Phage display for detection of biological threat agents

Journal of Microbiological Methods

Volumn 53, Issue 2, 2003, Pages 253-262

  Petrenko, Valery A ^a   Vodyanoy, Vitaly J ^a  

^a AUBURN UNIVERSITY   (United States)

Author keywords

Detection; Landscape library; Microbalance; Phage antibodies; Phage display; Threat agents

Indexed keywords

ANTIBODY; BACTERIAL DNA; BETA GALACTOSIDASE; COAT PROTEIN; PEPTIDE;

AFFINITY CHROMATOGRAPHY; ANTIGEN BINDING; BINDING AFFINITY; BIOSENSOR; ESCHERICHIA COLI; MOLECULAR PROBE; MOLECULAR RECOGNITION; NONHUMAN; PHAGE DISPLAY; PRIORITY JOURNAL; REVIEW; SEPARATION TECHNIQUE;

ANIMALIA; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 0037401049     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0167-7012(03)00029-0     Document Type: Review

References (74)

1. Arnon S.S., Schechter R., Inglesby T.V., Henderson D.A., Bartlett J.G., Ascher M.S., Eitzen E., Fine A.D., Hauer J., Layton M.et al. Botulinum toxin as a biological weapon: medical and public health management. JAMA. 285:2001;1059-1070.
2. Barbas C.F. III, Kang A.S., Lerner R.A., Benkovic S.J. Assembly of combinatorial antibody libraries on phage surfaces: the gene III site. Proceedings of the National Academy of Sciences of the United States of America. 88:1991;7978-7982.
3. Bianchi E., Folgori A., Wallace A., Nicotra M., Acali S., Phalipon A., Barbato G., Bazzo R., Cortese R., Felici F.et al. A conformationally homogeneous combinatorial peptide library. Journal of Molecular Biology. 247:1995;154-160.
4. Bunde R.L., Jarvi E.J., Jeffrey J., Rosentreter J.J. Piezoelectric quartz crystal biosensors. Talanta. 46:1998;1223-1236.
5. Cavicacute B.A., Hayward G.L., Thompson M. Acoustic waves and the study of biochemical macromolecules and cells at the sensor-liquid interface. Analyst. 124:1999;1405-1420.
6. Chan S.W., Bye J.M., Jackson P., Allain J.P. Human recombinant antibodies specific for hepatitis C virus core and envelope E2 peptides from an immune phage display library. Journal of General Virology. 77:1996;2531-2539.
7. Connors K.A. Binding Constants. The Measurements of Molecular Complex Stability. 1987;Wiley, New York.
8. Dennis M.S., Herzka A., Lazarus R.A. Potent and selective Kunitz domain inhibitors of plasma kallikrein designed by phage display. Journal of Biological Chemistry. 270:1995;25411-25417.
9. Djavadi-Ohananiance L., Goldberg M.E., Friguet B. Measuring antibody affinity in solution. McCafferty J., Hoogenboom H.R., Chiswell D.J. Antibody Engineering. 1996;77-97 Oxford Univ. Press, New York.
10. Dooley H., Grant S.D., Harris W.J., Porter A.J., Shelton S.A., Graham B.M., Strachan G. Stabilization of antibody fragments in adverse environment. Biotechnology and Applied Biochemistry. 28:1998;77-83.
11. Emanuel P., Obrien T., Burans J., Dasgupta B.R., Valdes J.J., Eldefrawi M. Directing antigen specificity towards botulinum neurotoxin with combinatorial phage display libraries. Journal of Immunological Methods. 193:1996;189-197.
12. Emanuel P.A., Dang J., Gebhardt J.S., Aldrich J., Garber E.A., Kulaga H., Stopa P., Valdes J.J., Dion-Schultz A. Recombinant antibodies: a new reagent for biological agent detection. Biosensors and Bioelectronics. 14:2000;751-759.
13. Felici F., Castagnoli L., Musacchio A., Jappelli R., Cesareni G. Selection of antibody ligands from a large library of oligopeptides expressed on a multivalent exposition vector. Journal of Molecular Biology. 222:1991;301-310.
14. Goldman E.R., Pazirandeh M.P., Mauro J.M., King K.D., Frey J.C., Anderson G.P. Phage-displayed peptides as biosensor reagents. Journal of Molecular Recognition. 13:2000;382-387. (Nov.-Dec.).
15. Gough K.C., Cockburn W., Whitelam G.C. Selection of phage-display peptides that bind to cucumber mosaic virus coat protein. Journal of Virological Methods. 79:1999;169-180.
16. Greenwood J., Willis A.E., Perham R.N. Multiple display of foreign peptides on a filamentous bacteriophage. Peptides from Plasmodium falciparum circumsporozoite protein as antigens. Journal of Molecular Biology. 220:1991;821-827.
17. Hayhurst A., Georgiou G. High-throughput antibody isolation. (Review) Current Opinion in Chemical Biology. 5:2001;683-689.
18. Henderson D.A., Inglesby T.V., Bartlett J.G., Ascher M.S., Eitzen E., Jahrling P.B., Hauer J., Layton M., McDade J., Osterholm M.T.et al. Smallpox as a biological weapon: medical and public health management. Working Group on Civilian Biodefense. JAMA. 281:1999;2127-2137.
19. Higgins J.A., Ibrahim M.S., Knauert F.K., Ludwig G.V., Kijek T.M., Ezzell J.W., Courtney B.C., Henchal E.A. Sensitive and rapid identification of biological threat agents. Annals of the New York Academy of Sciences. 894:1999;130-148.
20. Hoess R.H. Protein design and phage display. (Review) Chemical Reviews. 101:2001;3205-3218.
21. Holliger P., Riechmann L., Williams R.L. Crystal structure of the two N-terminal domains of g3p from filamentous phage fd at 1.9 A: evidence for conformational lability. Journal of Molecular Biology. 288:1999;649-657.
22. Holt L.J., Enever C., de Wildt R.M., Tomlinson I.M. The use of recombinant antibodies in proteomics. Current Opinion in Biotechnology. 11:2000;445-449.
23. Ilyichev A.A., Minenkova O.O., Tatkov S.I., Karpyshev N.N., Eroshkin A.M., Petrenko V.A., Sandakhchiev L.S. Construction of M13 viable bacteriophage with the insert of foreign peptides into the major coat protein. Doklady Biochemistry (Proceedings of the Academy of Sciences of the USSR)-English Translation. 307:1989;196-198.
24. Inglesby T.V., Henderson D.A., Bartlett J.G., Ascher M.S., Eitzen E., Friedlander A.M., Hauer J., McDade J., Osterholm M.T., O'Toole T.et al. Anthrax as a biological weapon: medical and public health management. Working Group on Civilian Biodefense. JAMA. 281:1999;1735-1745.
25. Inglesby T.V., Dennis D.T., Henderson D.A., Bartlett J.G., Ascher M.S., Eitzen E., Fine A.D., Friedlander A.M., Hauer J., Koerner J.F.et al. Plague as a biological weapon: medical and public health management. Working Group on Civilian Biodefense. JAMA. 283:2000;2281-2290.
26. Iqbal S.S., Mayo M.W., Bruno J.G., Bronk B.V., Batt C.A., Chambers J.P. A review of molecular recognition technologies for detection of biological threat agents. (Review) Biosensors and Bioelectronics. 15:2000;549-578.
27. Ivnitski D., Abdel-Hamid I., Atanasov P., Wilkins E. Biosensors for detection of pathogenic bacteria. (Review) Biosensors and Bioelectronics. 14:1999;599-624.
28. Kaspar M., Stadler H., Weiss T., Ziegler C. Thickness shear mode resonators ("mass-sensitive devices") in bioanalysis. Fresenius' Journal of Analytical Chemistry. 366:2000;602-610.
29. King K.D., Vanniere J.M., Leblanc J.L., Bullock K.E., Anderson G.P. Automated fiber optic biosensor for multiplexed immunoassays. Environmental Science and Technology. 34(13):2000;2845-2850. (July 1).
30. Kishchenko G.P., Minenkova O.O., Ilyichev A.A., Gruzdev A.D., Petrenko V.A. Study of the structure of phage-M13 virions containing chimeric B-protein molecules. Molecular Biology-English Translation. 25:1991;1171-1176.
31. Kishchenko G., Batliwala H., Makowski L. Structure of a foreign peptide displayed on the surface of bacteriophage-M13. Journal of Molecular Biology. 241:1994;208-213.
32. Koide A., Bailey C.W., Huang X., Koide S. The fibronectin type III domain as a scaffold for novel binding proteins. Journal of Molecular Biology. 284:1998;1141-1151.
33. Ku J., Schultz P.G. Alternate protein frameworks for molecular recognition. Proceedings of the National Academy of Sciences of the United States of America. 92:1995;6552-6556.
34. Kuchel P.W., Ralston G.B. Theory and Problems of Biochemistry. 1988;McGraw-Hill, New York.
35. Liu B., Marks J.D. Applying phage antibodies to proteomics: selecting single chain Fv antibodies to antigens blotted on nitrocellulose. Analytical Biochemistry. 286:2000;119-128.
36. Luppa P.B., Sokoll L.J., Chan D.W. Immunosensors - principles and applications to clinical chemistry. (Review) Clinica Chimica Acta. 314:2001;1-26.
37. Makowski L. Structural constraints on the display of foreign peptides on filamentous bacteriophages. Gene. 128:1993;5-11.
38. Mammen M., Choi S.K., Whitesides G.M. Polyvalent interactions in biological systems - implications for design and use of multivalent ligands and inhibitors. (Review) Angewandte Chemie, International Edition in English. 37:1998;2755-2794.
39. Martin F., Toniatti C., Salvati A.L., Ciliberto G., Cortese R., Sollazzo M. Coupling protein design and in vitro selection strategies - improving specificity and affinity of a designed beta-protein Il-6 antagonist. Journal of Molecular Biology. 255:1996;86-97.
40. Maruyama T., Rodriguez L.L., Jahrling P.B., Sanchez A., Khan A.S., Nichol S.T., Peters C.J., Parren P.W., Burton D.R. Ebola virus can be effectively neutralized by antibody produced in natural human infection. Journal of Virology. 73:1999;6024-6030.
41. McCafferty J., Griffiths A.D., Winter G., Chiswell D.J. Phage antibodies: filamentous phage displaying antibody variable domains. Nature. 348:1990;552-554.
42. McConnell S.J., Hoess R.H. Tendamistat as a scaffold for conformationally constrained phage peptide libraries. Journal of Molecular Biology. 250:1995;460-470.
43. Morino K., Katsumi H., Akahori Y., Iba Y., Shinohara M., Ukai Y., Kohara Y., Kurosawa Y. Antibody fusions with fluorescent proteins: a versatile reagent for profiling protein expression. Journal of Immunological Methods. 257:2001;175-184.
44. Muller B.H., Lafay F., Demangel C., Perrin P., Tordo N., Flamand A., Lafaye P., Guesdon J.L. Phage-displayed and soluble mouse scFv fragments neutralize rabies virus. Journal of Virological Methods. 67:1997;221-233.
45. Muller B.H., Chevrier D., Boulain J.C., Guesdon J.L. Recombinant single-chain Fv antibody fragment-alkaline phosphatase conjugate for one-step immunodetection in molecular hybridization. Journal of Immunological Methods. 227:1999;177-185.
46. Nord K., Nord O., Uhlen M., Kelley B., Ljungqvist C., Nygren P.A. Recombinant human factor VIII-specific affinity ligands selected from phage-displayed combinatorial libraries of protein A. European Journal of Biochemistry. 268:2001;4269-4277.
47. Olofsson L., Ankarloo J., Andersson P.O., Nicholls I.A. Filamentous bacteriophage stability in non-aqueous media. Chemistry and Biology. 8:2001;661-671.
48. O'Sullivan C.K., Guilbault G.G. Commercial quartz crystal microbalances - theory and applications. Biosensors and Bioelectronics. 14:1999;663-670.
49. Pathirana S.T., Barbaree J., Chin B.A., Hartell M.G., Neely W.C., Vodyanoy V. Rapid and sensitive biosensor for Salmonella. Biosensors and Bioelectronics. 15:2000;135-141.
50. Petrenko V.A., Smith G.P. Phages from landscape libraries as substitute antibodies. Protein Engineering. 13:2000;589-592.
51. Petrenko V.A., Smith G.P., Gong X., Quinn T. A library of organic landscapes on filamentous phage. Protein Engineering. 9:1996;797-801.
52. Plaisant P., Burioni R., Manzin A., Solforosi L., Candela M., Gabrielli A., Fadda G., Clementi M. Human monoclonal recombinant Fabs specific for HCV antigens obtained by repertoire cloning in phage display combinatorial vectors. Research in Virology. 148:1997;165-169.
53. Poli M.A., Rivera V.R., Neal D. Development of sensitive colorimetric capture elisas for Clostridium botulinum neurotoxin serotypes E and F. Toxicon. 0:2002;000.
54. Rader C., Barbas C.F. Phage display of combinatorial antibody libraries. Current Opinion in Biotechnology. 8:1997;503-508.
55. Romanov V.I., Durand D.B., Petrenko V.A. Phage display selection of peptides that affect prostate carcinoma cells attachment and invasion. Prostate. 47:2001;239-251.
56. Rowe-Taitt C.A., Hazzard J.W., Hoffman K.E., Cras J.J., Golden J.P., Ligler F.S. Simultaneous detection of six biohazardous agents using a planar waveguide array biosensor. Biosensors and Bioelectronics. 15:2000;579-589.
57. Samoylov A.M., Samoylova T.I., Pathirana S.T., Globa L.P., Vodyanoy V.J. Peptide biosensor for recognition of cross-species cell surface markers. Journal of Molecular Recognition. 15:2002;1-7.
58. Sanna P.P., Williamson R.A., De Logu A., Bloom F.E., Burton D.R. Directed selection of recombinant human monoclonal antibodies to herpes simplex virus glycoproteins from phage display libraries. Proceedings of the National Academy of Sciences of the United States of America. 92:1995;6439-6443.
59. Scatchard G., Coleman J.S., Shen A.L. Physical chemistry of protein solutions: VII. The binding of some small anions to serum albumin. Journal of the American Chemical Society. 79:1949;12-20.
60. Schmaljohn C., Cui Y., Kerby S., Pennock D., Spik K. Production and characterization of human monoclonal antibody Fab fragments to vaccinia virus from a phage-display combinatorial library. Virology. 258:1999;189-200.
61. Scott J.K., Smith G.P. Searching for peptide ligands with an epitope library. Science. 249:1990;386-390.
62. Shone C., Wilton-Smith P., Appleton N., Hambleton P., Modi N., Gatley S., Melling J. Monoclonal antibody-based immunoassay for type A Clostridium botulinum toxin is comparable to the mouse bioassay. Applied and Environmental Microbiology. 50:1985;63-67.
63. Skerra A. Lipocalins as a scaffold. Biochimica et Biophysica Acta. 1482:2000;337-350.
64. Smith G.P. Filamentous fusion phage: novel expression vectors that display cloned antigens on the virion surface. Science. 228:1985;1315-1317.
65. Smith G.P., Petrenko V.A. Phage display. (Review) Chemical Reviews. 97:1997;391-410.
66. Sollazzo M., Venturini S., Lorenzetti S., Pinola M., Martin F. Engineering minibody-like ligands by design and selection. Chemical Immunology. 65:1997;1-17.
67. Strachan G., Whyte J.A., Molloy P.M., Paton G.I., Porter A.J.R. Development of robust, environmental, immunoassay formats for the quantification of pesticides in soil. Environmental Science and Technology. 34:2000;1603-1608.
68. Szilagyi M., Rivera V.R., Neal D., Merrill G.A., Poli M.A. Development of sensitive colorimetric capture elisas for Clostridium botulinum neurotoxin serotypes A and B. Toxicon. 38:2000;381-389.
69. Vaughan T.J., Williams A.J., Pritchard K., Osbourn J.K., Pope A.R., Earnshaw J.C., McCafferty J., Hodits R.A., Wilton J., Johnson K.S. Human antibodies with sub-nanomolar affinities isolated from a large non-immunized phage display library. Nature Biotechnology. 14:1996;309-314.
70. Webster R. Filamentous phage biology. Barbas C.F.et al. Phage Display. A Laboratory Manual. 2001;1.1-1.37 Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
71. Williamson R.A., Lazzarotto T., Sanna P.P., Bastidas R.B., Dalla Casa B., Campisi G., Burioni R., Landini M.P., Burton D.R. Use of recombinant human antibody fragments for detection of cytomegalovirus antigenemia. Journal of Clinical Microbiology. 35:1997;247-2050.
72. Zdanovsky A.G., Karassina N.V., Simpson D., Zdanovskaia M.V. Peptide phage display library as source for inhibitors of clostridial neurotoxins. Journal of Protein Chemistry. 20:2001;73-80.
73. Zhou B., Wirsching P., Janda K.D. Human antibodies against spores of the genus Bacillus: a model study for detection of and protection against anthrax and the bioterrorist threat. Proceedings of the National Academy of Sciences of the United States of America. 99:2002;5241-5246.
74. Ziegler C., Gopel W., Hammerle H., Hatt H., Jung G., Laxhuber L., Schmidt H.L., Schutz S., Vogtle F., Zell A. Bioelectronic noses - a status report - Part II. (Review) Biosensors and Bioelectronics. 13:1998;539-571.