA, that regulates cytotoxic enterotoxin of Aeromonas hydrophila
-
Sha J, Kozlova EV, Fadl AA, Olano JP, Houston CW, Peterson JW, Chopra AK. 2004. Molecular characterization of a glucose-inhibited division gene, gidA, that regulates cytotoxic enterotoxin of Aeromonas hydrophila. Infect Immun 72: 1084-1095.
-
(2004)
Infect Immun
, vol.72
, pp. 1084-1095
-
-
Sha, J.1
Kozlova, E.V.2
Fadl, A.A.3
Olano, J.P.4
Houston, C.W.5
Peterson, J.W.6
Chopra, A.K.7
-
54
-
-
34548767727
-
Chaplet column chromatography: Isolation of a large set of individual RNAs in a single step
-
Suzuki T, Suzuki T. 2007. Chaplet column chromatography: Isolation of a large set of individual RNAs in a single step. Methods Enzymol 425: 231-239.
-
(2007)
Methods Enzymol
, vol.425
, pp. 231-239
-
-
Suzuki, T.1
Suzuki, T.2
-
55
-
-
38049060422
-
The methyltransferase YfgB/RlmN is responsible for modification of adenosine 2503 in 23S rRNA
-
Toh SM, Xiong L, Bae T, Mankin AS. 2008. The methyltransferase YfgB/RlmN is responsible for modification of adenosine 2503 in 23S rRNA. RNA 14: 98-106.
-
(2008)
RNA
, vol.14
, pp. 98-106
-
-
Toh, S.M.1
Xiong, L.2
Bae, T.3
Mankin, A.S.4
-
56
-
-
0035801515
-
Improvement of reading frame maintenance is a common function for several tRNA modifications
-
Urbonavicius J, Qian Q, Durand JM, Hagervall TG, Bjork GR. 2001. Improvement of reading frame maintenance is a common function for several tRNA modifications. EMBO J 20: 4863-4873.
-
(2001)
EMBO J
, vol.20
, pp. 4863-4873
-
-
Urbonavicius, J.1
Qian, Q.2
Durand, J.M.3
Hagervall, T.G.4
Bjork, G.R.5
-
57
-
-
66449107983
-
Accuracy modulating mutations of the ribosomal protein S4-S5 interface do not necessarily destabilize the rps4-rps5 protein-protein interaction
-
Vallabhaneni H, Farabaugh PJ. 2009. Accuracy modulating mutations of the ribosomal protein S4-S5 interface do not necessarily destabilize the rps4-rps5 protein-protein interaction. RNA 15: 1100-1109.
-
(2009)
RNA
, vol.15
, pp. 1100-1109
-
-
Vallabhaneni, H.1
Farabaugh, P.J.2
-
58
-
-
0021722248
-
Increased translational fidelity caused by the antibiotic kasugamycin and ribosomal ambiguity in mutants harbouring the ksgA gene
-
van Buul CP, Visser W, van Knippenberg PH. 1984. Increased translational fidelity caused by the antibiotic kasugamycin and ribosomal ambiguity in mutants harbouring the ksgA gene. FEBS Lett 177: 119-124.
-
(1984)
FEBS Lett
, vol.177
, pp. 119-124
-
-
Van Buul, C.P.1
Visser, W.2
Van Knippenberg, P.H.3
-
59
-
-
77956884449
-
The key function of a conserved and modified rRNA residue in the ribosomal response to the nascent peptide
-
Vazquez-Laslop N, Ramu H, Klepacki D, Kannan K, Mankin AS. 2010. The key function of a conserved and modified rRNA residue in the ribosomal response to the nascent peptide. EMBO J 29: 3108-3117.
-
(2010)
EMBO J
, vol.29
, pp. 3108-3117
-
-
Vazquez-Laslop, N.1
Ramu, H.2
Klepacki, D.3
Kannan, K.4
Mankin, A.S.5
-
60
-
-
79952748781
-
RNA methylation by radical SAM enzymes RlmN and Cfr proceeds via methylene transfer and hydride shift
-
Yan F, Fujimori DG. 2011. RNA methylation by radical SAM enzymes RlmN and Cfr proceeds via methylene transfer and hydride shift. Proc Natl Acad Sci 108: 3930-3934.
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 3930-3934
-
-
Yan, F.1
Fujimori, D.G.2
-
61
-
-
77949777140
-
RlmN and Cfr are radical SAM enzymes involved in methylation of ribosomal RNA
-
Yan F, LaMarre JM, Rohrich R, Wiesner J, Jomaa H, Mankin AS, Fujimori DG. 2010. RlmN and Cfr are radical SAM enzymes involved in methylation of ribosomal RNA. J Am Chem Soc 132: 3953-3964.
-
(2010)
J Am Chem Soc
, vol.132
, pp. 3953-3964
-
-
Yan, F.1
LaMarre, J.M.2
Rohrich, R.3
Wiesner, J.4
Jomaa, H.5
Mankin, A.S.6
Fujimori, D.G.7
-
62
-
-
0019913580
-
Translational efficiency of transfer RNA's: Uses of an extended anticodon
-
Yarus M. 1982. Translational efficiency of transfer RNA's: Uses of an extended anticodon. Science 218: 646-652.
-
(1982)
Science
, vol.218
, pp. 646-652
-
-
Yarus, M.1
-
63
-
-
0023027061
-
The translational efficiency of tRNA is a property of the anticodon arm
-
Yarus M, Cline S, Raftery L, Wier P, Bradley D. 1986. The translational efficiency of tRNA is a property of the anticodon arm. J Biol Chem 261: 10496-10505.
-
(1986)
J Biol Chem
, vol.261
, pp. 10496-10505
-
-
Yarus, M.1
Cline, S.2
Raftery, L.3
Wier, P.4
Bradley, D.5
-
64
-
-
0043210520
-
The GTPase activity and C-terminal cysteine of the Escherichia coli MnmE protein are essential for its tRNA modifying function
-
Yim L, Marti"nez-Vicente M, Villarroya M, Aguado C, Knecht E, Armengod ME. 2003. The GTPase activity and C-terminal cysteine of the Escherichia coli MnmE protein are essential for its tRNA modifying function. J Biol Chem 278: 28378-28387.
-
(2003)
J Biol Chem
, vol.278
, pp. 28378-28387
-
-
Yim, L.1
Martinez-Vicente, M.2
Villarroya, M.3
Aguado, C.4
Knecht, E.5
Armengod, M.E.6
-
65
-
-
33845672606
-
Further insights into the tRNA modification process controlled by proteins MnmE and GidA of Escherichia coli
-
Yim L, Moukadiri I, Bjork GR, Armengod ME. 2006. Further insights into the tRNA modification process controlled by proteins MnmE and GidA of Escherichia coli. Nucleic Acids Res 34: 5892-5905.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 5892-5905
-
-
Yim, L.1
Moukadiri, I.2
Bjork, G.R.3
Armengod, M.E.4
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