A novel and highly specific phage endolysin cell wall binding domain for detection of Bacillus cereus

European Biophysics Journal

Volumn 44, Issue 6, 2015, Pages 437-446

  Kong, Minsuk ^a   Sim, Jieun ^b,c   Kang, Taejoon ^b,c   Nguyen, Hoang Hiep ^b,c   Park, Hyun Kyu ^d   Chung, Bong Hyun ^b,c   Ryu, Sangryeol ^a  

^a Seoul National University   (South Korea)

^b Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

^c University of Science and Technology (UST)   (South Korea)

^d MicoBioMed Ltd   (South Korea)

Author keywords

Bacillus cereus; Bacteriophage endolysin; Biosensor; Cell wall binding domain; Surface plasmon resonance

Indexed keywords

ENDOLYSIN; HYDROLASE; UNCLASSIFIED DRUG; VIRUS ENZYME; PROTEIN BINDING; PROTEINASE;

ARTICLE; BACILLUS CEREUS; BACILLUS PHAGE; BACTERIAL CELL WALL; BACTERIOPHAGE PBC1; BACTERIUM DETECTION; BINDING AFFINITY; BIOCHIP; CELL SURFACE; CELL WALL BINDING DOMAIN; COLONY FORMING UNIT; COMPUTER MODEL; CONTROLLED STUDY; LIMIT OF DETECTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DOMAIN; SENSITIVITY AND SPECIFICITY; SURFACE PLASMON RESONANCE; AMINO ACID SEQUENCE; BACTERIOPHAGE; BINDING SITE; CELL WALL; CHEMISTRY; ENZYMOLOGY; GENETIC PROCEDURES; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR GENETICS; PROCEDURES; VIROLOGY;

BACILLUS CEREUS;

AMINO ACID SEQUENCE; BACILLUS CEREUS; BACTERIOPHAGES; BINDING SITES; BIOSENSING TECHNIQUES; CELL WALL; ENDOPEPTIDASES; MOLECULAR SEQUENCE DATA; PROTEIN BINDING;

EID: 84938970534     PISSN: 01757571     EISSN: 14321017     Source Type: Journal    
DOI: 10.1007/s00249-015-1044-7     Document Type: Article

References (65)

1. Abadian PN, Kelley CP, Goluch ED (2014) Cellular analysis and detection using surface plasmon resonance techniques. Anal Chem 86:2799–2812
2. Abdel-Hamid I, Ivnitski D, Atanasov P, Wilkins E (1999) Flow-through immunofiltration assay system for rapid detection of E. coli O157:H7. Biosens Bioelectron 14:309–316
3. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410
4. Arora P, Sindhu A, Dilbaghi N, Chaudhury A (2011) Biosensors as innovative tools for the detection of food borne pathogens. Biosens Bioelectron 28:1–12
5. Arya SK, Singh A, Naidoo R, Wu P, McDermott MT, Evoy S (2011) Chemically immobilized T4-bacteriophage for specific Escherichia coli detection using surface plasmon resonance. Analyst 136:486–492
6. Baeumner AJ, Cohen RN, Miksic V, Min J (2003) RNA biosensor for the rapid detection of viable Escherichia coli in drinking water. Biosens Bioelectron 18:405–413
7. Bej AK, Mahbubani MH, Dicesare JL, Atlas RM (1991) Polymerase chain reaction-gene probe detection of microorganisms by using filter-concentrated samples. Appl Environ Microbiol 57:3529–3534
8. Bottone EJ (2010) Bacillus cereus, a volatile human pathogen. Clin Microbiol Rev 23:382–398
9. Brewster JD, Gehring AG, Mazenko RS, Houten LJV, Crawford CJ (1996) Immunoelectrochemical assays for bacteria: use of epifluorescence microscopy and rapid-scan electrochemical techniques in development of an assay for Salmonella. Anal Chem 68:4153–4159
10. Brzozowska E, Smietana M, Koba M, Gorska S, Pawlik K, Gamian A, Bock WJ (2015) Recognition of bacterial lipopolysaccharide using bacteriophage-adhesin-coated long-period gratings. Biosens Bioelectron 67:93–99
11. Caliendo AM (2011) Multiplex PCR and emerging technologies for the detection of respiratory pathogens. Clin Infect Dis 52(Suppl 4):S326–S330
12. Callewaert L, Walmagh M, Michiels CW, Lavigne R (2011) Food applications of bacterial cell wall hydrolases. Curr Opin Biotech 22:164–171
13. Chen LH, Wang Q, Hou WG (2009) The utilization of BSA-modified chip on the investigation of ligand/protein interaction with surface plasma resonance. Afr J Biotechnol 8:7148–7155
14. Chibli H, Ghali H, Park S, Peter YA, Nadeau JL (2014) Immobilized phage proteins for specific detection of staphylococci. Analyst 139:179–186
15. Croci L, Delibato E, Volpe G, Palleschi G (2001) A rapid electrochemical ELISA for the detection of Salmonella in meat samples. Anal Lett 34:597–2607
16. Fischetti VA (2010) Bacteriophage endolysins: a novel anti-infective to control Gram-positive pathogens. Int J Med Microbiol 300:57–362
17. Gould LH, Walsh KA, Vieira AR, Herman K, Williams IT, Hall AJ, Cole D (2013) Surveillance for foodborne disease outbreaks—United States, 1998–2008. MMWR Surveill Summ 62:1–34
18. Javed MA, Poshtiban S, Arutyunov D, Evoy S, Szymanski CM (2013) Bacteriophage receptor binding protein based assays for the simultaneous detection of Campylobacter jejuni and Campylobacter coli. PLoS One 8:e69770. doi:10.1371/journal.pone.0069770
19. Kang XB, Pang GC, Chen QS, Liang XY (2013) Fabrication of Bacillus cereus electrochemical immunosensor based on double-layer gold nanoparticles and chitosan. Sens Actuat B-Chem 177:1010–1016
20. Kelley LA, Sternberg MJ (2009) Protein structure prediction on the Web: a case study using the Phyre server. Nat Protoc 4:63–371
21. Kong M, Kim M, Ryu S (2012) Complete genome sequence of Bacillus cereus bacteriophage PBC1. J Virol 86:6379–6380
22. Kretzer JW, Lehmann R, Schmelcher M, Banz M, Kim KP, Korn C, Loessner MJ (2007) Use of high-affinity cell wall-binding domains of bacteriophage endolysins for immobilization and separation of bacterial cells. Appl Environ Microb 73:992–2000
23. Lambert C, Leonard N, De Bolle X, Depiereux E (2002) ESyPred3D: prediction of proteins 3D structures. Bioinformatics 18:1250–1256
24. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23:2947–2948
25. Lazcka O, Del Campo FJ, Munoz FX (2007) Pathogen detection: a perspective of traditional methods and biosensors. Biosens Bioelectron 22:1205–1217
26. Lee JM, Park HK, Jung Y, Kim JK, Jung SO, Chung BH (2007) Direct immobilization of protein G variants with various numbers of cysteine residues on a gold surface. Anal Chem 79:2680–2687
27. Leonard P, Hearty S, Quinn J, O’Kennedy R (2004) A generic approach for the detection of whole Listeria monocytogenes cells in contaminated samples using surface plasmon resonance. Biosens Bioelectron 19:1331–1335
28. Leoni E, Legnani PP (2001) Comparison of selective procedures for isolation and enumeration of Legionella species from hot water systems. J Appl Microbiol 90:27–33
29. Loessner MJ (2005) Bacteriophage endolysins—current state of research and applications. Curr Opin Microbiol 8:480–487
30. Loessner MJ, Maier SK, Daubek-Puza H, Wendlinger G, Scherer S (1997) Three Bacillus cereus bacteriophage endolysins are unrelated but reveal high homology to cell wall hydrolases from different bacilli. J Bacteriol 179:2845–2851
31. Loessner MJ, Kramer K, Ebel F, Scherer S (2002) C-terminal domains of Listeria monocytogenes bacteriophage murein hydrolases determine specific recognition and high-affinity binding to bacterial cell wall carbohydrates. Mol Microbiol 44:335–349
32. Mahony J, McAuliffe O, Ross RP, van Sinderen D (2011) Bacteriophages as biocontrol agents of food pathogens. Curr Opin Biotech 22:157–163
33. Marchler-Bauer A, Anderson JB, Derbyshire MK, DeWeese-Scott C, Gonzales NR, Gwadz M, Hao L, He S, Hurwitz DI, Jackson JD, Ke Z, Krylov D, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Thanki N, Yamashita RA, Yin JJ, Zhang D, Bryant SH (2007) CDD: a conserved domain database for interactive domain family analysis. Nucl Acids Res 35:D237–D240
34. Mothershed EA, Whitney AM (2006) Nucleic acid-based methods for the detection of bacterial pathogens: present and future considerations for the clinical laboratory. Clin Chim Acta 363:206–220
35. Olsen JE (2000) DNA-based methods for detection of food-borne bacterial pathogens. Food Res Int 33:257–266
36. Pal S, Alocilja EC, Downes FP (2007) Nanowire labeled direct-charge transfer biosensor for detecting Bacillus species. Biosens Bioelectron 22:2329–2336
37. Pan Y, Long MJC, Li XM, Shi Jf, Hedstrom L, Xu B (2011) Glutathione (GSH)-decorated magnetic nanoparticles for binding glutathione-S-transferase (GST) fusion protein and manipulating live cells. Chem Sci 2:945–948
38. Petrenko VA, Vodyanoy VJ (2003) Phage display for detection of biological threat agents. J Microbiol Meth 53:253–262
39. Poshtiban S, Javed MA, Arutyunov D, Singh A, Banting G, Szymanski CM, Evoy S (2013) Phage receptor binding protein-based magnetic enrichment method as an aid for real time PCR detection of foodborne bacteria. Analyst 138:5619–5626
40. Radke SM, Alocilja EC (2005) A high density microelectrode array biosensor for detection of E. coli O157:H7. Biosens Bioelectron 20:1662–1667
41. Rangan C (2008) Bacillus cereus. In: Barceloux DG (ed) Medical toxicology of natural substances: foods, fungi, medicinal herbs, plants, and venomous animals. Wiley, New Jersey, pp 89–95
42. Scallan E, Hoekstra RM, Angulo FJ, Tauxe RV, Widdowson MA, Roy SL, Jones JL, Griffin PM (2011) Foodborne illness acquired in the United States—major pathogens. Emerg Infect Dis 17:7–15
43. Schmelcher M, Shabarova T, Eugster MR, Eichenseher F, Tchang VS, Banz M, Loessner MJ (2010) Rapid multiplex detection and differentiation of Listeria cells by use of fluorescent phage endolysin cell wall binding domains. Appl Environ Microb 76:5745–5756
44. Schmelcher M, Tchang VS, Loessner MJ (2011) Domain shuffling and module engineering of Listeria phage endolysins for enhanced lytic activity and binding affinity. Microb Biotechnol 4:651–662
45. Sheffield P, Garrard S, Derewenda Z (1999) Overcoming expression and purification problems of RhoGDI using a family of “parallel” expression vectors. Protein Expr Purif 15:34–39
46. Singh A, Arya SK, Glass N, Hanifi-Moghaddam P, Naidoo R, Szymanski CM, Tanha J, Evoy S (2010) Bacteriophage tailspike proteins as molecular probes for sensitive and selective bacterial detection. Biosens Bioelectron 26:131–138
47. Singh A, Arutyunov D, McDermott MT, Szymanski CM, Evoy S (2011) Specific detection of Campylobacter jejuni using the bacteriophage NCTC 12673 receptor binding protein as a probe. Analyst 136:4780–4786
48. Singh A, Arutyunov D, Szymanski CM, Evoy S (2012) Bacteriophage based probes for pathogen detection. Analyst 137:3405–3421
49. Skottrup PD, Nicolaisen M, Justesen AF (2008) Towards on-site pathogen detection using antibody-based sensors. Biosens Bioelectron 24:339–348
50. ® technology for rapid detection of Listeriamonocytogenes and other Listeria spp. Int J Food Microbiol 89:287–290
51. Taitt CR, Golden JP, Shubin YS, Shriver-Lake LC, Sapsford KE, Rasooly A, Ligler FS (2004) A portable array biosensor for detecting multiple analytes in complex samples. Microb Ecol 47:175–185
52. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739
53. Tawil N, Sacher E, Mandeville R, Meunier M (2014) Bacteriophages: biosensing tools for multi-drug resistant pathogens. Analyst 139:1224–1236
54. Terpe K (2003) Overview of tag protein fusions: from molecular and biochemical fundamentals to commercial systems. Appl Microbiol Biotechnol 60:523–533
55. Tessema M, Simons PC, Cimino DF, Sanchez L, Waller A, Posner RG, Wandinger-Ness A, Prossnitz ER, Sklar LA (2006) Glutathione-S-transferase-green fluorescent protein fusion protein reveals slow dissociation from high site densiy beads and measures free GSH. Cytom Part A 69A:326–334
56. Tims TB, Lim DV (2004) Rapid detection of Bacillus anthracis spores directly from powders with an evanescent wave fiber-optic biosensor. J Microbiol Meth 59:127–130
57. Tolba M, Ahmed MU, Tlili C, Eichenseher F, Loessner MJ, Zourob M (2012) A bacteriophage endolysin-based electrochemical impedance biosensor for the rapid detection of Listeria cells. Analyst 137:5749–5756
58. Turkova J (1999) Oriented immobilization of biologically active proteins as a tool for revealing protein interactions and function. J Chromatogr B 722:11–31
59. Vaughan RD, O’Sullivan CK, Guilbault GG (2001) Development of a quartz crystal microbalance (QCM) immunosensor for the detection of Listeria monocytogenes. Enzym Microb Tech 29:635–638
60. Vaughan RD, Carter RM, O’Sullivan CK, Guilbault GG (2003) A quartz crystal microbalance (QCM) sensor for the detection of Bacillus cereus. Anal Lett 36:731–747
61. Velusamy V, Arshak K, Korostynska O, Oliwa K, Adley C (2010) An overview of foodborne pathogen detection: in the perspective of biosensors. Biotechnol Adv 28:232–254
62. Wang W, Singh S, Zeng DL, King K, Nema S (2007) Antibody structure, instability, and formulation. J Pharm Sci-Us 96:1–26
63. Wong YY, Ng SP, Ng MH, Si SH, Yao SZ, Fung YS (2002) Immunosensor for the differentiation and detection of Salmonella species based on a quartz crystal microbalance. Biosens Bioelectron 17:676–684
64. Zdobnov EM, Apweiler R (2001) InterProScan—an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17:847–848
65. Zhou P, Wagner G (2010) Overcoming the solubility limit with solubility-enhancement tags: successful applications in biomolecular NMR studies. J Biomol NMR 46:23–31