메뉴 건너뛰기




Volumn 7, Issue 2, 2010, Pages 237-247

Detection of RNA modifications

Author keywords

Analysis; Chromatography; Detection; Method; Quantification; Reactivity; RNA modification; Sequencing; Transcriptome

Indexed keywords

NUCLEOSIDE; TRANSCRIPTOME; TRANSFER RNA; ENZYME; NUCLEOTIDE; RNA;

EID: 77953682110     PISSN: 15476286     EISSN: 15558584     Source Type: Journal    
DOI: 10.4161/rna.7.2.11468     Document Type: Review
Times cited : (102)

References (107)
  • 1
    • 84957846754 scopus 로고
    • The quantitative separation of purines pyrimidines and nucleosides by paper chromatography
    • Hotchkiss RD. The quantitative separation of purines, pyrimidines and nucleosides by paper chromatography. J Biol Chem 1948; 175:315-32.
    • (1948) J Biol Chem , vol.175 , pp. 315-332
    • Hotchkiss, R.D.1
  • 2
    • 77950476036 scopus 로고    scopus 로고
    • 5-methylcytosine in RNA: Detection, enzymatic formation and biological functions
    • in press
    • Motorin Y, Lyko F, Helm M. 5-methylcytosine in RNA: detection, enzymatic formation and biological functions. Nucleic Acids Research 2009; in press.
    • (2009) Nucleic Acids Research
    • Motorin, Y.1    Lyko, F.2    Helm, M.3
  • 3
    • 0001616204 scopus 로고
    • Studies on Polynucleotides Xli. Purification of Phenylalanine-Specific Transfer Ribonucleic Acid from Yeast by Countercurrent Distribution
    • Hoskinson RM, Khorana HG. Studies on Polynucleotides Xli. Purification of Phenylalanine-Specific Transfer Ribonucleic Acid from Yeast by Countercurrent Distribution. J Biol Chem 1965;240:2129-34.
    • (1965) J Biol Chem , vol.240 , pp. 2129-2134
    • Hoskinson, R.M.1    Khorana, H.G.2
  • 4
    • 34548801413 scopus 로고    scopus 로고
    • Detection of enzymatic activity of transfer RNA modification enzymes using radiolabeled tRNA substrates
    • Grosjean H, Droogmans L, Roovers M, Keith G. Detection of enzymatic activity of transfer RNA modification enzymes using radiolabeled tRNA substrates. Methods Enzymol 2007; 425:55-101.
    • (2007) Methods Enzymol , vol.425 , pp. 55-101
    • Grosjean, H.1    Droogmans, L.2    Roovers, M.3    Keith, G.4
  • 5
    • 0025683270 scopus 로고
    • Preparation and enzymatic hydrolysis of DNA and RNA for mass spectrometry
    • Crain PF. Preparation and enzymatic hydrolysis of DNA and RNA for mass spectrometry. Methods Enzymol 1990; 193:782-90.
    • (1990) Methods Enzymol , vol.193 , pp. 782-790
    • Crain, P.F.1
  • 6
    • 0033081419 scopus 로고    scopus 로고
    • Search for differences in post-transcriptional modification patterns of mitochondrial DNA-encoded wild-type and mutant human tRNA(Lys) and tRNA(Leu(UUR))
    • DOI 10.1093/nar/27.3.756
    • Helm M, Florentz C, Chomyn A, Attardi G. Search for differences in post-transcriptional modification patterns of mitochondrial DNA-encoded wild-type and mutant human tRNALys and tRNALeu(UUR). Nucleic Acids Res 1999; 27:756-63. (Pubitemid 29209362)
    • (1999) Nucleic Acids Research , vol.27 , Issue.3 , pp. 756-763
    • Helm, M.1    Florentz, C.2    Chomyn, A.3    Attardi, G.4
  • 7
    • 0017385933 scopus 로고
    • Use of specific endonuclease cleavage in RNA sequencing
    • Gupta RC, Randerath K. Use of specific endonuclease cleavage in RNA sequencing. Nucleic Acids Res 1977;4:1957-78. (Pubitemid 8132374)
    • (1977) Nucleic Acids Research , vol.4 , Issue.6 , pp. 1957-1978
    • Gupta, R.C.1    Randerath, K.2
  • 8
    • 0017822238 scopus 로고
    • A different approach to RNA sequencing
    • Stanley J, Vassilenko S. A different approach to RNA sequencing. Nature 1978; 274:87-9.
    • (1978) Nature , vol.274 , pp. 87-89
    • Stanley, J.1    Vassilenko, S.2
  • 9
    • 38049039329 scopus 로고    scopus 로고
    • Use of DNAzymes for site-specific analysis of ribonucleotide modifications
    • Hengesbach M, Meusburger M, Lyko F, Helm M. Use of DNAzymes for site-specific analysis of ribonucleotide modifications. RNA 2008; 14:180-7.
    • (2008) RNA , vol.14 , pp. 180-187
    • Hengesbach, M.1    Meusburger, M.2    Lyko, F.3    Helm, M.4
  • 10
    • 2442643944 scopus 로고    scopus 로고
    • Detection and quantitation of RNA base modifications
    • DOI 10.1261/rna.7110804
    • Zhao X, Yu YT. Detection and quantitation of RNA base modifications. RNA 2004; 10:996-1002. (Pubitemid 38669772)
    • (2004) RNA , vol.10 , Issue.6 , pp. 996-1002
    • Zhao, X.1    Yu, Y.-T.2
  • 11
    • 0018787015 scopus 로고
    • Rapid print-readout technique for sequencing of RNA's containing modified nucleotides
    • Gupta RC, Randerath K. Rapid print-readout technique for sequencing of RNA's containing modified nucleotides. Nucleic Acids Res 1979; 6:3443-58.
    • (1979) Nucleic Acids Res , vol.6 , pp. 3443-3458
    • Gupta, R.C.1    Randerath, K.2
  • 12
    • 0017193537 scopus 로고
    • A double-labeling procedure for sequence analysis of picomole amounts of nonradioactive RNA fragments
    • Gupta RC, Randerath E, Randerath K. A double-labeling procedure for sequence analysis of picomole amounts of nonradioactive RNA fragments. Nucleic Acids Res 1976; 3:2895-914.
    • (1976) Nucleic Acids Res , vol.3 , pp. 2895-2914
    • Gupta, R.C.1    Randerath, E.2    Randerath, K.3
  • 13
    • 0015062145 scopus 로고
    • Application of a tritium derivative method to human brain and brain tumor transfer RNA analysis
    • Randerath K. Application of a tritium derivative method to human brain and brain tumor transfer RNA analysis. Cancer Res 1971; 31:658-61.
    • (1971) Cancer Res , vol.31 , pp. 658-661
    • Randerath, K.1
  • 14
    • 0016712078 scopus 로고
    • The methylation state of poly A-containing messenger RNA from cultured hamster cells
    • Dubin DT, Taylor RH. The methylation state of poly A-containing messenger RNA from cultured hamster cells. Nucleic Acids Res 1975; 2:1653-68.
    • (1975) Nucleic Acids Res , vol.2 , pp. 1653-1668
    • Dubin, D.T.1    Taylor, R.H.2
  • 16
    • 0015278178 scopus 로고
    • Minor componens in transfer RNA: Their characterization, location and function
    • Nishimura S. Minor componens in transfer RNA: Their characterization, location and function. Prog Nucl Acids Res Mol Biol 1972; 12:50-85.
    • (1972) Prog Nucl Acids Res Mol Biol , vol.12 , pp. 50-85
    • Nishimura, S.1
  • 17
    • 0014421736 scopus 로고
    • Gas-liquid chromatographic analysis of nucleic acid components
    • Gehrke CW, Ruyle CD. Gas-liquid chromatographic analysis of nucleic acid components. J Chromatogr 1968; 38:473-91.
    • (1968) J Chromatogr , vol.38 , pp. 473-491
    • Gehrke, C.W.1    Ruyle, C.D.2
  • 18
    • 0017298134 scopus 로고
    • Gas-liquid chromatography of nucleosides. Derivatization and chromatography
    • Gehrke CW, Patel AB. Gas-liquid chromatography of nucleosides. Derivatization and chromatography. J Chromatogr 1976; 123:335-45.
    • (1976) J Chromatogr , vol.123 , pp. 335-345
    • Gehrke, C.W.1    Patel, A.B.2
  • 20
    • 0015241563 scopus 로고
    • Analysis of base composition of RNA and DNA hydrolysates by gas-liquid chromatography
    • Lakings DB, Gehrke CW. Analysis of base composition of RNA and DNA hydrolysates by gas-liquid chromatography. J Chromatogr 1971; 62:347-67.
    • (1971) J Chromatogr , vol.62 , pp. 347-367
    • Lakings, D.B.1    Gehrke, C.W.2
  • 21
    • 0014951911 scopus 로고
    • The determination of the base composition of RNA by high-pressure cation-exchange chromatography
    • Burtis CA. The determination of the base composition of RNA by high-pressure cation-exchange chromatography. J Chromatogr 1970; 51:183-94.
    • (1970) J Chromatogr , vol.51 , pp. 183-194
    • Burtis, C.A.1
  • 22
    • 0014428860 scopus 로고
    • Rapid ion-exchange chromatographic microanalysis of ultraviolet-absorbing materials and its application to nucleosides
    • Uziel M, Koh CK, Cohn WE. Rapid ion-exchange chromatographic microanalysis of ultraviolet-absorbing materials and its application to nucleosides. Anal Biochem 1968; 25:77-98.
    • (1968) Anal Biochem , vol.25 , pp. 77-98
    • Uziel, M.1    Koh, C.K.2    Cohn, W.E.3
  • 23
    • 0024362769 scopus 로고
    • Ribonucleoside analysis by reversed-phase high-performance liquid chromatography
    • DOI 10.1016/S0021-9673(00)94152-9
    • Gehrke CW, Kuo KC. Ribonucleoside analysis by reversed-phase high-performance liquid chromatography. J Chromatogr 1989; 471:3-36. (Pubitemid 19144813)
    • (1989) Journal of Chromatography , vol.471 , pp. 3-36
    • Gehrke, C.W.1    Kuo, K.C.2
  • 24
    • 0037172935 scopus 로고    scopus 로고
    • Thiopurine methyltransferase activity: New conditions for reversed-phase high-performance liquid chromatographic assay without extraction and genotypic-phenotypic correlation
    • Anglicheau D, Sanquer S, Loriot MA, Beaune P, Thervet E. Thiopurine methyltransferase activity: new conditions for reversed-phase high-performance liquid chromatographic assay without extraction and genotypic-phenotypic correlation. J Chromatogr B Analyt Technol Biomed Life Sci 2002; 773:119-27.
    • (2002) J Chromatogr B Analyt Technol Biomed Life Sci , vol.773 , pp. 119-127
    • Anglicheau, D.1    Sanquer, S.2    Loriot, M.A.3    Beaune, P.4    Thervet, E.5
  • 26
    • 0025612935 scopus 로고
    • Analysis of RNA hydrolyzates by liquid chromatography-mass spectrometry
    • Pomerantz SC, McCloskey JA. Analysis of RNA hydrolyzates by liquid chromatography-mass spectrometry. Methods Enzymol 1990; 193:796-824.
    • (1990) Methods Enzymol , vol.193 , pp. 796-824
    • Pomerantz, S.C.1    McCloskey, J.A.2
  • 27
    • 0042704187 scopus 로고    scopus 로고
    • Detection and Structure Analysis of Modified Nucleosides in RNA by Mass Spectrometry
    • Grosjean H, Benne R, eds. Washington DC: Am Soc Microbiol Press
    • Crain PF. Detection and Structure Analysis of Modified Nucleosides in RNA by Mass Spectrometry. In: Grosjean H, Benne R, eds. Modification and Editing of RNA. Washington DC: Am Soc Microbiol Press 1998; 47-84.
    • (1998) Modification and Editing of RNA , pp. 47-84
    • Crain, P.F.1
  • 28
    • 0028226958 scopus 로고
    • A novel modified nucleoside found at the first position of the anticodon of methionine tRNA from bovine liver mitochondria
    • Moriya J, Yokogawa T, Wakita K, Ueda T, Nishikawa K, Crain PF, et al. A novel modified nucleoside found at the first position of the anticodon of methionine tRNA from bovine liver mitochondria. Biochemistry 1994; 33:2234-9.
    • (1994) Biochemistry , vol.33 , pp. 2234-2239
    • Moriya, J.1    Yokogawa, T.2    Wakita, K.3    Ueda, T.4    Nishikawa, K.5    Crain, P.F.6
  • 30
    • 0026437551 scopus 로고
    • Structure determination of two new amino acid-containing derivatives of adenosine from tRNA of thermophilic bacteria and archaea
    • Reddy DM, Crain PF, Edmonds CG, Gupta R, Hashizume T, Stetter KO, et al. Structure determination of two new amino acid-containing derivatives of adenosine from tRNA of thermophilic bacteria and archaea. Nucleic Acids Res 1992; 20:5607-15.
    • (1992) Nucleic Acids Res , vol.20 , pp. 5607-5615
    • Reddy, D.M.1    Crain, P.F.2    Edmonds, C.G.3    Gupta, R.4    Hashizume, T.5    Stetter, K.O.6
  • 33
    • 58149178172 scopus 로고    scopus 로고
    • Analysis of modified nucleosides in the urine of patients with malignant cancer by liquid chromatography/electrospray ionization mass spectrometry
    • Li HY, Wang SM, Liu HM, Li J, Han D, Bu SS, et al. Analysis of modified nucleosides in the urine of patients with malignant cancer by liquid chromatography/electrospray ionization mass spectrometry. Rapid Commun Mass Spectrom 2008; 22:3161-71.
    • (2008) Rapid Commun Mass Spectrom , vol.22 , pp. 3161-3171
    • Li, H.Y.1    Wang, S.M.2    Liu, H.M.3    Li, J.4    Han, D.5    Bu, S.S.6
  • 34
  • 35
    • 23044486038 scopus 로고    scopus 로고
    • Detection of the common RNA nucleoside pseudouridine in mixtures of oligonucleotides by mass spectrometry
    • Pomerantz SC, McCloskey JA. Detection of the common RNA nucleoside pseudouridine in mixtures of oligonucleotides by mass spectrometry. Anal Chem 2005; 77:4687-97.
    • (2005) Anal Chem , vol.77 , pp. 4687-4697
    • Pomerantz, S.C.1    McCloskey, J.A.2
  • 36
    • 46749136340 scopus 로고    scopus 로고
    • Mass spectrometry of the fifth nucleoside: A review of the identification of pseudouridine in nucleic acids
    • Durairaj A, Limbach PA. Mass spectrometry of the fifth nucleoside: a review of the identification of pseudouridine in nucleic acids. Anal Chim Acta 2008; 623:117-25.
    • (2008) Anal Chim Acta , vol.623 , pp. 117-125
    • Durairaj, A.1    Limbach, P.A.2
  • 37
    • 33645943707 scopus 로고    scopus 로고
    • Influence of phylogeny on posttranscriptional modification of rRNA in thermophilic prokaryotes: The complete modification map of 16S rRNA of Thermus thermophilus
    • Guymon R, Pomerantz SC, Crain PF, McCloskey JA. Influence of phylogeny on posttranscriptional modification of rRNA in thermophilic prokaryotes: the complete modification map of 16S rRNA of Thermus thermophilus. Biochemistry 2006; 45:4888-99.
    • (2006) Biochemistry , vol.45 , pp. 4888-4899
    • Guymon, R.1    Pomerantz, S.C.2    Crain, P.F.3    McCloskey, J.A.4
  • 38
    • 66049158949 scopus 로고    scopus 로고
    • A chemical screen for biological small molecule-RNA conjugates reveals CoA-linked RNA
    • Kowtoniuk WE, Shen Y, Heemstra JM, Agarwal I, Liu DR. A chemical screen for biological small molecule-RNA conjugates reveals CoA-linked RNA. Proc Natl Acad Sci USA 2009; 106:7768-73.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 7768-7773
    • Kowtoniuk, W.E.1    Shen, Y.2    Heemstra, J.M.3    Agarwal, I.4    Liu, D.R.5
  • 40
    • 26444540378 scopus 로고    scopus 로고
    • Pseudouridine detection improvement by derivatization with methyl vinyl sulfone and capillary HPLC-mass spectrometry
    • Emmerechts G, Herdewijn P, Rozenski J. Pseudouridine detection improvement by derivatization with methyl vinyl sulfone and capillary HPLC-mass spectrometry. J Chromatogr B Analyt Technol Biomed Life Sci 2005;825:233-8.
    • (2005) J Chromatogr B Analyt Technol Biomed Life Sci , vol.825 , pp. 233-238
    • Emmerechts, G.1    Herdewijn, P.2    Rozenski, J.3
  • 41
    • 67349099918 scopus 로고    scopus 로고
    • Multiple endonucleases improve MALDI-MS signature digestion product detection of bacterial transfer RNAs
    • Hossain M, Limbach PA. Multiple endonucleases improve MALDI-MS signature digestion product detection of bacterial transfer RNAs. Anal Bioanal Chem 2009; 394:1125-35.
    • (2009) Anal Bioanal Chem , vol.394 , pp. 1125-1135
    • Hossain, M.1    Limbach, P.A.2
  • 42
    • 0032536125 scopus 로고    scopus 로고
    • Capillary electrophoresis of urinary normal and modified nucleosides of cancer patients
    • DOI 10.1016/S0021-9673(97)00915-1, PII S0021967397009151
    • Liebich HM, Xu G, Di Stefano C, Lehmann R. Capillary electrophoresis of urinary normal and modified nucleosides of cancer patients. J Chromatogr A 1998; 793:341-7. (Pubitemid 28044259)
    • (1998) Journal of Chromatography a , vol.793 , Issue.2 , pp. 341-347
    • Liebich, H.M.1    Xu, G.2    Di Stefano, C.3    Lehmann, R.4
  • 43
    • 16244383854 scopus 로고    scopus 로고
    • Chromatographic, capillary electrophoretic and matrix-assisted laser desorption ionization time-of-flight mass spectrometry analysis of urinary modified nucleosides as tumor markers
    • DOI 10.1016/j.chroma.2004.12.055, 27th International Symposium on Capillary Chromatography
    • Liebich HM, Muller-Hagedorn S, Klaus F, Meziane K, Kim KR, Frickenschmidt A, et al. Chromatographic, capillary electrophoretic and matrix-assisted laser desorption ionization time-of-flight mass spectrometry analysis of urinary modified nucleosides as tumor markers. J Chromatogr A 2005; 1071:271-5. (Pubitemid 40461785)
    • (2005) Journal of Chromatography a , vol.1071 , Issue.1-2 , pp. 271-275
    • Liebich, H.M.1    Muller-Hagedorn, S.2    Klaus, F.3    Meziane, K.4    Kim, K.-R.5    Frickenschmidt, A.6    Kammerer, B.7
  • 44
    • 0032545414 scopus 로고    scopus 로고
    • Analysis of nucleotides by capillary electrophoresis
    • Geldart SE, Brown PR. Analysis of nucleotides by capillary electrophoresis. J Chromatogr A 1998; 828:317-36.
    • (1998) J Chromatogr A , vol.828 , pp. 317-336
    • Geldart, S.E.1    Brown, P.R.2
  • 45
    • 34447269963 scopus 로고    scopus 로고
    • Analysis of nucleotides by pressure-assisted capillary electrophoresis-mass spectrometry using silanol mask technique
    • DOI 10.1016/j.chroma.2007.05.054, PII S0021967307009144
    • Soga T, Ishikawa T, Igarashi S, Sugawara K, Kakazu Y, Tomita M. Analysis of nucleotides by pressure-assisted capillary electrophoresis-mass spectrometry using silanol mask technique. J Chromatogr A 2007;1159:125-33. (Pubitemid 47048262)
    • (2007) Journal of Chromatography a , vol.1159 , Issue.1-2 , pp. 125-133
    • Soga, T.1    Ishikawa, T.2    Igarashi, S.3    Sugawara, K.4    Kakazu, Y.5    Tomita, M.6
  • 47
    • 36349012418 scopus 로고    scopus 로고
    • RNA analysis by MEKC with LIF detection
    • Cornelius MG, Schmeiser HH. RNA analysis by MEKC with LIF detection. Electrophoresis 2007;28:3901-7.
    • (2007) Electrophoresis , vol.28 , pp. 3901-3907
    • Cornelius, M.G.1    Schmeiser, H.H.2
  • 48
    • 0030899226 scopus 로고    scopus 로고
    • A new method for detecting sites of 2′-O-methylation in RNA molecules
    • Yu YT, Shu MD, Steitz JA. A new method for detecting sites of 2′-O-methylation in RNA molecules. RNA 1997; 3:324-31.
    • (1997) RNA , vol.3 , pp. 324-331
    • Yu, Y.T.1    Shu, M.D.2    Steitz, J.A.3
  • 49
  • 50
    • 23944493378 scopus 로고    scopus 로고
    • Methylation protects miRNAs and siRNAs from a 3′-end uridylation activity in Arabidopsis
    • DOI 10.1016/j.cub.2005.07.029, PII S0960982205007736
    • Li J, Yang Z, Yu B, Liu J, Chen X. Methylation protects miRNAs and siRNAs from a 3′-end uridylation activity in Arabidopsis. Curr Biol 2005; 15:1501-7. (Pubitemid 41187490)
    • (2005) Current Biology , vol.15 , Issue.16 , pp. 1501-1507
    • Li, J.1    Yang, Z.2    Yu, B.3    Liu, J.4    Chen, X.5
  • 52
    • 34548726200 scopus 로고    scopus 로고
    • Identification of modified residues in RNAs by reverse transcription-based methods
    • Motorin Y, Muller S, Behm-Ansmant I, Branlant C. Identification of modified residues in RNAs by reverse transcription-based methods. Methods Enzymol 2007;425:21-53.
    • (2007) Methods Enzymol , vol.425 , pp. 21-53
    • Motorin, Y.1    Muller, S.2    Behm-Ansmant, I.3    Branlant, C.4
  • 53
    • 0022422352 scopus 로고
    • Conformation of yeast 18S rRNA. Direct chemical probing of the 5′ domain in ribosomal subunits and in deproteinized RNA by reverse transcriptase mapping of dimethyl sulfate-accessible
    • Lempereur L, Nicoloso M, Riehl N, Ehresmann C, Ehresmann B, Bachellerie JP. Conformation of yeast 18S rRNA. Direct chemical probing of the 5′ domain in ribosomal subunits and in deproteinized RNA by reverse transcriptase mapping of dimethyl sulfate-accessible. Nucleic Acids Res 1985; 13:8339-57.
    • (1985) Nucleic Acids Res , vol.13 , pp. 8339-8357
    • Lempereur, L.1    Nicoloso, M.2    Riehl, N.3    Ehresmann, C.4    Ehresmann, B.5    Bachellerie, J.P.6
  • 56
    • 33644872214 scopus 로고    scopus 로고
    • Isolation of a site-specifically modified RNA from an unmodified transcript
    • Hou YM, Li Z, Gamper H. Isolation of a site-specifically modified RNA from an unmodified transcript. Nucleic Acids Res 2006; 34:21.
    • (2006) Nucleic Acids Res , vol.34 , pp. 21
    • Hou, Y.M.1    Li, Z.2    Gamper, H.3
  • 57
    • 33751088560 scopus 로고    scopus 로고
    • A systematic, ligation-based approach to study RNA modifications
    • DOI 10.1261/rna.208906
    • Saikia M, Dai Q, Decatur WA, Fournier MJ, Piccirilli JA, Pan T. A systematic, ligation-based approach to study RNA modifications. Rna 2006; 12:2025-33. (Pubitemid 44771762)
    • (2006) RNA , vol.12 , Issue.11 , pp. 2025-2033
    • Saikia, M.1    Dai, Q.2    Decatur, W.A.3    Fournier, M.J.4    Piccirilli, J.A.5    Pan, T.6
  • 59
    • 28344451166 scopus 로고    scopus 로고
    • Optimizing splinted ligation of highly structured small RNAs
    • DOI 10.1261/rna.2170705
    • Kurschat WC, Muller J, Wombacher R, Helm M. Optimizing splinted ligation of highly structured small RNAs. RNA 2005; 11:1909-14. (Pubitemid 41720039)
    • (2005) RNA , vol.11 , Issue.12 , pp. 1909-1914
    • Kurschat, W.C.1    Muller, J.2    Wombacher, R.3    Helm, M.4
  • 60
    • 33845892140 scopus 로고    scopus 로고
    • Analysis of 2′-O-methylated nucleosides and pseudouridines in ribosomal RNAs using DNAzymes
    • DOI 10.1016/j.ab.2006.11.001, PII S0003269706008086
    • Buchhaupt M, Peifer C, Entian KD. Analysis of 2′-O-methylated nucleosides and pseudouridines in ribosomal RNAs using DNAzymes. Anal Biochem 2007; 361:102-8. (Pubitemid 46027002)
    • (2007) Analytical Biochemistry , vol.361 , Issue.1 , pp. 102-108
    • Buchhaupt, M.1    Peifer, C.2    Entian, K.-D.3
  • 62
    • 0015507951 scopus 로고
    • Preparation and characterization of fragments from yeast tRNA phe
    • Harbers K, Thiebe R, Zachau HG. Preparation and characterization of fragments from yeast tRNA phe. Eur J Biochem 1972; 26:132-43.
    • (1972) Eur J Biochem , vol.26 , pp. 132-143
    • Harbers, K.1    Thiebe, R.2    Zachau, H.G.3
  • 63
    • 0016724277 scopus 로고
    • Tertiary structure interactions of 7-methylguanosine in yeast tRNA Phe as studied by borohydride reduction
    • Wintermeyer W, Zachau HG. Tertiary structure interactions of 7-methylguanosine in yeast tRNA Phe as studied by borohydride reduction. FEBS Lett 1975;58:306-9.
    • (1975) FEBS Lett , vol.58 , pp. 306-309
    • Wintermeyer, W.1    Zachau, H.G.2
  • 64
    • 0018338913 scopus 로고
    • Incorporation of amines or hydrazines into tRNA replacing wybutine or dihydrouracil
    • Wintermeyer W, Schleich HG, Zachau HG. Incorporation of amines or hydrazines into tRNA replacing wybutine or dihydrouracil. Methods Enzymol 1979; 59:110-21.
    • (1979) Methods Enzymol , vol.59 , pp. 110-121
    • Wintermeyer, W.1    Schleich, H.G.2    Zachau, H.G.3
  • 65
    • 0022019308 scopus 로고
    • Specific fragmentation of tRNA and rRNA at a 7-methylguanine residue in the presence of methylated carrier RNA
    • Zueva VS, Mankin AS, Bogdanov AA, Baratova LA. Specific fragmentation of tRNA and rRNA at a 7-methylguanine residue in the presence of methylated carrier RNA. Eur J Biochem 1985; 146:679-87.
    • (1985) Eur J Biochem , vol.146 , pp. 679-687
    • Zueva, V.S.1    Mankin, A.S.2    Bogdanov, A.A.3    Baratova, L.A.4
  • 66
    • 0018459544 scopus 로고
    • Direct chemical method for sequencing RNA
    • Peattie DA. Direct chemical method for sequencing RNA. Proc Natl Acad Sci USA 1979; 76:1760-4.
    • (1979) Proc Natl Acad Sci USA , vol.76 , pp. 1760-1764
    • Peattie, D.A.1
  • 68
    • 0029049551 scopus 로고
    • Macromolecular arrangement in the aminoacyl-tRNA.elongation factor Tu.GTP ternary complex. A fluorescence energy transfer study
    • Watson BS, Hazlett TL, Eccleston JF, Davis C, Jameson DM, Johnson AE. Macromolecular arrangement in the aminoacyl-tRNA.elongation factor Tu.GTP ternary complex. A fluorescence energy transfer study. Biochemistry 1995; 34:7904-12.
    • (1995) Biochemistry , vol.34 , pp. 7904-7912
    • Watson, B.S.1    Hazlett, T.L.2    Eccleston, J.F.3    Davis, C.4    Jameson, D.M.5    Johnson, A.E.6
  • 69
    • 0018863379 scopus 로고
    • Characterisation of a new fully active fluorescent derivative of E. coli tRNA Phe
    • Plumbridge JA, Baumert HG, Ehrenberg M, Rigler R. Characterisation of a new, fully active fluorescent derivative of E. coli tRNA Phe. Nucleic Acids Res 1980;8:827-43.
    • (1980) Nucleic Acids Res , vol.8 , pp. 827-843
    • Plumbridge, J.A.1    Baumert, H.G.2    Ehrenberg, M.3    Rigler, R.4
  • 70
    • 0015863676 scopus 로고
    • Covalent attachment of a fluorescent group to 4-thiouridine in transfer RNA
    • Yang CH, Soll D. Covalent attachment of a fluorescent group to 4-thiouridine in transfer RNA. J Biochem 1973; 73:1243-7.
    • (1973) J Biochem , vol.73 , pp. 1243-1247
    • Yang, C.H.1    Soll, D.2
  • 71
    • 0027438034 scopus 로고
    • Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: Analysis by the application of a new sequencing technique
    • Bakin A, Ofengand J. Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: analysis by the application of a new sequencing technique. Biochemistry 1993; 32:9754-62.
    • (1993) Biochemistry , vol.32 , pp. 9754-9762
    • Bakin, A.1    Ofengand, J.2
  • 72
    • 0032245524 scopus 로고    scopus 로고
    • Mapping of pseudouridine residues in RNA to nucleotide resolution
    • Bakin AV, Ofengand J. Mapping of pseudouridine residues in RNA to nucleotide resolution. Methods Mol Biol 1998; 77:297-309.
    • (1998) Methods Mol Biol , vol.77 , pp. 297-309
    • Bakin, A.V.1    Ofengand, J.2
  • 73
    • 0016148141 scopus 로고
    • Covalent attachment of fluorescent groups to transfer ribonucleic acid. Reactions with 4-bromomethyl-7-methoxy-2-oxo-2H-benzopyran
    • Yang C, Soll D. Covalent attachment of fluorescent groups to transfer ribonucleic acid. Reactions with 4-bromomethyl-7-methoxy-2-oxo-2H-benzopyran. Biochemistry 1974; 13:3615-21.
    • (1974) Biochemistry , vol.13 , pp. 3615-3621
    • Yang, C.1    Soll, D.2
  • 74
    • 60149095579 scopus 로고    scopus 로고
    • Matrix-assisted laser desorption/ionization mass spectrometry screening for pseudouridine in mixtures of small RNAs by chemical derivatization, RNase digestion and signature products
    • Durairaj A, Limbach PA. Matrix-assisted laser desorption/ionization mass spectrometry screening for pseudouridine in mixtures of small RNAs by chemical derivatization, RNase digestion and signature products. Rapid Commun Mass Spectrom 2008; 22:3727-34.
    • (2008) Rapid Commun Mass Spectrom , vol.22 , pp. 3727-3734
    • Durairaj, A.1    Limbach, P.A.2
  • 75
    • 40849139057 scopus 로고    scopus 로고
    • Improving CMCderivatization of pseudouridine in RNA for mass spectrometric detection
    • Durairaj A, Limbach PA. Improving CMCderivatization of pseudouridine in RNA for mass spectrometric detection. Anal Chim Acta 2008; 612:173-81.
    • (2008) Anal Chim Acta , vol.612 , pp. 173-181
    • Durairaj, A.1    Limbach, P.A.2
  • 76
    • 0022423595 scopus 로고
    • Affinity electrophoresis for monitoring terminal phosphorylation and the presence of queuosine in RNA. Application of polyacrylamide containing a covalently bound boronic acid
    • Igloi GL, Kossel H. Affinity electrophoresis for monitoring terminal phosphorylation and the presence of queuosine in RNA. Application of polyacrylamide containing a covalently bound boronic acid. Nucleic Acids Res 1985; 13:6881-98.
    • (1985) Nucleic Acids Res , vol.13 , pp. 6881-6898
    • Igloi, G.L.1    Kossel, H.2
  • 77
    • 0024290398 scopus 로고
    • Interaction of tRNAs and of phosphorothioate-substituted nucleic acids with an organomercurial. Probing the chemical environment of thiolated residues by affinity electrophoresis
    • Igloi GL. Interaction of tRNAs and of phosphorothioate-substituted nucleic acids with an organomercurial. Probing the chemical environment of thiolated residues by affinity electrophoresis. Biochemistry 1988;27:3842-9.
    • (1988) Biochemistry , vol.27 , pp. 3842-3849
    • Igloi, G.L.1
  • 78
    • 57549100476 scopus 로고    scopus 로고
    • Chemical approach toward efficient DNA methylation analysis
    • Okamoto A. Chemical approach toward efficient DNA methylation analysis. Org Biomol Chem 2009;7:21-6.
    • (2009) Org Biomol Chem , vol.7 , pp. 21-26
    • Okamoto, A.1
  • 80
    • 0015239581 scopus 로고
    • Serologic specificities of methylated base immune systems
    • Levine L, Van Vunakis H, Gallo RC. Serologic specificities of methylated base immune systems. Biochemistry 1971; 10:2009-13.
    • (1971) Biochemistry , vol.10 , pp. 2009-2013
    • Levine, L.1    Van Vunakis, H.2    Gallo, R.C.3
  • 81
    • 0242550723 scopus 로고    scopus 로고
    • A Dnmt2-like protein mediates DNA methylation in Drosophila
    • DOI 10.1242/dev.00716
    • Kunert N, Marhold J, Stanke J, Stach D, Lyko F. A Dnmt2-like protein mediates DNA methylation in Drosophila. Development 2003; 130:5083-90. (Pubitemid 37369668)
    • (2003) Development , vol.130 , Issue.21 , pp. 5083-5090
    • Kunert, N.1    Marhold, J.2    Stanke, J.3    Stach, D.4    Lyko, F.5
  • 83
    • 0016592454 scopus 로고
    • Serum levels of N2, N2-dimethylguanosine and pseudouridine as determined by radioimmunoassay for patients with malignancy
    • Levine L, Waalkes TP, Stolbach L. Serum levels of N2, N2-dimethylguanosine and pseudouridine as determined by radioimmunoassay for patients with malignancy. J Natl Cancer Inst 1975; 54:341-3.
    • (1975) J Natl Cancer Inst , vol.54 , pp. 341-343
    • Levine, L.1    Waalkes, T.P.2    Stolbach, L.3
  • 84
    • 0027140266 scopus 로고
    • An immunohistochemical analysis for cancer of the esophagus using monoclonal antibodies specific for modified nucleosides
    • DOI 10.1002/1097-0142(19931215)72:12<3571::AID-CNCR2820721205>3.0. CO;2-9
    • Masuda M, Nishihira T, Itoh K, Mizugaki M, Ishida N, Mori S. An immunohistochemical analysis for cancer of the esophagus using monoclonal antibodies specific for modified nucleosides. Cancer 1993; 72:3571-8. (Pubitemid 24000589)
    • (1993) Cancer , vol.72 , Issue.12 , pp. 3571-3578
    • Masuda, M.1    Nishihira, T.2    Itoh, K.3    Mizugaki, M.4    Ishida, N.5    Mori, S.6
  • 85
    • 0033008183 scopus 로고    scopus 로고
    • Application of a recombinant Fab fragment from a phage display library for sensitive detection of a target antigen by an inhibition ELISA system
    • DOI 10.1016/S0022-1759(98)00209-9, PII S0022175998002099
    • Itoh K, Suzuki K, Ishiwata S, Tezuka T, Mizugaki M, Suzuki T. Application of a recombinant Fab fragment from a phage display library for sensitive detection of a target antigen by an inhibition ELISA system. J Immunol Methods 1999; 223:107-14. (Pubitemid 29096242)
    • (1999) Journal of Immunological Methods , vol.223 , Issue.1 , pp. 107-114
    • Itoh, K.1    Suzuki, K.2    Ishiwata, S.3    Tezuka, T.4    Mizugaki, M.5    Suzuki, T.6
  • 86
    • 0026507884 scopus 로고
    • Monitoring of urinary excretion of modified nucleosides in cancer patients using a set of six monoclonal antibodies
    • Reynaud C, Bruno C, Boullanger P, Grange J, Barbesti S, Niveleau A. Monitoring of urinary excretion of modified nucleosides in cancer patients using a set of six monoclonal antibodies. Cancer Lett 1992; 61:255-62.
    • (1992) Cancer Lett , vol.61 , pp. 255-262
    • Reynaud, C.1    Bruno, C.2    Boullanger, P.3    Grange, J.4    Barbesti, S.5    Niveleau, A.6
  • 87
    • 0027006598 scopus 로고
    • Diagnostic use of anti-modified nucleoside monoclonal antibody
    • Itoh K, Ishiwata S, Ishida N, Mizugaki M. Diagnostic use of anti-modified nucleoside monoclonal antibody. Tohoku J Exp Med 1992; 168:329-31.
    • (1992) Tohoku J Exp Med , vol.168 , pp. 329-331
    • Itoh, K.1    Ishiwata, S.2    Ishida, N.3    Mizugaki, M.4
  • 88
    • 0024278424 scopus 로고
    • Wheat germ cytoplasmic ribosomes. Localization of 7-methylguanosine and 6-methyladenosine by electron microscopy of immune complexes
    • Montesano L, Glitz DG. Wheat germ cytoplasmic ribosomes. Localization of 7-methylguanosine and 6-methyladenosine by electron microscopy of immune complexes. J Biol Chem 1988; 263:4939-44.
    • (1988) J Biol Chem , vol.263 , pp. 4939-4944
    • Montesano, L.1    Glitz, D.G.2
  • 89
    • 0017368571 scopus 로고
    • Characterization of antibodies specific for N6-methyladenosine and for 7-methylguanosine
    • Munns TW, Liszewski MK, Sims HF. Characterization of antibodies specific for N6-methyladenosine and for 7-methylguanosine. Biochemistry 1977; 16:2163-8.
    • (1977) Biochemistry , vol.16 , pp. 2163-2168
    • Munns, T.W.1    Liszewski, M.K.2    Sims, H.F.3
  • 90
    • 0021410232 scopus 로고
    • Antibodies specific for 1-methylguanosine as a probe of tRNA conformation
    • Jayabaskaran C. Antibodies specific for 1-methylguanosine as a probe of tRNA conformation. Biochem Int 1984; 8:561-71.
    • (1984) Biochem Int , vol.8 , pp. 561-571
    • Jayabaskaran, C.1
  • 91
    • 0020368550 scopus 로고
    • Ribosome structure. Localization of 7-methylguanosine in the small subunits of Escherichia coli and chloroplast ribosomes by immunoelectron microscopy
    • Trempe MR, Ohgi K, Glitz DG. Ribosome structure. Localization of 7-methylguanosine in the small subunits of Escherichia coli and chloroplast ribosomes by immunoelectron microscopy. J Biol Chem 1982;257:9822-9.
    • (1982) J Biol Chem , vol.257 , pp. 9822-9829
    • Trempe, M.R.1    Ohgi, K.2    Glitz, D.G.3
  • 92
    • 0021112234 scopus 로고
    • Investigation of immuno-adsorbent efficiency and capacity for the isolation of tRNAs containing N6-(delta2-isopentenyl)adenosine derivatives
    • McLennan BD, Raney JP. Investigation of immuno-adsorbent efficiency and capacity for the isolation of tRNAs containing N6-(delta2-isopentenyl)adenosine derivatives. J Biol Chem 1983; 258:7592-6.
    • (1983) J Biol Chem , vol.258 , pp. 7592-7596
    • McLennan, B.D.1    Raney, J.P.2
  • 93
    • 0018199226 scopus 로고
    • Antibodies to N6-(delta2-isopentenyl)adenosine and its nucleotide: Interaction with purified tRNAs and with bases, nucleosides and nucleotides of the isopentenyladenosine family
    • Milstone DS, Vold BS, Glitz DG, Shutt N. Antibodies to N6-(delta2-isopentenyl)adenosine and its nucleotide: interaction with purified tRNAs and with bases, nucleosides and nucleotides of the isopentenyladenosine family. Nucleic Acids Res 1978; 5:3439-55.
    • (1978) Nucleic Acids Res , vol.5 , pp. 3439-3455
    • Milstone, D.S.1    Vold, B.S.2    Glitz, D.G.3    Shutt, N.4
  • 94
    • 4043120552 scopus 로고    scopus 로고
    • Genome-wide searching for pseudouridylation guide snoRNAs: Analysis of the Saccharomyces cerevisiae genome
    • Schattner P, Decatur WA, Davis CA, Ares M Jr, Fournier MJ, Lowe TM. Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome. Nucleic Acids Res 2004; 32:4281-96.
    • (2004) Nucleic Acids Res , vol.32 , pp. 4281-4296
    • Schattner, P.1    Decatur, W.A.2    Davis, C.A.3    Ares Jr., M.4    Fournier, M.J.5    Lowe, T.M.6
  • 95
    • 77949607182 scopus 로고    scopus 로고
    • Fisher: A program for the detection of H/ACA snoRNAs using MFE secondary structure prediction and comparative genomics - Assessment and update
    • Freyhult E, Edvardsson S, Tamas I, Moulton V, Poole AM. Fisher: a program for the detection of H/ACA snoRNAs using MFE secondary structure prediction and comparative genomics - assessment and update. BMC Res Notes 2008; 1:49.
    • (2008) BMC Res Notes , vol.1 , pp. 49
    • Freyhult, E.1    Edvardsson, S.2    Tamas, I.3    Moulton, V.4    Poole, A.M.5
  • 96
    • 66449105849 scopus 로고    scopus 로고
    • CURE-Chloroplast: A chloroplast C-to-U RNA editing predictor for seed plants
    • Du P, Jia L, Li Y. CURE-Chloroplast: a chloroplast C-to-U RNA editing predictor for seed plants. BMC Bioinformatics 2009; 10:135.
    • (2009) BMC Bioinformatics , vol.10 , pp. 135
    • Du, P.1    Jia, L.2    Li, Y.3
  • 98
    • 12344300804 scopus 로고    scopus 로고
    • Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome
    • Athanasiadis A, Rich A, Maas S. Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome. PLoS Biol 2004; 2:391.
    • (2004) PLoS Biol , vol.2 , pp. 391
    • Athanasiadis, A.1    Rich, A.2    Maas, S.3
  • 100
    • 65449131636 scopus 로고    scopus 로고
    • Bioinformatics analysis suggests base modifications of tRNAs and miRNAs in Arabidopsis thaliana
    • Iida K, Jin H, Zhu JK. Bioinformatics analysis suggests base modifications of tRNAs and miRNAs in Arabidopsis thaliana. BMC Genomics 2009; 10:155.
    • (2009) BMC Genomics , vol.10 , pp. 155
    • Iida, K.1    Jin, H.2    Zhu, J.K.3
  • 101
    • 65849172363 scopus 로고    scopus 로고
    • Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications
    • Ebhardt HA, Tsang HH, Dai DC, Liu Y, Bostan B, Fahlman RP. Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications. Nucleic Acids Res 2009; 37:2461-70.
    • (2009) Nucleic Acids Res , vol.37 , pp. 2461-2470
    • Ebhardt, H.A.1    Tsang, H.H.2    Dai, D.C.3    Liu, Y.4    Bostan, B.5    Fahlman, R.P.6
  • 102
    • 59649120058 scopus 로고    scopus 로고
    • RNA cytosine methylation analysis by bisulfite sequencing
    • Schaefer M, Pollex T, Hanna K, Lyko F. RNA cytosine methylation analysis by bisulfite sequencing. Nucleic Acids Res 2009; 37:12.
    • (2009) Nucleic Acids Res , vol.37 , pp. 12
    • Schaefer, M.1    Pollex, T.2    Hanna, K.3    Lyko, F.4
  • 103
    • 0016754564 scopus 로고
    • Effect of sodium bisulfite modification on the arginine acceptance of E. coli tRNA Arg
    • Chakraburtty K. Effect of sodium bisulfite modification on the arginine acceptance of E. coli tRNA Arg. Nucleic Acids Res 1975; 2:1793-804.
    • (1975) Nucleic Acids Res , vol.2 , pp. 1793-1804
    • Chakraburtty, K.1
  • 104
    • 0020001162 scopus 로고
    • The effect of bisulfite-induced C to U transitions on aminoacylation of Escherichia coli glycine tRNA
    • Sabban EL, Bhanot OS. The effect of bisulfite-induced C to U transitions on aminoacylation of Escherichia coli glycine tRNA. J Biol Chem 1982; 257:4796-805.
    • (1982) J Biol Chem , vol.257 , pp. 4796-4805
    • Sabban, E.L.1    Bhanot, O.S.2
  • 105
    • 24344499742 scopus 로고    scopus 로고
    • Depletion of Saccharomyces cerevisiae tRNA(His) guanylyltransferase Thg1p leads to uncharged tRNAHis with additional m(5)C
    • Gu W, Hurto RL, Hopper AK, Grayhack EJ, Phizicky EM. Depletion of Saccharomyces cerevisiae tRNA(His) guanylyltransferase Thg1p leads to uncharged tRNAHis with additional m(5)C. Mol Cell Biol 2005;25:8191-201.
    • (2005) Mol Cell Biol , vol.25 , pp. 8191-8201
    • Gu, W.1    Hurto, R.L.2    Hopper, A.K.3    Grayhack, E.J.4    Phizicky, E.M.5
  • 106
    • 0016031271 scopus 로고
    • Effects of dilute HCl on yeast tRNAPhe and E. coli tRNA1fMet
    • Ladner JE, Schweizer MP. Effects of dilute HCl on yeast tRNAPhe and E. coli tRNA1fMet. Nucleic Acids Res 1974; 1:183-92.
    • (1974) Nucleic Acids Res , vol.1 , pp. 183-192
    • Ladner, J.E.1    Schweizer, M.P.2
  • 107
    • 0017822261 scopus 로고
    • Replacement of wybutine by hydrazines and its effect on the active conformation of yeast tRNAPhe
    • Schleich HG, Wintermeyer W, Zachau HG. Replacement of wybutine by hydrazines and its effect on the active conformation of yeast tRNAPhe. Nucleic Acids Res 1978; 5:1701-13.
    • (1978) Nucleic Acids Res , vol.5 , pp. 1701-1713
    • Schleich, H.G.1    Wintermeyer, W.2    Zachau, H.G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.