-
1
-
-
77955042462
-
From complete genome sequence to "complete" understanding?
-
Galperin, M. Y., and Koonin, E. V. (2010) From complete genome sequence to "complete" understanding? Trends Biotechnol. 28, 398-406
-
(2010)
Trends Biotechnol.
, vol.28
, pp. 398-406
-
-
Galperin, M.Y.1
Koonin, E.V.2
-
2
-
-
6044244615
-
"Conserved hypothetical" proteins: Prioritization of targets for experimental study
-
Galperin, M. Y., and Koonin, E. V. (2004) "Conserved hypothetical" proteins: prioritization of targets for experimental study. Nucleic Acids Res. 32, 5452-5463
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 5452-5463
-
-
Galperin, M.Y.1
Koonin, E.V.2
-
3
-
-
0037398732
-
Missing genes in metabolic pathways: A comparative genomics approach
-
Osterman, A., and Overbeek, R. (2003) Missing genes in metabolic pathways: a comparative genomics approach. Curr. Opin. Chem. Biol. 7, 238-251
-
(2003)
Curr. Opin. Chem. Biol.
, vol.7
, pp. 238-251
-
-
Osterman, A.1
Overbeek, R.2
-
4
-
-
72449145463
-
"Unknown" proteins and "orphan" enzymes: The missing half of the engineering parts list and how to find it
-
Hanson, A. D., Pribat, A., Waller, J. C., and de Crécy-Lagard, V. (2010) "Unknown" proteins and "orphan" enzymes: the missing half of the engineering parts list and how to find it. Biochem. J. 425, 1-11
-
(2010)
Biochem. J.
, vol.425
, pp. 1-11
-
-
Hanson, A.D.1
Pribat, A.2
Waller, J.C.3
De Crécy-Lagard, V.4
-
5
-
-
34548246519
-
Protein annotation at genomic scale: The current status
-
Frishman, D. (2007) Protein annotation at genomic scale: the current status. Chem. Rev. 107, 3448-3466
-
(2007)
Chem. Rev.
, vol.107
, pp. 3448-3466
-
-
Frishman, D.1
-
6
-
-
79952705856
-
Mining high-throughput experimental data to link gene and function
-
Blaby-Haas, C. E., and de Crécy-Lagard, V. (2011) Mining high-throughput experimental data to link gene and function. Trends Biotechnol. 29, 174-182
-
(2011)
Trends Biotechnol.
, vol.29
, pp. 174-182
-
-
Blaby-Haas, C.E.1
De Crécy-Lagard, V.2
-
7
-
-
74549221383
-
Annotation error in public databases: Misannotation of molecular function in enzyme superfamilies
-
Schnoes, A. M., Brown, S. D., Dodevski, I., and Babbitt, P. C. (2009) Annotation error in public databases: misannotation of molecular function in enzyme superfamilies. PLoS Comput. Biol. 5, e1000605
-
(2009)
PLoS Comput. Biol.
, vol.5
-
-
Schnoes, A.M.1
Brown, S.D.2
Dodevski, I.3
Babbitt, P.C.4
-
8
-
-
0033119399
-
Errors in genome annotation
-
Brenner, S. E. (1999) Errors in genome annotation. Trends Genet. 15, 132-133
-
(1999)
Trends Genet.
, vol.15
, pp. 132-133
-
-
Brenner, S.E.1
-
9
-
-
19244366327
-
Call for an enzyme genomics initiative
-
Karp, P. D. (2004) Call for an enzyme genomics initiative. Genome Biol. 5, 401
-
(2004)
Genome Biol.
, vol.5
, pp. 401
-
-
Karp, P.D.1
-
10
-
-
84903906147
-
Profiling the orphan enzymes
-
Sorokina, M., Stam, M., Médigue, C., Lespinet, O., and Vallenet, D. (2014) Profiling the orphan enzymes. Biol. Direct 9, 10
-
(2014)
Biol. Direct
, vol.9
, pp. 10
-
-
Sorokina, M.1
Stam, M.2
Médigue, C.3
Lespinet, O.4
Vallenet, D.5
-
11
-
-
0034084865
-
Who's your neighbor? New computational approaches for functional genomics
-
Galperin, M. Y., and Koonin, E. V. (2000) Who's your neighbor? New computational approaches for functional genomics. Nat. Biotechnol. 18, 609-613
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 609-613
-
-
Galperin, M.Y.1
Koonin, E.V.2
-
12
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
13
-
-
13244268322
-
A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases
-
Green, M. L., and Karp, P. D. (2004) A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases. BMC Bioinformatics 5, 76
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 76
-
-
Green, M.L.1
Karp, P.D.2
-
14
-
-
0033974688
-
Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins
-
Ito, T., Tashiro, K., Muta, S., Ozawa, R., Chiba, T., Nishizawa, M., Yamamoto, K., Kuhara, S., and Sakaki, Y. (2000) Toward a protein-protein interaction map of the budding yeast: a comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins. Proc. Natl. Acad. Sci. U.S.A. 97, 1143-1147
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 1143-1147
-
-
Ito, T.1
Tashiro, K.2
Muta, S.3
Ozawa, R.4
Chiba, T.5
Nishizawa, M.6
Yamamoto, K.7
Kuhara, S.8
Sakaki, Y.9
-
15
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
Uetz, P., Giot, L., Cagney, G., Mansfield, T. A., Judson, R. S., Knight, J. R., Lockshon, D., Narayan, V., Srinivasan, M., Pochart, P., Qureshi-Emili, A., Li, Y., Godwin, B., Conover, D., Kalbfleisch, T., Vijayadamodar, G., Yang, M., Johnston, M., Fields, S., and Rothberg, J. M. (2000) A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403, 623-627
-
(2000)
Nature
, vol.403
, pp. 623-627
-
-
Uetz, P.1
Giot, L.2
Cagney, G.3
Mansfield, T.A.4
Judson, R.S.5
Knight, J.R.6
Lockshon, D.7
Narayan, V.8
Srinivasan, M.9
Pochart, P.10
Qureshi-Emili, A.11
Li, Y.12
Godwin, B.13
Conover, D.14
Kalbfleisch, T.15
Vijayadamodar, G.16
Yang, M.17
Johnston, M.18
Fields, S.19
Rothberg, J.M.20
more..
-
16
-
-
84984932472
-
Exploring the new world of the genome with DNA microarrays
-
Brown, P. O., and Botstein, D. (1999) Exploring the new world of the genome with DNA microarrays. Nat. Genet. 21, 33-37
-
(1999)
Nat. Genet.
, vol.21
, pp. 33-37
-
-
Brown, P.O.1
Botstein, D.2
-
17
-
-
0030669030
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
DeRisi, J. L., Iyer, V. R., and Brown, P. O. (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278, 680-686
-
(1997)
Science
, vol.278
, pp. 680-686
-
-
DeRisi, J.L.1
Iyer, V.R.2
Brown, P.O.3
-
18
-
-
0033529707
-
Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis
-
Winzeler, E. A., Shoemaker, D. D., Astromoff, A., Liang, H., Anderson, K., Andre, B., Bangham, R., Benito, R., Boeke, J. D., Bussey, H., Chu, A. M., Connelly, C., Davis, K., Dietrich, F., Dow, S. W., El Bakkoury, M., Foury, F., Friend, S. H., Gentalen, E., Giaever, G., Hegemann, J. H., Jones, T., Laub, M., Liao, H., Liebundguth, N., Lockhart, D. J., Lucau-Danila, A., Lussier, M., M'Rabet, N., Menard, P., Mittmann, M., Pai, C., Rebischung, C., Revuelta, J. L., Riles, L., Roberts, C. J., Ross-MacDonald, P., Scherens, B., Snyder, M., Sookhai-Mahadeo, S., Storms, R. K., Véronneau, S., Voet, M., Volckaert, G., Ward, T. R., Wysocki, R., Yen, G. S., Yu, K., Zimmermann, K., Philippsen, P., Johnston, M., and Davis, R. W. (1999) Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285, 901-906
-
(1999)
Science
, vol.285
, pp. 901-906
-
-
Winzeler, E.A.1
Shoemaker, D.D.2
Astromoff, A.3
Liang, H.4
Anderson, K.5
Andre, B.6
Bangham, R.7
Benito, R.8
Boeke, J.D.9
Bussey, H.10
Chu, A.M.11
Connelly, C.12
Davis, K.13
Dietrich, F.14
Dow, S.W.15
El Bakkoury, M.16
Foury, F.17
Friend, S.H.18
Gentalen, E.19
Giaever, G.20
Hegemann, J.H.21
Jones, T.22
Laub, M.23
Liao, H.24
Liebundguth, N.25
Lockhart, D.J.26
Lucau-Danila, A.27
Lussier, M.28
M'Rabet, N.29
Menard, P.30
Mittmann, M.31
Pai, C.32
Rebischung, C.33
Revuelta, J.L.34
Riles, L.35
Roberts, C.J.36
Ross-MacDonald, P.37
Scherens, B.38
Snyder, M.39
Sookhai-Mahadeo, S.40
Storms, R.K.41
Véronneau, S.42
Voet, M.43
Volckaert, G.44
Ward, T.R.45
Wysocki, R.46
Yen, G.S.47
Yu, K.48
Zimmermann, K.49
Philippsen, P.50
Johnston, M.51
Davis, R.W.52
more..
-
19
-
-
0033785799
-
Structural proteomics of an archaeon
-
Christendat, D., Yee, A., Dharamsi, A., Kluger, Y., Savchenko, A., Cort, J. R., Booth, V., Mackereth, C. D., Saridakis, V., Ekiel, I., Kozlov, G., Maxwell, K. L., Wu, N., McIntosh, L. P., Gehring, K., Kennedy, M. A., Davidson, A. R., Pai, E. F., Gerstein, M., Edwards, A. M., and Arrowsmith, C. H. (2000) Structural proteomics of an archaeon. Nat. Struct. Biol. 7, 903-909
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 903-909
-
-
Christendat, D.1
Yee, A.2
Dharamsi, A.3
Kluger, Y.4
Savchenko, A.5
Cort, J.R.6
Booth, V.7
Mackereth, C.D.8
Saridakis, V.9
Ekiel, I.10
Kozlov, G.11
Maxwell, K.L.12
Wu, N.13
McIntosh, L.P.14
Gehring, K.15
Kennedy, M.A.16
Davidson, A.R.17
Pai, E.F.18
Gerstein, M.19
Edwards, A.M.20
Arrowsmith, C.H.21
more..
-
20
-
-
0036468055
-
Structural proteomics: Developments in structure-to-function predictions
-
Norin, M., and Sundström, M. (2002) Structural proteomics: developments in structure-to-function predictions. Trends Biotechnol. 20, 79-84
-
(2002)
Trends Biotechnol.
, vol.20
, pp. 79-84
-
-
Norin, M.1
Sundström, M.2
-
21
-
-
15944426144
-
Enzyme genomics: Application of general enzymatic screens to discover new enzymes
-
Kuznetsova, E., Proudfoot, M., Sanders, S. A., Reinking, J., Savchenko, A., Arrowsmith, C. H., Edwards, A. M., and Yakunin, A. F. (2005) Enzyme genomics: application of general enzymatic screens to discover new enzymes. FEMS Microbiol. Rev. 29, 263-279
-
(2005)
FEMS Microbiol. Rev.
, vol.29
, pp. 263-279
-
-
Kuznetsova, E.1
Proudfoot, M.2
Sanders, S.A.3
Reinking, J.4
Savchenko, A.5
Arrowsmith, C.H.6
Edwards, A.M.7
Yakunin, A.F.8
-
22
-
-
84883152491
-
The COMBREX project: Design, methodology, and initial results
-
Anton, B. P., Chang, Y. C., Brown, P., Choi, H. P., Faller, L. L., Guleria, J., Hu, Z., Klitgord, N., Levy-Moonshine, A., Maksad, A., Mazumdar, V., McGettrick, M., Osmani, L., Pokrzywa, R., Rachlin, J., Swaminathan, R., Allen, B., Housman, G., Monahan, C., Rochussen, K., Tao, K., Bhagwat, A. S., Brenner, S. E., Columbus, L., de Crécy-Lagard, V., Ferguson, D., Fomenkov, A., Gadda, G., Morgan, R. D., Osterman, A. L., Rodionov, D. A., Rodionova, I. A., Rudd, K. E., Söll, D., Spain, J., Xu, S. Y., Bateman, A., Blumenthal, R. M., Bollinger, J. M., Chang, W. S., Ferrer, M., Friedberg, I., Galperin, M. Y., Gobeill, J., Haft, D., Hunt, J., Karp, P., Klimke, W., Krebs, C., Macelis, D., Madupu, R., Martin, M. J., Miller, J. H., O'Donovan, C., Palsson, B., Ruch, P., Setterdahl, A., Sutton, G., Tate, J., Yakunin, A., Tchigvintsev, D., Plata, G., Hu, J., Greiner, R., Horn, D., Sjolander, K., Salzberg, S. L., Vitkup, D., Letovsky, S., Segre, D., DeLisi, C., Roberts, R. J., Steffen, M., and Kasif, S. (2013) The COMBREX project: design, methodology, and initial results. PLoS Biol. 11, e1001638
-
(2013)
PLoS Biol.
, vol.11
-
-
Anton, B.P.1
Chang, Y.C.2
Brown, P.3
Choi, H.P.4
Faller, L.L.5
Guleria, J.6
Hu, Z.7
Klitgord, N.8
Levy-Moonshine, A.9
Maksad, A.10
Mazumdar, V.11
McGettrick, M.12
Osmani, L.13
Pokrzywa, R.14
Rachlin, J.15
Swaminathan, R.16
Allen, B.17
Housman, G.18
Monahan, C.19
Rochussen, K.20
Tao, K.21
Bhagwat, A.S.22
Brenner, S.E.23
Columbus, L.24
De Crécy-Lagard, V.25
Ferguson, D.26
Fomenkov, A.27
Gadda, G.28
Morgan, R.D.29
Osterman, A.L.30
Rodionov, D.A.31
Rodionova, I.A.32
Rudd, K.E.33
Söll, D.34
Spain, J.35
Xu, S.Y.36
Bateman, A.37
Blumenthal, R.M.38
Bollinger, J.M.39
Chang, W.S.40
Ferrer, M.41
Friedberg, I.42
Galperin, M.Y.43
Gobeill, J.44
Haft, D.45
Hunt, J.46
Karp, P.47
Klimke, W.48
Krebs, C.49
Macelis, D.50
Madupu, R.51
Martin, M.J.52
Miller, J.H.53
O'Donovan, C.54
Palsson, B.55
Ruch, P.56
Setterdahl, A.57
Sutton, G.58
Tate, J.59
Yakunin, A.60
Tchigvintsev, D.61
Plata, G.62
Hu, J.63
Greiner, R.64
Horn, D.65
Sjolander, K.66
Salzberg, S.L.67
Vitkup, D.68
Letovsky, S.69
Segre, D.70
DeLisi, C.71
Roberts, R.J.72
Steffen, M.73
Kasif, S.74
more..
-
23
-
-
81255138862
-
The Enzyme Function Initiative
-
Gerlt, J. A., Allen, K. N., Almo, S. C., Armstrong, R. N., Babbitt, P. C., Cronan, J. E., Dunaway-Mariano, D., Imker, H. J., Jacobson, M. P., Minor, W., Poulter, C. D., Raushel, F. M., Sali, A., Shoichet, B. K., and Sweedler, J. V. (2011) The Enzyme Function Initiative. Biochemistry 50, 9950-9962
-
(2011)
Biochemistry
, vol.50
, pp. 9950-9962
-
-
Gerlt, J.A.1
Allen, K.N.2
Almo, S.C.3
Armstrong, R.N.4
Babbitt, P.C.5
Cronan, J.E.6
Dunaway-Mariano, D.7
Imker, H.J.8
Jacobson, M.P.9
Minor, W.10
Poulter, C.D.11
Raushel, F.M.12
Sali, A.13
Shoichet, B.K.14
Sweedler, J.V.15
-
24
-
-
0028116826
-
Computer analysis of bacterial haloacid dehalogenases defines a large superfamily of hydrolases with diverse specificity: Application of an iterative approach to database search
-
Koonin, E. V., and Tatusov, R. L. (1994) Computer analysis of bacterial haloacid dehalogenases defines a large superfamily of hydrolases with diverse specificity: application of an iterative approach to database search. J. Mol. Biol. 244, 125-132
-
(1994)
J. Mol. Biol.
, vol.244
, pp. 125-132
-
-
Koonin, E.V.1
Tatusov, R.L.2
-
25
-
-
33746922036
-
Evolutionary genomics of the HAD superfamily: Understanding the structural adaptations and catalytic diversity in a superfamily of phosphoesterases and allied enzymes
-
Burroughs, A. M., Allen, K. N., Dunaway-Mariano, D., and Aravind, L. (2006) Evolutionary genomics of the HAD superfamily: understanding the structural adaptations and catalytic diversity in a superfamily of phosphoesterases and allied enzymes. J. Mol. Biol. 361, 1003-1034
-
(2006)
J. Mol. Biol.
, vol.361
, pp. 1003-1034
-
-
Burroughs, A.M.1
Allen, K.N.2
Dunaway-Mariano, D.3
Aravind, L.4
-
26
-
-
70549106287
-
Markers of fitness in a successful enzyme superfamily
-
Allen, K. N., and Dunaway-Mariano, D. (2009) Markers of fitness in a successful enzyme superfamily. Curr. Opin. Struct. Biol. 19, 658-665
-
(2009)
Curr. Opin. Struct. Biol.
, vol.19
, pp. 658-665
-
-
Allen, K.N.1
Dunaway-Mariano, D.2
-
27
-
-
0031970010
-
The catalytic domain of the P-type ATPase has the haloacid dehalogenase fold
-
Aravind, L., Galperin, M. Y., and Koonin, E. V. (1998) The catalytic domain of the P-type ATPase has the haloacid dehalogenase fold. Trends Biochem. Sci. 23, 127-129
-
(1998)
Trends Biochem. Sci.
, vol.23
, pp. 127-129
-
-
Aravind, L.1
Galperin, M.Y.2
Koonin, E.V.3
-
28
-
-
84908577179
-
Enzyme promiscuity: Engine of evolutionary innovation
-
Pandya, C., Farelli, J. D., Dunaway-Mariano, D., and Allen, K. N. (2014) Enzyme promiscuity: engine of evolutionary innovation. J. Biol. Chem. 289, 30229-30236
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 30229-30236
-
-
Pandya, C.1
Farelli, J.D.2
Dunaway-Mariano, D.3
Allen, K.N.4
-
29
-
-
0035940484
-
MDP-1 is a new and distinct member of the haloacid dehalogenase family of aspartate-dependent phosphohydrolases
-
Selengut, J. D. (2001) MDP-1 is a new and distinct member of the haloacid dehalogenase family of aspartate-dependent phosphohydrolases. Biochemistry 40, 12704-12711
-
(2001)
Biochemistry
, vol.40
, pp. 12704-12711
-
-
Selengut, J.D.1
-
30
-
-
0035155638
-
Crystal structure of phosphoserine phosphatase from Methanococcus jannaschii, a hyperthermophile, at 1.8 Å resolution
-
Wang, W., Kim, R., Jancarik, J., Yokota, H., and Kim, S. H. (2001) Crystal structure of phosphoserine phosphatase from Methanococcus jannaschii, a hyperthermophile, at 1.8 Å resolution. Structure 9, 65-71
-
(2001)
Structure
, vol.9
, pp. 65-71
-
-
Wang, W.1
Kim, R.2
Jancarik, J.3
Yokota, H.4
Kim, S.H.5
-
31
-
-
9144241174
-
Structure- and function-based characterization of a new phosphoglycolate phosphatase from Thermoplasma acidophilum
-
Kim, Y., Yakunin, A. F., Kuznetsova, E., Xu, X., Pennycooke, M., Gu, J., Cheung, F., Proudfoot, M., Arrowsmith, C. H., Joachimiak, A., Edwards, A. M., and Christendat, D. (2004) Structure- and function-based characterization of a new phosphoglycolate phosphatase from Thermoplasma acidophilum. J. Biol. Chem. 279, 517-526
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 517-526
-
-
Kim, Y.1
Yakunin, A.F.2
Kuznetsova, E.3
Xu, X.4
Pennycooke, M.5
Gu, J.6
Cheung, F.7
Proudfoot, M.8
Arrowsmith, C.H.9
Joachimiak, A.10
Edwards, A.M.11
Christendat, D.12
-
32
-
-
31544471658
-
Structure and activity analyses of Escherichia coli K-12 NagD provide insight into the evolution of biochemical function in the haloalkanoic acid dehalogenase superfamily
-
Tremblay, L. W., Dunaway-Mariano, D., and Allen, K. N. (2006) Structure and activity analyses of Escherichia coli K-12 NagD provide insight into the evolution of biochemical function in the haloalkanoic acid dehalogenase superfamily. Biochemistry 45, 1183-1193
-
(2006)
Biochemistry
, vol.45
, pp. 1183-1193
-
-
Tremblay, L.W.1
Dunaway-Mariano, D.2
Allen, K.N.3
-
33
-
-
80054717981
-
Divergence of structure and function in the haloacid dehalogenase enzyme superfamily: Bacteroides thetaiotaomicron BT2127 is an inorganic pyrophosphatase
-
Huang, H., Patskovsky, Y., Toro, R., Farelli, J. D., Pandya, C., Almo, S. C., Allen, K. N., and Dunaway-Mariano, D. (2011) Divergence of structure and function in the haloacid dehalogenase enzyme superfamily: Bacteroides thetaiotaomicron BT2127 is an inorganic pyrophosphatase. Biochemistry 50, 8937-8949
-
(2011)
Biochemistry
, vol.50
, pp. 8937-8949
-
-
Huang, H.1
Patskovsky, Y.2
Toro, R.3
Farelli, J.D.4
Pandya, C.5
Almo, S.C.6
Allen, K.N.7
Dunaway-Mariano, D.8
-
34
-
-
0032538444
-
FCP1, the RAP74-interacting subunit of a human protein phosphatase that dephosphorylates the carboxyl-terminal domain of RNA polymerase IIO
-
Archambault, J., Pan, G., Dahmus, G. K., Cartier, M., Marshall, N., Zhang, S., Dahmus, M. E., and Greenblatt, J. (1998) FCP1, the RAP74-interacting subunit of a human protein phosphatase that dephosphorylates the carboxyl-terminal domain of RNA polymerase IIO. J. Biol. Chem. 273, 27593-27601
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 27593-27601
-
-
Archambault, J.1
Pan, G.2
Dahmus, G.K.3
Cartier, M.4
Marshall, N.5
Zhang, S.6
Dahmus, M.E.7
Greenblatt, J.8
-
35
-
-
0344443181
-
The transcription factor Eyes absent is a protein tyrosine phosphatase
-
Tootle, T. L., Silver, S. J., Davies, E. L., Newman, V., Latek, R. R., Mills, I. A., Selengut, J. D., Parlikar, B. E., and Rebay, I. (2003) The transcription factor Eyes absent is a protein tyrosine phosphatase. Nature 426, 299-302
-
(2003)
Nature
, vol.426
, pp. 299-302
-
-
Tootle, T.L.1
Silver, S.J.2
Davies, E.L.3
Newman, V.4
Latek, R.R.5
Mills, I.A.6
Selengut, J.D.7
Parlikar, B.E.8
Rebay, I.9
-
36
-
-
0344875035
-
Eya protein phosphatase activity regulates Six1-Dach-Eya transcriptional effects in mammalian organogenesis
-
Li, X., Oghi, K. A., Zhang, J., Krones, A., Bush, K. T., Glass, C. K., Nigam, S. K., Aggarwal, A. K., Maas, R., Rose, D. W., and Rosenfeld, M. G. (2003) Eya protein phosphatase activity regulates Six1-Dach-Eya transcriptional effects in mammalian organogenesis. Nature 426, 247-254
-
(2003)
Nature
, vol.426
, pp. 247-254
-
-
Li, X.1
Oghi, K.A.2
Zhang, J.3
Krones, A.4
Bush, K.T.5
Glass, C.K.6
Nigam, S.K.7
Aggarwal, A.K.8
Maas, R.9
Rose, D.W.10
Rosenfeld, M.G.11
-
37
-
-
0344443179
-
Eyes absent represents a class of protein tyrosine phosphatases
-
Rayapureddi, J. P., Kattamuri, C., Steinmetz, B. D., Frankfort, B. J., Ostrin, E. J., Mardon, G., and Hegde, R. S. (2003) Eyes absent represents a class of protein tyrosine phosphatases. Nature 426, 295-298
-
(2003)
Nature
, vol.426
, pp. 295-298
-
-
Rayapureddi, J.P.1
Kattamuri, C.2
Steinmetz, B.D.3
Frankfort, B.J.4
Ostrin, E.J.5
Mardon, G.6
Hegde, R.S.7
-
38
-
-
12344250639
-
Chronophin, a novel HAD-type serine protein phosphatase, regulates cofilin-dependent actin dynamics
-
Gohla, A., Birkenfeld, J., and Bokoch, G. M. (2005) Chronophin, a novel HAD-type serine protein phosphatase, regulates cofilin-dependent actin dynamics. Nat. Cell Biol. 7, 21-29
-
(2005)
Nat. Cell Biol.
, vol.7
, pp. 21-29
-
-
Gohla, A.1
Birkenfeld, J.2
Bokoch, G.M.3
-
39
-
-
84893665133
-
Evolutionary and structural analyses of mammalian haloacid dehalogenase-type phosphatases AUM and chronophin provide insight into the basis of their different substrate specificities
-
Seifried, A., Knobloch, G., Duraphe, P. S., Segerer, G., Manhard, J., Schindelin, H., Schultz, J., and Gohla, A. (2014) Evolutionary and structural analyses of mammalian haloacid dehalogenase-type phosphatases AUM and chronophin provide insight into the basis of their different substrate specificities. J. Biol. Chem. 289, 3416-3431
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 3416-3431
-
-
Seifried, A.1
Knobloch, G.2
Duraphe, P.S.3
Segerer, G.4
Manhard, J.5
Schindelin, H.6
Schultz, J.7
Gohla, A.8
-
40
-
-
33846023053
-
Genome-wide analysis of substrate specificities of the Escherichia coli haloacid dehalogenase-like phosphatase family
-
Kuznetsova, E., Proudfoot, M., Gonzalez, C. F., Brown, G., Omelchenko, M. V., Borozan, I., Carmel, L., Wolf, Y. I., Mori, H., Savchenko, A. V., Arrowsmith, C. H., Koonin, E. V., Edwards, A. M., and Yakunin, A. F. (2006) Genome-wide analysis of substrate specificities of the Escherichia coli haloacid dehalogenase-like phosphatase family. J. Biol. Chem. 281, 36149-36161
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 36149-36161
-
-
Kuznetsova, E.1
Proudfoot, M.2
Gonzalez, C.F.3
Brown, G.4
Omelchenko, M.V.5
Borozan, I.6
Carmel, L.7
Wolf, Y.I.8
Mori, H.9
Savchenko, A.V.10
Arrowsmith, C.H.11
Koonin, E.V.12
Edwards, A.M.13
Yakunin, A.F.14
-
41
-
-
0028972491
-
DOGR1 and DOGR2: Two genes from Saccharomyces cerevisiae that confer 2-deoxyglucose resistance when overexpressed
-
Randez-Gil, F., Blasco, A., Prieto, J. A., and Sanz, P. (1995) DOGR1 and DOGR2: two genes from Saccharomyces cerevisiae that confer 2-deoxyglucose resistance when overexpressed. Yeast 11, 1233-1240
-
(1995)
Yeast
, vol.11
, pp. 1233-1240
-
-
Randez-Gil, F.1
Blasco, A.2
Prieto, J.A.3
Sanz, P.4
-
42
-
-
0029920291
-
Purification and characterization of two isoenzymes of DL-glycerol-3-phosphatase from Saccharomyces cerevisiae: Identification of the corresponding GPP1 and GPP2 genes and evidence for osmotic regulation of Gpp2p expression by the osmosensing mitogen-activated protein kinase signal transduction pathway
-
Norbeck, J., Pâhlman, A. K., Akhtar, N., Blomberg, A., and Adler, L. (1996) Purification and characterization of two isoenzymes of DL-glycerol-3-phosphatase from Saccharomyces cerevisiae: identification of the corresponding GPP1 and GPP2 genes and evidence for osmotic regulation of Gpp2p expression by the osmosensing mitogen-activated protein kinase signal transduction pathway. J. Biol. Chem. 271, 13875-13881
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 13875-13881
-
-
Norbeck, J.1
Pâhlman, A.K.2
Akhtar, N.3
Blomberg, A.4
Adler, L.5
-
43
-
-
77953614272
-
A mitochondrial phosphatase required for cardiolipin biosynthesis: The PGP phosphatase Gep4
-
Osman, C., Haag, M., Wieland, F. T., Brügger, B., and Langer, T. (2010) A mitochondrial phosphatase required for cardiolipin biosynthesis: the PGP phosphatase Gep4. EMBO J. 29, 1976-1987
-
(2010)
EMBO J.
, vol.29
, pp. 1976-1987
-
-
Osman, C.1
Haag, M.2
Wieland, F.T.3
Brügger, B.4
Langer, T.5
-
44
-
-
0023892916
-
The yeast SEC53 gene encodes phosphomannomutase
-
Kepes, F., and Schekman, R. (1988) The yeast SEC53 gene encodes phosphomannomutase. J. Biol. Chem. 263, 9155-9161
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 9155-9161
-
-
Kepes, F.1
Schekman, R.2
-
45
-
-
0037077298
-
SDT1/SSM1, a multicopy suppressor of S-II null mutant, encodes a novel pyrimidine 5′-nucleotidase
-
Nakanishi, T., and Sekimizu, K. (2002) SDT1/SSM1, a multicopy suppressor of S-II null mutant, encodes a novel pyrimidine 5′-nucleotidase. J. Biol. Chem. 277, 22103-22106
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 22103-22106
-
-
Nakanishi, T.1
Sekimizu, K.2
-
46
-
-
0035805515
-
Uncoupling of 3′-phosphatase and 5′-kinase functions in budding yeast. Characterization of Saccharomyces cerevisiae DNA 3′-phosphatase (TPP1)
-
Vance, J. R., and Wilson, T. E. (2001) Uncoupling of 3′-phosphatase and 5′-kinase functions in budding yeast. Characterization of Saccharomyces cerevisiae DNA 3′-phosphatase (TPP1). J. Biol. Chem. 276, 15073-15081
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 15073-15081
-
-
Vance, J.R.1
Wilson, T.E.2
-
47
-
-
33745866585
-
Magnesium-dependent phosphatase-1 is a protein-fructosamine-6-phosphatase potentially involved in glycation repair
-
Fortpied, J., Maliekal, P., Vertommen, D., and Van Schaftingen, E. (2006) Magnesium-dependent phosphatase-1 is a protein-fructosamine-6-phosphatase potentially involved in glycation repair. J. Biol. Chem. 281, 18378-18385
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 18378-18385
-
-
Fortpied, J.1
Maliekal, P.2
Vertommen, D.3
Van Schaftingen, E.4
-
48
-
-
77954238894
-
Structure and activity of the metal-independent fructose-1,6-bisphosphatase YK23 from Saccharomyces cerevisiae
-
Kuznetsova, E., Xu, L., Singer, A., Brown, G., Dong, A., Flick, R., Cui, H., Cuff, M., Joachimiak, A., Savchenko, A., and Yakunin, A. F. (2010) Structure and activity of the metal-independent fructose-1,6-bisphosphatase YK23 from Saccharomyces cerevisiae. J. Biol. Chem. 285, 21049-21059
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 21049-21059
-
-
Kuznetsova, E.1
Xu, L.2
Singer, A.3
Brown, G.4
Dong, A.5
Flick, R.6
Cui, H.7
Cuff, M.8
Joachimiak, A.9
Savchenko, A.10
Yakunin, A.F.11
-
49
-
-
0031451230
-
Direct detection and measurement of electron relays in a multicentered enzyme: Voltammetry of electrode-surface films of E. coli fumarate reductase, an iron-sulfur flavoprotein
-
Heering, H. A., Weiner, J.H., and Armstrong, F. A. (1997) Direct detection and measurement of electron relays in a multicentered enzyme: voltammetry of electrode-surface films of E. coli fumarate reductase, an iron-sulfur flavoprotein. J. Am. Chem. Soc. 119, 11628-11638
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 11628-11638
-
-
Heering, H.A.1
Weiner, J.H.2
Armstrong, F.A.3
-
50
-
-
84888296777
-
Biochemical and structural studies of conserved Maf proteins revealed nucleotide pyrophosphatases with a preference for modified nucleotides
-
Tchigvintsev, A., Tchigvintsev, D., Flick, R., Popovic, A., Dong, A., Xu, X., Brown, G., Lu, W., Wu, H., Cui, H., Dombrowski, L., Joo, J. C., Beloglazova, N., Min, J., Savchenko, A., Caudy, A. A., Rabinowitz, J. D., Murzin, A. G., and Yakunin, A. F. (2013) Biochemical and structural studies of conserved Maf proteins revealed nucleotide pyrophosphatases with a preference for modified nucleotides. Chem. Biol. 20, 1386-1398
-
(2013)
Chem. Biol.
, vol.20
, pp. 1386-1398
-
-
Tchigvintsev, A.1
Tchigvintsev, D.2
Flick, R.3
Popovic, A.4
Dong, A.5
Xu, X.6
Brown, G.7
Lu, W.8
Wu, H.9
Cui, H.10
Dombrowski, L.11
Joo, J.C.12
Beloglazova, N.13
Min, J.14
Savchenko, A.15
Caudy, A.A.16
Rabinowitz, J.D.17
Murzin, A.G.18
Yakunin, A.F.19
-
51
-
-
84883313454
-
A cross-kingdom Nudix enzyme that pre-empts damage in thiamin metabolism
-
Goyer, A., Hasnain, G., Frelin, O., Ralat, M. A., Gregory, J. F., 3rd, and Hanson, A. D. (2013) A cross-kingdom Nudix enzyme that pre-empts damage in thiamin metabolism. Biochem. J. 454, 533-542
-
(2013)
Biochem. J.
, vol.454
, pp. 533-542
-
-
Goyer, A.1
Hasnain, G.2
Frelin, O.3
Ralat, M.A.4
Gregory, J.F.5
Hanson, A.D.6
-
52
-
-
84884487128
-
ER exit sites are physical and functional core autophagosome biogenesis components
-
Graef, M., Friedman, J. R., Graham, C., Babu, M., and Nunnari, J. (2013) ER exit sites are physical and functional core autophagosome biogenesis components. Mol. Biol. Cell 24, 2918-2931
-
(2013)
Mol. Biol. Cell
, vol.24
, pp. 2918-2931
-
-
Graef, M.1
Friedman, J.R.2
Graham, C.3
Babu, M.4
Nunnari, J.5
-
53
-
-
84891795660
-
Saccharomyces genome database provides new regulation data
-
Costanzo, M. C., Engel, S. R., Wong, E. D., Lloyd, P., Karra, K., Chan, E. T., Weng, S., Paskov, K. M., Roe, G. R., Binkley, G., Hitz, B. C., and Cherry, J. M. (2014) Saccharomyces genome database provides new regulation data. Nucleic Acids Res. 42, D717-D725
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D717-D725
-
-
Costanzo, M.C.1
Engel, S.R.2
Wong, E.D.3
Lloyd, P.4
Karra, K.5
Chan, E.T.6
Weng, S.7
Paskov, K.M.8
Roe, G.R.9
Binkley, G.10
Hitz, B.C.11
Cherry, J.M.12
-
54
-
-
0035190121
-
Structure of Thermotoga maritima stationary phase survival protein SurE: A novel acid phosphatase
-
Zhang, R. G., Skarina, T., Katz, J. E., Beasley, S., Khachatryan, A., Vyas, S., Arrowsmith, C. H., Clarke, S., Edwards, A., Joachimiak, A., and Savchenko, A. (2001) Structure of Thermotoga maritima stationary phase survival protein SurE: a novel acid phosphatase. Structure 9, 1095-1106
-
(2001)
Structure
, vol.9
, pp. 1095-1106
-
-
Zhang, R.G.1
Skarina, T.2
Katz, J.E.3
Beasley, S.4
Khachatryan, A.5
Vyas, S.6
Arrowsmith, C.H.7
Clarke, S.8
Edwards, A.9
Joachimiak, A.10
Savchenko, A.11
-
55
-
-
33644875124
-
The Structural Biology Center 19ID undulator beamline: Facility specifications and protein crystallographic results
-
Rosenbaum, G., Alkire, R. W., Evans, G., Rotella, F. J., Lazarski, K., Zhang, R. G., Ginell, S. L., Duke, N., Naday, I., Lazarz, J., Molitsky, M. J., Keefe, L., Gonczy, J., Rock, L., Sanishvili, R., Walsh, M. A., Westbrook, E., and Joachimiak, A. (2006) The Structural Biology Center 19ID undulator beamline: facility specifications and protein crystallographic results. J. Synchrotron Radiat. 13, 30-45
-
(2006)
J. Synchrotron Radiat.
, vol.13
, pp. 30-45
-
-
Rosenbaum, G.1
Alkire, R.W.2
Evans, G.3
Rotella, F.J.4
Lazarski, K.5
Zhang, R.G.6
Ginell, S.L.7
Duke, N.8
Naday, I.9
Lazarz, J.10
Molitsky, M.J.11
Keefe, L.12
Gonczy, J.13
Rock, L.14
Sanishvili, R.15
Walsh, M.A.16
Westbrook, E.17
Joachimiak, A.18
-
56
-
-
0031059866
-
Processing of x-ray diffraction data collected in oscillation mode
-
Otwinowski, Z., Minor, W. (1997) Processing of x-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
59
-
-
0000449646
-
Improvement of macromolecular electron-density maps by the simultaneous application of real and reciprocal space constraints
-
Cowtan, K. D., and Main, P. (1993) Improvement of macromolecular electron-density maps by the simultaneous application of real and reciprocal space constraints. Acta Crystallogr. D Biol. Crystallogr. 49, 148-157
-
(1993)
Acta Crystallogr. D Biol. Crystallogr.
, vol.49
, pp. 148-157
-
-
Cowtan, K.D.1
Main, P.2
-
60
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Number 4
-
Collaborative Computational Project, Number 4 (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D Biol. Crystallogr. 50, 760-763
-
(1994)
Acta Crystallogr. D Biol. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
61
-
-
0347383761
-
SOLVE and RESOLVE: Automated structure solution and density modification
-
Terwilliger, T. C. (2003) SOLVE and RESOLVE: automated structure solution and density modification. Methods Enzymol. 374, 22-37
-
(2003)
Methods Enzymol.
, vol.374
, pp. 22-37
-
-
Terwilliger, T.C.1
-
62
-
-
0032964481
-
Automated protein model building combined with iterative structure refinement
-
Perrakis, A., Morris, R., and Lamzin, V. S. (1999) Automated protein model building combined with iterative structure refinement. Nat. Struct. Biol. 6, 458-463
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 458-463
-
-
Perrakis, A.1
Morris, R.2
Lamzin, V.S.3
-
63
-
-
37349121133
-
Model preparation in MOLREP and examples of model improvement using x-ray data
-
Lebedev, A. A., Vagin, A. A., and Murshudov, G. N. (2008) Model preparation in MOLREP and examples of model improvement using x-ray data. Acta Crystallogr. D Biol. Crystallogr. 64, 33-39
-
(2008)
Acta Crystallogr. D Biol. Crystallogr.
, vol.64
, pp. 33-39
-
-
Lebedev, A.A.1
Vagin, A.A.2
Murshudov, G.N.3
-
64
-
-
3242886389
-
MOLPROBITY: Structure validation and all-atom contact analysis for nucleic acids and their complexes
-
Davis, I. W., Murray, L. W., Richardson, J. S., and Richardson, D. C. (2004) MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes. Nucleic Acids Res. 32, W615-W619
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. W615-W619
-
-
Davis, I.W.1
Murray, L.W.2
Richardson, J.S.3
Richardson, D.C.4
-
65
-
-
0033165865
-
An unusual eukaryotic protein phosphatase required for transcription by RNA polymerase II and CTD dephosphorylation in S. cerevisiae
-
Kobor, M. S., Archambault, J., Lester, W., Holstege, F. C., Gileadi, O., Jansma, D. B., Jennings, E. G., Kouyoumdjian, F., Davidson, A. R., Young, R. A., and Greenblatt, J. (1999) An unusual eukaryotic protein phosphatase required for transcription by RNA polymerase II and CTD dephosphorylation in S. cerevisiae. Mol. Cell 4, 55-62
-
(1999)
Mol. Cell
, vol.4
, pp. 55-62
-
-
Kobor, M.S.1
Archambault, J.2
Lester, W.3
Holstege, F.C.4
Gileadi, O.5
Jansma, D.B.6
Jennings, E.G.7
Kouyoumdjian, F.8
Davidson, A.R.9
Young, R.A.10
Greenblatt, J.11
-
67
-
-
0024361909
-
Characterization of trehalose-6-phosphate synthase and trehalose-6-phosphate phosphatase of Saccharomyces cerevisiae
-
Vandercammen, A., François, J., and Hers, H. G. (1989) Characterization of trehalose-6-phosphate synthase and trehalose-6-phosphate phosphatase of Saccharomyces cerevisiae. Eur. J. Biochem. 182, 613-620
-
(1989)
Eur. J. Biochem.
, vol.182
, pp. 613-620
-
-
Vandercammen, A.1
François, J.2
Hers, H.G.3
-
68
-
-
84918511181
-
Yeast Nem1-Spo7 protein phosphatase activity on Pah1 phosphatidate phosphatase is specific for the Pho85-Pho80 protein kinase phosphorylation sites
-
Su, W. M., Han, G. S., and Carman, G. M. (2014) Yeast Nem1-Spo7 protein phosphatase activity on Pah1 phosphatidate phosphatase is specific for the Pho85-Pho80 protein kinase phosphorylation sites. J. Biol. Chem. 289, 34699-34708
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 34699-34708
-
-
Su, W.M.1
Han, G.S.2
Carman, G.M.3
-
69
-
-
2942679311
-
The yeast ISN1 (YOR155c) gene encodes a new type of IMP-specific 5′-nucleotidase
-
Itoh, R., Saint-Marc, C., Chaignepain, S., Katahira, R., Schmitter, J. M., and Daignan-Fornier, B. (2003) The yeast ISN1 (YOR155c) gene encodes a new type of IMP-specific 5′-nucleotidase. BMC Biochem. 4, 4
-
(2003)
BMC Biochem.
, vol.4
, pp. 4
-
-
Itoh, R.1
Saint-Marc, C.2
Chaignepain, S.3
Katahira, R.4
Schmitter, J.M.5
Daignan-Fornier, B.6
-
70
-
-
71749096624
-
Identification of Isn1 and Sdt1 as glucose- and vitamin-regulated nicotinamide mononucleotide and nicotinic acid mononucleotide [corrected] 5′-nucleotidases responsible for production of nicotinamide riboside and nicotinic acid riboside
-
Bogan, K. L., Evans, C., Belenky, P., Song, P., Burant, C. F., Kennedy, R., and Brenner, C. (2009) Identification of Isn1 and Sdt1 as glucose- and vitamin-regulated nicotinamide mononucleotide and nicotinic acid mononucleotide [corrected] 5′-nucleotidases responsible for production of nicotinamide riboside and nicotinic acid riboside. J. Biol. Chem. 284, 34861-34869
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 34861-34869
-
-
Bogan, K.L.1
Evans, C.2
Belenky, P.3
Song, P.4
Burant, C.F.5
Kennedy, R.6
Brenner, C.7
-
71
-
-
44049092481
-
The Saccharomyces cerevisiae PHM8 gene encodes a soluble magnesium-dependent lysophosphatidic acid phosphatase
-
Reddy, V. S., Singh, A. K., and Rajasekharan, R. (2008) The Saccharomyces cerevisiae PHM8 gene encodes a soluble magnesium-dependent lysophosphatidic acid phosphatase. J. Biol. Chem. 283, 8846-8854
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 8846-8854
-
-
Reddy, V.S.1
Singh, A.K.2
Rajasekharan, R.3
-
72
-
-
0024815151
-
Molecular characterization of a specific p-nitrophenylphosphatase gene, PHO13, and its mapping by chromosome fragmentation in Saccharomyces cerevisiae
-
Kaneko, Y., Toh-e, A., Banno, I., and Oshima, Y. (1989) Molecular characterization of a specific p-nitrophenylphosphatase gene, PHO13, and its mapping by chromosome fragmentation in Saccharomyces cerevisiae. Mol. Gen. Genet. 220, 133-139
-
(1989)
Mol. Gen. Genet.
, vol.220
, pp. 133-139
-
-
Kaneko, Y.1
Toh-e, A.2
Banno, I.3
Oshima, Y.4
-
73
-
-
34249858414
-
A conserved phosphatase cascade that regulates nuclear membrane biogenesis
-
Kim, Y., Gentry, M. S., Harris, T. E., Wiley, S. E., Lawrence, J. C., Jr., and Dixon, J. E. (2007) A conserved phosphatase cascade that regulates nuclear membrane biogenesis. Proc. Natl. Acad. Sci. U.S.A. 104, 6596-6601
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 6596-6601
-
-
Kim, Y.1
Gentry, M.S.2
Harris, T.E.3
Wiley, S.E.4
Lawrence, J.C.5
Dixon, J.E.6
-
74
-
-
0036198435
-
Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae
-
Ficarro, S. B., McCleland, M. L., Stukenberg, P. T., Burke, D. J., Ross, M. M., Shabanowitz, J., Hunt, D. F., and White, F. M. (2002) Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae. Nat. Biotechnol. 20, 301-305
-
(2002)
Nat. Biotechnol.
, vol.20
, pp. 301-305
-
-
Ficarro, S.B.1
McCleland, M.L.2
Stukenberg, P.T.3
Burke, D.J.4
Ross, M.M.5
Shabanowitz, J.6
Hunt, D.F.7
White, F.M.8
-
75
-
-
33847778786
-
Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry
-
Chi, A., Huttenhower, C., Geer, L. Y., Coon, J. J., Syka, J. E., Bai, D. L., Shabanowitz, J., Burke, D. J., Troyanskaya, O. G., and Hunt, D. F. (2007) Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry. Proc. Natl. Acad. Sci. U.S.A. 104, 2193-2198
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 2193-2198
-
-
Chi, A.1
Huttenhower, C.2
Geer, L.Y.3
Coon, J.J.4
Syka, J.E.5
Bai, D.L.6
Shabanowitz, J.7
Burke, D.J.8
Troyanskaya, O.G.9
Hunt, D.F.10
-
76
-
-
84858297793
-
Porphyromonas gingivalis SerB-mediated dephosphorylation of host cell cofilin modulates invasion efficiency
-
Moffatt, C. E., Inaba, H., Hirano, T., and Lamont, R. J. (2012) Porphyromonas gingivalis SerB-mediated dephosphorylation of host cell cofilin modulates invasion efficiency. Cell Microbiol. 14, 577-588
-
(2012)
Cell Microbiol.
, vol.14
, pp. 577-588
-
-
Moffatt, C.E.1
Inaba, H.2
Hirano, T.3
Lamont, R.J.4
-
77
-
-
84906070899
-
Identification of novel Coxiella burnetii Icm/Dot effectors and genetic analysis of their involvement in modulating a mitogen-activated protein kinase pathway
-
Lifshitz, Z., Burstein, D., Schwartz, K., Shuman, H. A., Pupko, T., and Segal, G. (2014) Identification of novel Coxiella burnetii Icm/Dot effectors and genetic analysis of their involvement in modulating a mitogen-activated protein kinase pathway. Infect. Immun. 82, 3740-3752
-
(2014)
Infect. Immun.
, vol.82
, pp. 3740-3752
-
-
Lifshitz, Z.1
Burstein, D.2
Schwartz, K.3
Shuman, H.A.4
Pupko, T.5
Segal, G.6
-
78
-
-
0242551585
-
A structure-based anatomy of the E. coli metabolome
-
Nobeli, I., Ponstingl, H., Krissinel, E. B., and Thornton, J. M. (2003) A structure-based anatomy of the E. coli metabolome. J. Mol. Biol. 334, 697-719
-
(2003)
J. Mol. Biol.
, vol.334
, pp. 697-719
-
-
Nobeli, I.1
Ponstingl, H.2
Krissinel, E.B.3
Thornton, J.M.4
-
79
-
-
0026605247
-
Genetic analysis of serine biosynthesis and glucose repression in yeast
-
Melcher, K., and Entian, K. D. (1992) Genetic analysis of serine biosynthesis and glucose repression in yeast. Curr. Genet. 21, 295-300
-
(1992)
Curr. Genet.
, vol.21
, pp. 295-300
-
-
Melcher, K.1
Entian, K.D.2
-
80
-
-
0037459081
-
Mitochondria: Releasing power for life and unleashing the machineries of death
-
Newmeyer, D. D., and Ferguson-Miller, S. (2003) Mitochondria: releasing power for life and unleashing the machineries of death. Cell 112, 481-490
-
(2003)
Cell
, vol.112
, pp. 481-490
-
-
Newmeyer, D.D.1
Ferguson-Miller, S.2
-
81
-
-
0010412559
-
Modification of DNA by glucose 6-phosphate induces DNA rearrangements in an Escherichia coli plasmid
-
Bucala, R., Model, P., Russel, M., and Cerami, A. (1985) Modification of DNA by glucose 6-phosphate induces DNA rearrangements in an Escherichia coli plasmid. Proc. Natl. Acad. Sci. U.S.A. 82, 8439-8442
-
(1985)
Proc. Natl. Acad. Sci. U.S.A.
, vol.82
, pp. 8439-8442
-
-
Bucala, R.1
Model, P.2
Russel, M.3
Cerami, A.4
-
82
-
-
0023476062
-
Elevated glucose 6-phosphate levels are associated with plasmid mutations in vivo
-
Lee, A. T., and Cerami, A. (1987) Elevated glucose 6-phosphate levels are associated with plasmid mutations in vivo. Proc. Natl. Acad. Sci. U.S.A. 84, 8311-8314
-
(1987)
Proc. Natl. Acad. Sci. U.S.A.
, vol.84
, pp. 8311-8314
-
-
Lee, A.T.1
Cerami, A.2
-
83
-
-
0026744648
-
Two mechanisms for growth inhibition by elevated transport of sugar phosphates in Escherichia coli
-
Kadner, R. J., Murphy, G. P., and Stephens, C. M. (1992) Two mechanisms for growth inhibition by elevated transport of sugar phosphates in Escherichia coli. J. Gen. Microbiol. 138, 2007-2014
-
(1992)
J. Gen. Microbiol.
, vol.138
, pp. 2007-2014
-
-
Kadner, R.J.1
Murphy, G.P.2
Stephens, C.M.3
-
84
-
-
0017751502
-
Properties of Escherichia coli mutants deficient in enzymes of glycolysis
-
Irani, M. H., and Maitra, P. K. (1977) Properties of Escherichia coli mutants deficient in enzymes of glycolysis. J. Bacteriol. 132, 398-410
-
(1977)
J. Bacteriol.
, vol.132
, pp. 398-410
-
-
Irani, M.H.1
Maitra, P.K.2
-
85
-
-
84876234571
-
Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis
-
Papenfort, K., Sun, Y., Miyakoshi, M., Vanderpool, C. K., and Vogel, J. (2013) Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis. Cell 153, 426-437
-
(2013)
Cell
, vol.153
, pp. 426-437
-
-
Papenfort, K.1
Sun, Y.2
Miyakoshi, M.3
Vanderpool, C.K.4
Vogel, J.5
-
86
-
-
77953077420
-
A global protein kinase and phosphatase interaction network in yeast
-
Breitkreutz, A., Choi, H., Sharom, J. R., Boucher, L., Neduva, V., Larsen, B., Lin, Z. Y., Breitkreutz, B. J., Stark, C., Liu, G., Ahn, J., Dewar-Darch, D., Reguly, T., Tang, X., Almeida, R., Qin, Z. S., Pawson, T., Gingras, A. C., Nesvizhskii, A. I., and Tyers, M. (2010) A global protein kinase and phosphatase interaction network in yeast. Science 328, 1043-1046
-
(2010)
Science
, vol.328
, pp. 1043-1046
-
-
Breitkreutz, A.1
Choi, H.2
Sharom, J.R.3
Boucher, L.4
Neduva, V.5
Larsen, B.6
Lin, Z.Y.7
Breitkreutz, B.J.8
Stark, C.9
Liu, G.10
Ahn, J.11
Dewar-Darch, D.12
Reguly, T.13
Tang, X.14
Almeida, R.15
Qin, Z.S.16
Pawson, T.17
Gingras, A.C.18
Nesvizhskii, A.I.19
Tyers, M.20
more..
-
87
-
-
33847199801
-
Emerging roles of nuclear protein phosphatases
-
Moorhead, G. B., Trinkle-Mulcahy, L., and Ulke-Lemée, A. (2007) Emerging roles of nuclear protein phosphatases. Nat. Rev. Mol. Cell Biol. 8, 234-244
-
(2007)
Nat. Rev. Mol. Cell Biol.
, vol.8
, pp. 234-244
-
-
Moorhead, G.B.1
Trinkle-Mulcahy, L.2
Ulke-Lemée, A.3
-
88
-
-
0037063366
-
The YHR076w gene encodes a type 2C protein phosphatase and represents the seventh PP2C gene in budding yeast
-
Jiang, L., Whiteway, M., Ramos, C., Rodriguez-Medina, J. R., and Shen, S. H. (2002) The YHR076w gene encodes a type 2C protein phosphatase and represents the seventh PP2C gene in budding yeast. FEBS Lett. 527, 323-325
-
(2002)
FEBS Lett.
, vol.527
, pp. 323-325
-
-
Jiang, L.1
Whiteway, M.2
Ramos, C.3
Rodriguez-Medina, J.R.4
Shen, S.H.5
-
89
-
-
34147129534
-
A novel mitochondrial matrix serine/threonine protein phosphatase regulates the mitochondria permeability transition pore and is essential for cellular survival and development
-
Lu, G., Ren, S., Korge, P., Choi, J., Dong, Y., Weiss, J., Koehler, C., Chen, J. N., and Wang, Y. (2007) A novel mitochondrial matrix serine/threonine protein phosphatase regulates the mitochondria permeability transition pore and is essential for cellular survival and development. Genes Dev. 21, 784-796
-
(2007)
Genes Dev.
, vol.21
, pp. 784-796
-
-
Lu, G.1
Ren, S.2
Korge, P.3
Choi, J.4
Dong, Y.5
Weiss, J.6
Koehler, C.7
Chen, J.N.8
Wang, Y.9
-
90
-
-
22544454482
-
Involvement of a mitochondrial phosphatase in the regulation of ATP production and insulin secretion in pancreatic beta cells
-
Pagliarini, D. J., Wiley, S. E., Kimple, M. E., Dixon, J. R., Kelly, P., Worby, C. A., Casey, P. J., and Dixon, J. E. (2005) Involvement of a mitochondrial phosphatase in the regulation of ATP production and insulin secretion in pancreatic beta cells. Mol. Cell 19, 197-207
-
(2005)
Mol. Cell
, vol.19
, pp. 197-207
-
-
Pagliarini, D.J.1
Wiley, S.E.2
Kimple, M.E.3
Dixon, J.R.4
Kelly, P.5
Worby, C.A.6
Casey, P.J.7
Dixon, J.E.8
-
91
-
-
68149128514
-
Mitochondrial phosphoglycerate mutase 5 uses alternate catalytic activity as a protein serine/threonine phosphatase to activate ASK1
-
Takeda, K., Komuro, Y., Hayakawa, T., Oguchi, H., Ishida, Y., Murakami, S., Noguchi, T., Kinoshita, H., Sekine, Y., Iemura, S., Natsume, T., and Ichijo, H. (2009) Mitochondrial phosphoglycerate mutase 5 uses alternate catalytic activity as a protein serine/threonine phosphatase to activate ASK1. Proc. Natl. Acad. Sci. U.S.A. 106, 12301-12305
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 12301-12305
-
-
Takeda, K.1
Komuro, Y.2
Hayakawa, T.3
Oguchi, H.4
Ishida, Y.5
Murakami, S.6
Noguchi, T.7
Kinoshita, H.8
Sekine, Y.9
Iemura, S.10
Natsume, T.11
Ichijo, H.12
-
92
-
-
84884188178
-
Nucleotide degradation and ribose salvage in yeast
-
Xu, Y. F., Létisse, F., Absalan, F., Lu, W., Kuznetsova, E., Brown, G., Caudy, A. A., Yakunin, A. F., Broach, J. R., and Rabinowitz, J. D. (2013) Nucleotide degradation and ribose salvage in yeast. Mol. Syst. Biol. 9, 665
-
(2013)
Mol. Syst. Biol.
, vol.9
, pp. 665
-
-
Xu, Y.F.1
Létisse, F.2
Absalan, F.3
Lu, W.4
Kuznetsova, E.5
Brown, G.6
Caudy, A.A.7
Yakunin, A.F.8
Broach, J.R.9
Rabinowitz, J.D.10
-
93
-
-
84922180958
-
Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells
-
Carlile, T. M., Rojas-Duran, M. F., Zinshteyn, B., Shin, H., Bartoli, K. M., and Gilbert, W. V. (2014) Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells. Nature 515, 143-146
-
(2014)
Nature
, vol.515
, pp. 143-146
-
-
Carlile, T.M.1
Rojas-Duran, M.F.2
Zinshteyn, B.3
Shin, H.4
Bartoli, K.M.5
Gilbert, W.V.6
-
94
-
-
78651335915
-
The RNA Modification Database, RNAMDB: 2011 Update
-
Cantara, W. A., Crain, P. F., Rozenski, J., McCloskey, J. A., Harris, K. A., Zhang, X., Vendeix, F. A., Fabris, D., and Agris, P. F. (2011) The RNA Modification Database, RNAMDB: 2011 update. Nucleic Acids Res. 39, D195-201
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D195-D201
-
-
Cantara, W.A.1
Crain, P.F.2
Rozenski, J.3
McCloskey, J.A.4
Harris, K.A.5
Zhang, X.6
Vendeix, F.A.7
Fabris, D.8
Agris, P.F.9
-
95
-
-
0033935223
-
Pseudouridine in RNA: What, where, how, and why
-
Charette, M., and Gray, M. W. (2000) Pseudouridine in RNA: what, where, how, and why. IUBMB Life 49, 341-351
-
(2000)
IUBMB Life
, vol.49
, pp. 341-351
-
-
Charette, M.1
Gray, M.W.2
-
96
-
-
54449085447
-
Molecular identification of pseudouridine-metabolizing enzymes
-
Preumont, A., Snoussi, K., Stroobant, V., Collet, J. F., and Van Schaftingen, E. (2008) Molecular identification of pseudouridine-metabolizing enzymes. J. Biol. Chem. 283, 25238-25246
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 25238-25246
-
-
Preumont, A.1
Snoussi, K.2
Stroobant, V.3
Collet, J.F.4
Van Schaftingen, E.5
-
97
-
-
73649172976
-
Comparative utilization of pseudouridine triphosphate and uridine triphosphate by ribonucleic acid polymerase
-
Goldberg, I. H., and Rabinowitz, M. (1963) Comparative utilization of pseudouridine triphosphate and uridine triphosphate by ribonucleic acid polymerase. J. Biol. Chem. 238, 1793-1800
-
(1963)
J. Biol. Chem.
, vol.238
, pp. 1793-1800
-
-
Goldberg, I.H.1
Rabinowitz, M.2
-
98
-
-
5344261945
-
The role of deoxyribonucleic acid in ribonucleic acid synthesis: IV. The incorporation of pyrimidine and purine analogues into ribonucleic acid
-
Kahan, F. M., and Hurwitz, J. (1962) The role of deoxyribonucleic acid in ribonucleic acid synthesis: IV. The incorporation of pyrimidine and purine analogues into ribonucleic acid. J. Biol. Chem. 237, 3778-3785
-
(1962)
J. Biol. Chem.
, vol.237
, pp. 3778-3785
-
-
Kahan, F.M.1
Hurwitz, J.2
-
99
-
-
77957919833
-
HDHD1, which is often deleted in X-linked ichthyosis, encodes a pseudouridine-5′-phosphatase
-
Preumont, A., Rzem, R., Vertommen, D., and Van Schaftingen, E. (2010) HDHD1, which is often deleted in X-linked ichthyosis, encodes a pseudouridine-5′-phosphatase. Biochem. J. 431, 237-244
-
(2010)
Biochem. J.
, vol.431
, pp. 237-244
-
-
Preumont, A.1
Rzem, R.2
Vertommen, D.3
Van Schaftingen, E.4
-
100
-
-
0032054379
-
A specific alkaline phosphatase from Saccharomyces cerevisiae with protein phosphatase activity
-
Tuleva, B., Vasileva-Tonkova, E., and Galabova, D. (1998) A specific alkaline phosphatase from Saccharomyces cerevisiae with protein phosphatase activity. FEMS Microbiol. Lett. 161, 139-144
-
(1998)
FEMS Microbiol. Lett.
, vol.161
, pp. 139-144
-
-
Tuleva, B.1
Vasileva-Tonkova, E.2
Galabova, D.3
-
101
-
-
0348140585
-
Abasic sites in DNA: Repair and biological consequences in Saccharomyces cerevisiae
-
Boiteux, S., and Guillet, M. (2004) Abasic sites in DNA: repair and biological consequences in Saccharomyces cerevisiae. DNA Repair 3, 1-12
-
(2004)
DNA Repair
, vol.3
, pp. 1-12
-
-
Boiteux, S.1
Guillet, M.2
-
102
-
-
0034675927
-
Repair of chromosomal abasic sites in vivo involves at least three different repair pathways
-
Otterlei, M., Kavli, B., Standal, R., Skjelbred, C., Bharati, S., and Krokan, H. E. (2000) Repair of chromosomal abasic sites in vivo involves at least three different repair pathways. EMBO J. 19, 5542-5551
-
(2000)
EMBO J.
, vol.19
, pp. 5542-5551
-
-
Otterlei, M.1
Kavli, B.2
Standal, R.3
Skjelbred, C.4
Bharati, S.5
Krokan, H.E.6
-
103
-
-
0141727583
-
Role of 2-phosphoglycolate phosphatase of Escherichia coli in metabolism of the 2-phosphoglycolate formed in DNA repair
-
Teresa Pellicer, M., Felisa Nuñez, M., Aguilar, J., Badia, J., and Baldoma, L. (2003) Role of 2-phosphoglycolate phosphatase of Escherichia coli in metabolism of the 2-phosphoglycolate formed in DNA repair. J. Bacteriol. 185, 5815-5821
-
(2003)
J. Bacteriol.
, vol.185
, pp. 5815-5821
-
-
Teresa Pellicer, M.1
Felisa Nuñez, M.2
Aguilar, J.3
Badia, J.4
Baldoma, L.5
-
104
-
-
57049166496
-
Deleting the paranitrophenyl phosphatase (pNPPase), PHO13, in recombinant Saccharomyces cerevisiae improves growth and ethanol production on D-xylose
-
Van Vleet, J. H., Jeffries, T. W., and Olsson, L. (2008) Deleting the paranitrophenyl phosphatase (pNPPase), PHO13, in recombinant Saccharomyces cerevisiae improves growth and ethanol production on D-xylose. Metab. Eng. 10, 360-369
-
(2008)
Metab. Eng.
, vol.10
, pp. 360-369
-
-
Van Vleet, J.H.1
Jeffries, T.W.2
Olsson, L.3
-
105
-
-
84858748257
-
Deletion of the PHO13 gene in Saccharomyces cerevisiae improves ethanol production from lignocellulosic hydrolysate in the presence of acetic and formic acids, and furfural
-
Fujitomi, K., Sanda, T., Hasunuma, T., and Kondo, A. (2012) Deletion of the PHO13 gene in Saccharomyces cerevisiae improves ethanol production from lignocellulosic hydrolysate in the presence of acetic and formic acids, and furfural. Bioresour. Technol. 111, 161-166
-
(2012)
Bioresour. Technol.
, vol.111
, pp. 161-166
-
-
Fujitomi, K.1
Sanda, T.2
Hasunuma, T.3
Kondo, A.4
-
106
-
-
84874499132
-
Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in Saccharomyces cerevisiae
-
Kim, S. R., Skerker, J. M., Kang, W., Lesmana, A., Wei, N., Arkin, A. P., and Jin, Y. S. (2013) Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in Saccharomyces cerevisiae. PLoS One 8, e57048
-
(2013)
PLoS One
, vol.8
, pp. e57048
-
-
Kim, S.R.1
Skerker, J.M.2
Kang, W.3
Lesmana, A.4
Wei, N.5
Arkin, A.P.6
Jin, Y.S.7
-
107
-
-
0017878274
-
Chemical and functional properties of the native and reconstituted forms of the membrane-bound, aerobic glycerol-3-phosphate dehydrogenase of Escherichia coli
-
Schryvers, A., Lohmeier, E., and Weiner, J. H. (1978) Chemical and functional properties of the native and reconstituted forms of the membrane-bound, aerobic glycerol-3-phosphate dehydrogenase of Escherichia coli. J. Biol. Chem. 253, 783-788
-
(1978)
J. Biol. Chem.
, vol.253
, pp. 783-788
-
-
Schryvers, A.1
Lohmeier, E.2
Weiner, J.H.3
-
108
-
-
33747108569
-
Recent progress in understanding thiamin biosynthesis and its genetic regulation in Saccharomyces cerevisiae
-
Nosaka, K. (2006) Recent progress in understanding thiamin biosynthesis and its genetic regulation in Saccharomyces cerevisiae. Appl. Microbiol. Biotechnol. 72, 30-40
-
(2006)
Appl. Microbiol. Biotechnol.
, vol.72
, pp. 30-40
-
-
Nosaka, K.1
-
109
-
-
67650729745
-
The structural and biochemical foundations of thiamin biosynthesis
-
Jurgenson, C. T., Begley, T. P., and Ealick, S. E. (2009) The structural and biochemical foundations of thiamin biosynthesis. Annu. Rev. Biochem. 78, 569-603
-
(2009)
Annu. Rev. Biochem.
, vol.78
, pp. 569-603
-
-
Jurgenson, C.T.1
Begley, T.P.2
Ealick, S.E.3
-
110
-
-
0142186241
-
A genomic overview of pyridoxal-phosphate-dependent enzymes
-
Percudani, R., and Peracchi, A. (2003) A genomic overview of pyridoxal-phosphate-dependent enzymes. EMBO Rep. 4, 850-854
-
(2003)
EMBO Rep.
, vol.4
, pp. 850-854
-
-
Percudani, R.1
Peracchi, A.2
-
111
-
-
0016765018
-
Characterization of the pyridoxal 5′-phosphate and pyridoxamine 5′-phosphate hydrolase activity in rat liver. Identity with alkaline phosphatase
-
Lumeng, L., and Li, T. K. (1975) Characterization of the pyridoxal 5′-phosphate and pyridoxamine 5′-phosphate hydrolase activity in rat liver. Identity with alkaline phosphatase. J. Biol. Chem. 250, 8126-8131
-
(1975)
J. Biol. Chem.
, vol.250
, pp. 8126-8131
-
-
Lumeng, L.1
Li, T.K.2
-
112
-
-
80054693639
-
Pyridoxal phosphate: Biosynthesis and catabolism
-
Mukherjee, T., Hanes, J., Tews, I., Ealick, S. E., and Begley, T. P. (2011) Pyridoxal phosphate: biosynthesis and catabolism. Biochim. Biophys. Acta 1814, 1585-1596
-
(2011)
Biochim. Biophys. Acta
, vol.1814
, pp. 1585-1596
-
-
Mukherjee, T.1
Hanes, J.2
Tews, I.3
Ealick, S.E.4
Begley, T.P.5
-
113
-
-
0026718842
-
Purification and characterization of vitamin B6-phosphate phosphatase from human erythrocytes
-
Fonda, M. L. (1992) Purification and characterization of vitamin B6-phosphate phosphatase from human erythrocytes. J. Biol. Chem. 267, 15978-15983
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 15978-15983
-
-
Fonda, M.L.1
-
114
-
-
0346118933
-
Human pyridoxal phosphatase: Molecular cloning, functional expression, and tissue distribution
-
Jang, Y. M., Kim, D. W., Kang, T. C., Won, M. H., Baek, N. I., Moon, B. J., Choi, S. Y., and Kwon, O. S. (2003) Human pyridoxal phosphatase: molecular cloning, functional expression, and tissue distribution. J. Biol. Chem. 278, 50040-50046
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 50040-50046
-
-
Jang, Y.M.1
Kim, D.W.2
Kang, T.C.3
Won, M.H.4
Baek, N.I.5
Moon, B.J.6
Choi, S.Y.7
Kwon, O.S.8
-
115
-
-
0029678546
-
Phosphorylation of Ser-3 of cofilin regulates its essential function on actin
-
Moriyama, K., Iida, K., and Yahara, I. (1996) Phosphorylation of Ser-3 of cofilin regulates its essential function on actin. Genes Cells 1, 73-86
-
(1996)
Genes Cells
, vol.1
, pp. 73-86
-
-
Moriyama, K.1
Iida, K.2
Yahara, I.3
-
116
-
-
0030798735
-
Accelerating on a treadmill: ADF/cofilin promotes rapid actin filament turnover in the dynamic cytoskeleton
-
Theriot, J. A. (1997) Accelerating on a treadmill: ADF/cofilin promotes rapid actin filament turnover in the dynamic cytoskeleton. J. Cell Biol. 136, 1165-1168
-
(1997)
J. Cell Biol.
, vol.136
, pp. 1165-1168
-
-
Theriot, J.A.1
-
117
-
-
0030880186
-
Essential functions and actin-binding surfaces of yeast cofilin revealed by systematic mutagenesis
-
Lappalainen, P., Fedorov, E. V., Fedorov, A. A., Almo, S. C., and Drubin, D. G. (1997) Essential functions and actin-binding surfaces of yeast cofilin revealed by systematic mutagenesis. EMBO J. 16, 5520-5530
-
(1997)
EMBO J.
, vol.16
, pp. 5520-5530
-
-
Lappalainen, P.1
Fedorov, E.V.2
Fedorov, A.A.3
Almo, S.C.4
Drubin, D.G.5
-
118
-
-
0037173615
-
Functional profiling of the Saccharomyces cerevisiae genome
-
Giaever, G., Chu, A. M., Ni, L., Connelly, C., Riles, L., Véronneau, S., Dow, S., Lucau-Danila, A., Anderson, K., André, B., Arkin, A. P., Astromoff, A., El-Bakkoury, M., Bangham, R., Benito, R., Brachat, S., Campanaro, S., Curtiss, M., Davis, K., Deutschbauer, A., Entian, K. D., Flaherty, P., Foury, F., Garfinkel, D. J., Gerstein, M., Gotte, D., Güldener, U., Hegemann, J. H., Hempel, S., Herman, Z., Jaramillo, D. F., Kelly, D. E., Kelly, S. L., Kötter, P., LaBonte, D., Lamb, D. C., Lan, N., Liang, H., Liao, H., Liu, L., Luo, C., Lussier, M., Mao, R., Menard, P., Ooi, S. L., Revuelta, J. L., Roberts, C. J., Rose, M., Ross-Macdonald, P., Scherens, B., Schimmack, G., Shafer, B., Shoemaker, D. D., Sookhai-Mahadeo, S., Storms, R. K., Strathern, J. N., Valle, G., Voet, M., Volckaert, G., Wang, C. Y., Ward, T. R., Wilhelmy, J., Winzeler, E. A., Yang, Y., Yen, G., Youngman, E., Yu, K., Bussey, H., Boeke, J. D., Snyder, M., Philippsen, P., Davis, R. W., and Johnston, M. (2002) Functional profiling of the Saccharomyces cerevisiae genome. Nature 418, 387-391
-
(2002)
Nature
, vol.418
, pp. 387-391
-
-
Giaever, G.1
Chu, A.M.2
Ni, L.3
Connelly, C.4
Riles, L.5
Véronneau, S.6
Dow, S.7
Lucau-Danila, A.8
Anderson, K.9
André, B.10
Arkin, A.P.11
Astromoff, A.12
El-Bakkoury, M.13
Bangham, R.14
Benito, R.15
Brachat, S.16
Campanaro, S.17
Curtiss, M.18
Davis, K.19
Deutschbauer, A.20
Entian, K.D.21
Flaherty, P.22
Foury, F.23
Garfinkel, D.J.24
Gerstein, M.25
Gotte, D.26
Güldener, U.27
Hegemann, J.H.28
Hempel, S.29
Herman, Z.30
Jaramillo, D.F.31
Kelly, D.E.32
Kelly, S.L.33
Kötter, P.34
LaBonte, D.35
Lamb, D.C.36
Lan, N.37
Liang, H.38
Liao, H.39
Liu, L.40
Luo, C.41
Lussier, M.42
Mao, R.43
Menard, P.44
Ooi, S.L.45
Revuelta, J.L.46
Roberts, C.J.47
Rose, M.48
Ross-Macdonald, P.49
Scherens, B.50
Schimmack, G.51
Shafer, B.52
Shoemaker, D.D.53
Sookhai-Mahadeo, S.54
Storms, R.K.55
Strathern, J.N.56
Valle, G.57
Voet, M.58
Volckaert, G.59
Wang, C.Y.60
Ward, T.R.61
Wilhelmy, J.62
Winzeler, E.A.63
Yang, Y.64
Yen, G.65
Youngman, E.66
Yu, K.67
Bussey, H.68
Boeke, J.D.69
Snyder, M.70
Philippsen, P.71
Davis, R.W.72
Johnston, M.73
more..
-
119
-
-
0036942348
-
Analysis of membrane stereochemistry with homology modeling of sn-glycerol-1-phosphate dehydrogenase
-
Daiyasu, H., Hiroike, T., Koga, Y., and Toh, H. (2002) Analysis of membrane stereochemistry with homology modeling of sn-glycerol-1-phosphate dehydrogenase. Protein Eng. 15, 987-995
-
(2002)
Protein Eng.
, vol.15
, pp. 987-995
-
-
Daiyasu, H.1
Hiroike, T.2
Koga, Y.3
Toh, H.4
-
121
-
-
0031474318
-
Osmoregulation and glycerol metabolism in the yeast Saccharomyces cerevisiae
-
Nevoigt, E., and Stahl, U. (1997) Osmoregulation and glycerol metabolism in the yeast Saccharomyces cerevisiae. FEMS Microbiol. Rev. 21, 231-241
-
(1997)
FEMS Microbiol. Rev.
, vol.21
, pp. 231-241
-
-
Nevoigt, E.1
Stahl, U.2
-
122
-
-
0035793645
-
The yeast glycerol 3-phosphatases Gpp1p and Gpp2p are required for glycerol biosynthesis and differentially involved in the cellular responses to osmotic, anaerobic, and oxidative stress
-
Pahlman, A. K., Granath, K., Ansell, R., Hohmann, S., and Adler, L. (2001) The yeast glycerol 3-phosphatases Gpp1p and Gpp2p are required for glycerol biosynthesis and differentially involved in the cellular responses to osmotic, anaerobic, and oxidative stress. J. Biol. Chem. 276, 3555-3563
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 3555-3563
-
-
Pahlman, A.K.1
Granath, K.2
Ansell, R.3
Hohmann, S.4
Adler, L.5
-
123
-
-
0036491627
-
Systematic identification of the genes affecting glycogen storage in the yeast Saccharomyces cerevisiae: Implication of the vacuole as a determinant of glycogen level
-
Wilson, W. A., Wang, Z., and Roach, P. J. (2002) Systematic identification of the genes affecting glycogen storage in the yeast Saccharomyces cerevisiae: implication of the vacuole as a determinant of glycogen level. Mol. Cell Proteomics 1, 232-242
-
(2002)
Mol. Cell Proteomics
, vol.1
, pp. 232-242
-
-
Wilson, W.A.1
Wang, Z.2
Roach, P.J.3
-
124
-
-
84893441806
-
Chronophin dimerization is required for proper positioning of its substrate specificity loop
-
Kestler, C., Knobloch, G., Tessmer, I., Jeanclos, E., Schindelin, H., and Gohla, A. (2014) Chronophin dimerization is required for proper positioning of its substrate specificity loop. J. Biol. Chem. 289, 3094-3103
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 3094-3103
-
-
Kestler, C.1
Knobloch, G.2
Tessmer, I.3
Jeanclos, E.4
Schindelin, H.5
Gohla, A.6
-
125
-
-
79952485431
-
Crystal structure of the pyrimidine 5′-nucleotidase SDT1 from Saccharomyces cerevisiae complexed with uridine 5′-monophosphate provides further insight into ligand binding
-
Shi, N., Zhang, Y. J., Chen, H. K., Gao, Y., Teng, M., and Niu, L. (2011) Crystal structure of the pyrimidine 5′-nucleotidase SDT1 from Saccharomyces cerevisiae complexed with uridine 5′-monophosphate provides further insight into ligand binding. Proteins 79, 1358-1362
-
(2011)
Proteins
, vol.79
, pp. 1358-1362
-
-
Shi, N.1
Zhang, Y.J.2
Chen, H.K.3
Gao, Y.4
Teng, M.5
Niu, L.6
-
126
-
-
0041989751
-
CASTp: Computed Atlas of Surface Topography of proteins
-
Binkowski, T. A., Naghibzadeh, S., and Liang, J. (2003) CASTp: Computed Atlas of Surface Topography of proteins. Nucleic Acids Res. 31, 3352-3355
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3352-3355
-
-
Binkowski, T.A.1
Naghibzadeh, S.2
Liang, J.3
-
127
-
-
77953623874
-
Enzyme promiscuity: A mechanistic and evolutionary perspective
-
Khersonsky, O., and Tawfik, D. S. (2010) Enzyme promiscuity: a mechanistic and evolutionary perspective. Annu. Rev. Biochem. 79, 471-505
-
(2010)
Annu. Rev. Biochem.
, vol.79
, pp. 471-505
-
-
Khersonsky, O.1
Tawfik, D.S.2
-
128
-
-
0033972072
-
The probability of duplicate gene preservation by subfunctionalization
-
Lynch, M., and Force, A. (2000) The probability of duplicate gene preservation by subfunctionalization. Genetics 154, 459-473
-
(2000)
Genetics
, vol.154
, pp. 459-473
-
-
Lynch, M.1
Force, A.2
-
129
-
-
4143058332
-
Subfunctionalization: How often does it occur? How long does it take?
-
Ward, R., and Durrett, R. (2004) Subfunctionalization: how often does it occur? how long does it take? Theor. Popul. Biol. 66, 93-100
-
(2004)
Theor. Popul. Biol.
, vol.66
, pp. 93-100
-
-
Ward, R.1
Durrett, R.2
-
130
-
-
0038719689
-
Escherichia coli YrbI is 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
-
Wu, J., and Woodard, R. W. (2003) Escherichia coli YrbI is 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase. J. Biol. Chem. 278, 18117-18123
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 18117-18123
-
-
Wu, J.1
Woodard, R.W.2
-
131
-
-
0036135690
-
Biosynthesis pathway of ADP-L-glycero-β-D-manno-heptose in Escherichia coli
-
Kneidinger, B., Marolda, C., Graninger, M., Zamyatina, A., McArthur, F., Kosma, P., Valvano, M. A., and Messner, P. (2002) Biosynthesis pathway of ADP-L-glycero-β-D-manno-heptose in Escherichia coli. J. Bacteriol. 184, 363-369
-
(2002)
J. Bacteriol.
, vol.184
, pp. 363-369
-
-
Kneidinger, B.1
Marolda, C.2
Graninger, M.3
Zamyatina, A.4
McArthur, F.5
Kosma, P.6
Valvano, M.A.7
Messner, P.8
-
132
-
-
0042902833
-
The COG database: An updated version includes eukaryotes
-
Tatusov, R. L., Fedorova, N. D., Jackson, J. D., Jacobs, A. R., Kiryutin, B., Koonin, E. V., Krylov, D. M., Mazumder, R., Mekhedov, S. L., Nikolskaya, A. N., Rao, B. S., Smirnov, S., Sverdlov, A. V., Vasudevan, S., Wolf, Y. I., Yin, J. J., and Natale, D. A. (2003) The COG database: an updated version includes eukaryotes. BMC Bioinformatics 4, 41
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
Koonin, E.V.6
Krylov, D.M.7
Mazumder, R.8
Mekhedov, S.L.9
Nikolskaya, A.N.10
Rao, B.S.11
Smirnov, S.12
Sverdlov, A.V.13
Vasudevan, S.14
Wolf, Y.I.15
Yin, J.J.16
Natale, D.A.17
-
133
-
-
0141519279
-
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
-
Li, L., Stoeckert, C. J., Jr., and Roos, D. S. (2003) OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 13, 2178-2189
-
(2003)
Genome Res.
, vol.13
, pp. 2178-2189
-
-
Li, L.1
Stoeckert, C.J.2
Roos, D.S.3
|