-
1
-
-
49649120271
-
A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats
-
N. Beloglazova, G. Brown, M.D. Zimmerman, M. Proudfoot, K.S. Makarova, M. Kudritska, S. Kochinyan, S. Wang, M. Chruszcz, and W. Minor A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats J. Biol. Chem. 283 2008 20361 20371
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 20361-20371
-
-
Beloglazova, N.1
Brown, G.2
Zimmerman, M.D.3
Proudfoot, M.4
Makarova, K.S.5
Kudritska, M.6
Kochinyan, S.7
Wang, S.8
Chruszcz, M.9
Minor, W.10
-
2
-
-
68049100110
-
Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
-
B.D. Bennett, E.H. Kimball, M. Gao, R. Osterhout, S.J. Van Dien, and J.D. Rabinowitz Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli Nat. Chem. Biol. 5 2009 593 599
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 593-599
-
-
Bennett, B.D.1
Kimball, E.H.2
Gao, M.3
Osterhout, R.4
Van Dien, S.J.5
Rabinowitz, J.D.6
-
3
-
-
0011731413
-
Enzymatic Synthesis of Deoxyribonucleic Acid. III. The Incorporation of Pyrimidine and Purine Analogues into Deoxyribonucleic Acid
-
M.J. Bessman, I.R. Lehman, J. Adler, S.B. Zimmerman, E.S. Simms, and A. Kornberg Enzymatic Synthesis of Deoxyribonucleic Acid. Iii. The Incorporation of Pyrimidine and Purine Analogues into Deoxyribonucleic Acid Proc. Natl. Acad. Sci. USA 44 1958 633 640
-
(1958)
Proc. Natl. Acad. Sci. USA
, vol.44
, pp. 633-640
-
-
Bessman, M.J.1
Lehman, I.R.2
Adler, J.3
Zimmerman, S.B.4
Simms, E.S.5
Kornberg, A.6
-
4
-
-
0029835350
-
The MutT proteins or "nudix" hydrolases, a family of versatile, widely distributed, "housecleaning" enzymes
-
M.J. Bessman, D.N. Frick, and S.F. O'Handley The MutT proteins or "Nudix" hydrolases, a family of versatile, widely distributed, "housecleaning" enzymes J. Biol. Chem. 271 1996 25059 25062
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 25059-25062
-
-
Bessman, M.J.1
Frick, D.N.2
O'Handley, S.F.3
-
5
-
-
79959564805
-
Maf acts downstream of ComGA to arrest cell division in competent cells of B. Subtilis
-
K. Briley Jr., P. Prepiak, M.J. Dias, J. Hahn, and D. Dubnau Maf acts downstream of ComGA to arrest cell division in competent cells of B. subtilis Mol. Microbiol. 81 2011 23 39
-
(2011)
Mol. Microbiol.
, vol.81
, pp. 23-39
-
-
Briley, Jr.K.1
Prepiak, P.2
Dias, M.J.3
Hahn, J.4
Dubnau, D.5
-
6
-
-
38749142232
-
Characterization of nucleotide pools as a function of physiological state in Escherichia coli
-
M.H. Buckstein, J. He, and H. Rubin Characterization of nucleotide pools as a function of physiological state in Escherichia coli J. Bacteriol. 190 2008 718 726
-
(2008)
J. Bacteriol.
, vol.190
, pp. 718-726
-
-
Buckstein, M.H.1
He, J.2
Rubin, H.3
-
7
-
-
0027223244
-
Amplification of the Bacillus subtilis maf gene results in arrested septum formation
-
Y.X. Butler, Y. Abhayawardhane, and G.C. Stewart Amplification of the Bacillus subtilis maf gene results in arrested septum formation J. Bacteriol. 175 1993 3139 3145
-
(1993)
J. Bacteriol.
, vol.175
, pp. 3139-3145
-
-
Butler, Y.X.1
Abhayawardhane, Y.2
Stewart, G.C.3
-
8
-
-
78651335915
-
The RNA Modification Database, RNAMDB: 2011 update
-
W.A. Cantara, P.F. Crain, J. Rozenski, J.A. McCloskey, K.A. Harris, X. Zhang, F.A. Vendeix, D. Fabris, and P.F. Agris The RNA Modification Database, RNAMDB: 2011 update Nucleic Acids Res. 39 Database issue 2011 D195 D201
-
(2011)
Nucleic Acids Res.
, vol.39
, Issue.DATABASE ISSUE
-
-
Cantara, W.A.1
Crain, P.F.2
Rozenski, J.3
McCloskey, J.A.4
Harris, K.A.5
Zhang, X.6
Vendeix, F.A.7
Fabris, D.8
Agris, P.F.9
-
9
-
-
0031973221
-
All seven comG open reading frames are required for DNA binding during transformation of competent Bacillus subtilis
-
Y.S. Chung, and D. Dubnau All seven comG open reading frames are required for DNA binding during transformation of competent Bacillus subtilis J. Bacteriol. 180 1998 41 45
-
(1998)
J. Bacteriol.
, vol.180
, pp. 41-45
-
-
Chung, Y.S.1
Dubnau, D.2
-
10
-
-
0020564055
-
Nucleotide pools of growing, synchronized and stressed cultures of Saccharomyces cerevisiae
-
G. Ditzelmüller, W. Wöhrer, C.P. Kubicek, and M. Röhr Nucleotide pools of growing, synchronized and stressed cultures of Saccharomyces cerevisiae Arch. Microbiol. 135 1983 63 67
-
(1983)
Arch. Microbiol.
, vol.135
, pp. 63-67
-
-
Ditzelmüller, G.1
Wöhrer, W.2
Kubicek, C.P.3
Röhr, M.4
-
11
-
-
36749034218
-
In situ proteolysis for protein crystallization and structure determination
-
Midwest Center for Structural Genomics Structural Genomics Consortium
-
A. Dong, X. Xu, A.M. Edwards, C. Chang, M. Chruszcz, M. Cuff, M. Cymborowski, R. Di Leo, O. Egorova, E. Evdokimova Midwest Center for Structural Genomics Structural Genomics Consortium In situ proteolysis for protein crystallization and structure determination Nat. Methods 4 2007 1019 1021
-
(2007)
Nat. Methods
, vol.4
, pp. 1019-1021
-
-
Dong, A.1
Xu, X.2
Edwards, A.M.3
Chang, C.4
Chruszcz, M.5
Cuff, M.6
Cymborowski, M.7
Di Leo, R.8
Egorova, O.9
Evdokimova, E.10
-
13
-
-
0036681440
-
Empirical relationships between protein structure and carboxyl pKa values in proteins
-
W.R. Forsyth, J.M. Antosiewicz, and A.D. Robertson Empirical relationships between protein structure and carboxyl pKa values in proteins Proteins 48 2002 388 403
-
(2002)
Proteins
, vol.48
, pp. 388-403
-
-
Forsyth, W.R.1
Antosiewicz, J.M.2
Robertson, A.D.3
-
14
-
-
6044244615
-
'Conserved hypothetical' proteins: Prioritization of targets for experimental study
-
M.Y. Galperin, and E.V. Koonin 'Conserved hypothetical' proteins: prioritization of targets for experimental study Nucleic Acids Res. 32 2004 5452 5463
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 5452-5463
-
-
Galperin, M.Y.1
Koonin, E.V.2
-
15
-
-
33645049083
-
House cleaning, a part of good housekeeping
-
M.Y. Galperin, O.V. Moroz, K.S. Wilson, and A.G. Murzin House cleaning, a part of good housekeeping Mol. Microbiol. 59 2006 5 19
-
(2006)
Mol. Microbiol.
, vol.59
, pp. 5-19
-
-
Galperin, M.Y.1
Moroz, O.V.2
Wilson, K.S.3
Murzin, A.G.4
-
16
-
-
73649172976
-
Comparative utilization of pseudouridine triphosphate and uridine triphosphate by ribonucleic acid polymerase
-
I.H. Goldberg, and M. Rabinowitz Comparative utilization of pseudouridine triphosphate and uridine triphosphate by ribonucleic acid polymerase J. Biol. Chem. 238 1963 1793 1800
-
(1963)
J. Biol. Chem.
, vol.238
, pp. 1793-1800
-
-
Goldberg, I.H.1
Rabinowitz, M.2
-
17
-
-
0029832294
-
Identification of new RNA modifying enzymes by iterative genome search using known modifying enzymes as probes
-
C. Gustafsson, R. Reid, P.J. Greene, and D.V. Santi Identification of new RNA modifying enzymes by iterative genome search using known modifying enzymes as probes Nucleic Acids Res. 24 1996 3756 3762
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 3756-3762
-
-
Gustafsson, C.1
Reid, R.2
Greene, P.J.3
Santi, D.V.4
-
19
-
-
0035048054
-
A ComGA-dependent checkpoint limits growth during the escape from competence
-
B.J. Haijema, J. Hahn, J. Haynes, and D. Dubnau A ComGA-dependent checkpoint limits growth during the escape from competence Mol. Microbiol. 40 2001 52 64
-
(2001)
Mol. Microbiol.
, vol.40
, pp. 52-64
-
-
Haijema, B.J.1
Hahn, J.2
Haynes, J.3
Dubnau, D.4
-
20
-
-
79959568896
-
Cell division blockage: But this time by a surprisingly conserved protein
-
L.W. Hamoen Cell division blockage: but this time by a surprisingly conserved protein Mol. Microbiol. 81 2011 1 3
-
(2011)
Mol. Microbiol.
, vol.81
, pp. 1-3
-
-
Hamoen, L.W.1
-
21
-
-
72449145463
-
'Unknown' proteins and 'orphan' enzymes: The missing half of the engineering parts list - And how to find it
-
A.D. Hanson, A. Pribat, J.C. Waller, and V. de Crécy-Lagard 'Unknown' proteins and 'orphan' enzymes: the missing half of the engineering parts list - and how to find it Biochem. J. 425 2010 1 11
-
(2010)
Biochem. J.
, vol.425
, pp. 1-11
-
-
Hanson, A.D.1
Pribat, A.2
Waller, J.C.3
De Crécy-Lagard, V.4
-
22
-
-
38349191358
-
Mechanism of dTTP inhibition of the bifunctional dCTP deaminase: DUTPase encoded by Mycobacterium tuberculosis
-
S.S. Helt, M. Thymark, P. Harris, C. Aagaard, J. Dietrich, S. Larsen, and M. Willemoes Mechanism of dTTP inhibition of the bifunctional dCTP deaminase:dUTPase encoded by Mycobacterium tuberculosis J. Mol. Biol. 376 2008 554 569
-
(2008)
J. Mol. Biol.
, vol.376
, pp. 554-569
-
-
Helt, S.S.1
Thymark, M.2
Harris, P.3
Aagaard, C.4
Dietrich, J.5
Larsen, S.6
Willemoes, M.7
-
23
-
-
77954288774
-
Dali server: Conservation mapping in 3D
-
L. Holm, and P. Rosenström Dali server: conservation mapping in 3D Nucleic Acids Res. 38 Web Server issue 2010 W545 W549
-
(2010)
Nucleic Acids Res.
, vol.38
, Issue.WEB SERVER ISSUE
-
-
Holm, L.1
Rosenström, P.2
-
24
-
-
17444398048
-
Structure-based identification of a novel NTPase from Methanococcus jannaschii
-
K.Y. Hwang, J.H. Chung, S.H. Kim, Y.S. Han, and Y. Cho Structure-based identification of a novel NTPase from Methanococcus jannaschii Nat. Struct. Biol. 6 1999 691 696
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 691-696
-
-
Hwang, K.Y.1
Chung, J.H.2
Kim, S.H.3
Han, Y.S.4
Cho, Y.5
-
25
-
-
0029885422
-
Structural adaptations in the interaction of EcoRI endonuclease with methylated GAATTC sites
-
L. Jen-Jacobson, L.E. Engler, D.R. Lesser, M.R. Kurpiewski, C. Yee, and B. McVerry Structural adaptations in the interaction of EcoRI endonuclease with methylated GAATTC sites EMBO J. 15 1996 2870 2882
-
(1996)
EMBO J.
, vol.15
, pp. 2870-2882
-
-
Jen-Jacobson, L.1
Engler, L.E.2
Lesser, D.R.3
Kurpiewski, M.R.4
Yee, C.5
McVerry, B.6
-
26
-
-
5344261945
-
The role of deoxyribonucleic acid in ribonucleic acid synthesis. IV. The incorporation of pyrimidine and purine analogues into ribonucleic acid
-
F.M. Kahan, and J. Hurwitz The role of deoxyribonucleic acid in ribonucleic acid synthesis. IV. The incorporation of pyrimidine and purine analogues into ribonucleic acid J. Biol. Chem. 237 1962 3778 3785
-
(1962)
J. Biol. Chem.
, vol.237
, pp. 3778-3785
-
-
Kahan, F.M.1
Hurwitz, J.2
-
27
-
-
33750024279
-
Identifying decomposition products in extracts of cellular metabolites
-
E. Kimball, and J.D. Rabinowitz Identifying decomposition products in extracts of cellular metabolites Anal. Biochem. 358 2006 273 280
-
(2006)
Anal. Biochem.
, vol.358
, pp. 273-280
-
-
Kimball, E.1
Rabinowitz, J.D.2
-
28
-
-
0029945504
-
Pseudouridine synthases: Four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases
-
E.V. Koonin Pseudouridine synthases: four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases Nucleic Acids Res. 24 1996 2411 2415
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 2411-2415
-
-
Koonin, E.V.1
-
29
-
-
12344306119
-
The morphogenetic MreBCD proteins of Escherichia coli form an essential membrane-bound complex
-
T. Kruse, J. Bork-Jensen, and K. Gerdes The morphogenetic MreBCD proteins of Escherichia coli form an essential membrane-bound complex Mol. Microbiol. 55 2005 78 89
-
(2005)
Mol. Microbiol.
, vol.55
, pp. 78-89
-
-
Kruse, T.1
Bork-Jensen, J.2
Gerdes, K.3
-
30
-
-
15944426144
-
Enzyme genomics: Application of general enzymatic screens to discover new enzymes
-
E. Kuznetsova, M. Proudfoot, S.A. Sanders, J. Reinking, A. Savchenko, C.H. Arrowsmith, A.M. Edwards, and A.F. Yakunin Enzyme genomics: Application of general enzymatic screens to discover new enzymes FEMS Microbiol. Rev. 29 2005 263 279
-
(2005)
FEMS Microbiol. Rev.
, vol.29
, pp. 263-279
-
-
Kuznetsova, E.1
Proudfoot, M.2
Sanders, S.A.3
Reinking, J.4
Savchenko, A.5
Arrowsmith, C.H.6
Edwards, A.M.7
Yakunin, A.F.8
-
31
-
-
68249141791
-
Localisation of DivIVA by targeting to negatively curved membranes
-
R. Lenarcic, S. Halbedel, L. Visser, M. Shaw, L.J. Wu, J. Errington, D. Marenduzzo, and L.W. Hamoen Localisation of DivIVA by targeting to negatively curved membranes EMBO J. 28 2009 2272 2282
-
(2009)
EMBO J.
, vol.28
, pp. 2272-2282
-
-
Lenarcic, R.1
Halbedel, S.2
Visser, L.3
Shaw, M.4
Wu, L.J.5
Errington, J.6
Marenduzzo, D.7
Hamoen, L.W.8
-
32
-
-
77951072181
-
Metabolomic analysis via reversed-phase ion-pairing liquid chromatography coupled to a stand alone orbitrap mass spectrometer
-
W. Lu, M.F. Clasquin, E. Melamud, D. Amador-Noguez, A.A. Caudy, and J.D. Rabinowitz Metabolomic analysis via reversed-phase ion-pairing liquid chromatography coupled to a stand alone orbitrap mass spectrometer Anal. Chem. 82 2010 3212 3221
-
(2010)
Anal. Chem.
, vol.82
, pp. 3212-3221
-
-
Lu, W.1
Clasquin, M.F.2
Melamud, E.3
Amador-Noguez, D.4
Caudy, A.A.5
Rabinowitz, J.D.6
-
33
-
-
0034612280
-
Functional implications from crystal structures of the conserved Bacillus subtilis protein Maf with and without dUTP
-
G. Minasov, M. Teplova, G.C. Stewart, E.V. Koonin, W.F. Anderson, and M. Egli Functional implications from crystal structures of the conserved Bacillus subtilis protein Maf with and without dUTP Proc. Natl. Acad. Sci. USA 97 2000 6328 6333
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 6328-6333
-
-
Minasov, G.1
Teplova, M.2
Stewart, G.C.3
Koonin, E.V.4
Anderson, W.F.5
Egli, M.6
-
34
-
-
14644444463
-
Dimeric dUTPases, HisE, and MazG belong to a new superfamily of all-alpha NTP pyrophosphohydrolases with potential "house-cleaning" functions
-
O.V. Moroz, A.G. Murzin, K.S. Makarova, E.V. Koonin, K.S. Wilson, and M.Y. Galperin Dimeric dUTPases, HisE, and MazG belong to a new superfamily of all-alpha NTP pyrophosphohydrolases with potential "house-cleaning" functions J. Mol. Biol. 347 2005 243 255
-
(2005)
J. Mol. Biol.
, vol.347
, pp. 243-255
-
-
Moroz, O.V.1
Murzin, A.G.2
Makarova, K.S.3
Koonin, E.V.4
Wilson, K.S.5
Galperin, M.Y.6
-
36
-
-
0037398732
-
Missing genes in metabolic pathways: A comparative genomics approach
-
A. Osterman, and R. Overbeek Missing genes in metabolic pathways: a comparative genomics approach Curr. Opin. Chem. Biol. 7 2003 238 251
-
(2003)
Curr. Opin. Chem. Biol.
, vol.7
, pp. 238-251
-
-
Osterman, A.1
Overbeek, R.2
-
37
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Z. Otwinowski, and W. Minor Processing of X-ray diffraction data collected in oscillation mode Methods Enzymol. 276 1997 307 326
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
38
-
-
0032964481
-
Automated protein model building combined with iterative structure refinement
-
A. Perrakis, R. Morris, and V.S. Lamzin Automated protein model building combined with iterative structure refinement Nat. Struct. Biol. 6 1999 458 463
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 458-463
-
-
Perrakis, A.1
Morris, R.2
Lamzin, V.S.3
-
39
-
-
34548023950
-
Acidic acetonitrile for cellular metabolome extraction from Escherichia coli
-
J.D. Rabinowitz, and E. Kimball Acidic acetonitrile for cellular metabolome extraction from Escherichia coli Anal. Chem. 79 2007 6167 6173
-
(2007)
Anal. Chem.
, vol.79
, pp. 6167-6173
-
-
Rabinowitz, J.D.1
Kimball, E.2
-
40
-
-
19344377263
-
Identifying protein function - A call for community action
-
R.J. Roberts Identifying protein function - a call for community action PLoS Biol. 2 2004 E42
-
(2004)
PLoS Biol.
, vol.2
, pp. 42
-
-
Roberts, R.J.1
-
41
-
-
35748964414
-
Molecular basis of the antimutagenic activity of the house-cleaning inosine triphosphate pyrophosphatase RdgB from Escherichia coli
-
A. Savchenko, M. Proudfoot, T. Skarina, A. Singer, O. Litvinova, R. Sanishvili, G. Brown, N. Chirgadze, and A.F. Yakunin Molecular basis of the antimutagenic activity of the house-cleaning inosine triphosphate pyrophosphatase RdgB from Escherichia coli J. Mol. Biol. 374 2007 1091 1103
-
(2007)
J. Mol. Biol.
, vol.374
, pp. 1091-1103
-
-
Savchenko, A.1
Proudfoot, M.2
Skarina, T.3
Singer, A.4
Litvinova, O.5
Sanishvili, R.6
Brown, G.7
Chirgadze, N.8
Yakunin, A.F.9
-
42
-
-
79959754068
-
Structure and activity of the Saccharomyces cerevisiae dUTP pyrophosphatase DUT1, an essential housekeeping enzyme
-
A. Tchigvintsev, A.U. Singer, R. Flick, P. Petit, G. Brown, E. Evdokimova, A. Savchenko, and A.F. Yakunin Structure and activity of the Saccharomyces cerevisiae dUTP pyrophosphatase DUT1, an essential housekeeping enzyme Biochem. J. 437 2011 243 253
-
(2011)
Biochem. J.
, vol.437
, pp. 243-253
-
-
Tchigvintsev, A.1
Singer, A.U.2
Flick, R.3
Petit, P.4
Brown, G.5
Evdokimova, E.6
Savchenko, A.7
Yakunin, A.F.8
-
43
-
-
0000560808
-
MOLREP: An automated program for molecular replacement
-
A. Vagin, and A. Teplyakov MOLREP: an automated program for molecular replacement J. Appl. Cryst. 30 1997 1022 1025
-
(1997)
J. Appl. Cryst.
, vol.30
, pp. 1022-1025
-
-
Vagin, A.1
Teplyakov, A.2
-
44
-
-
0026072402
-
Sequence of the downstream flanking region of the shape-determining genes mreBCD of Escherichia coli
-
M. Wachi, M. Doi, T. Ueda, M. Ueki, K. Tsuritani, K. Nagai, and M. Matsuhashi Sequence of the downstream flanking region of the shape-determining genes mreBCD of Escherichia coli Gene 106 1991 135 136
-
(1991)
Gene
, vol.106
, pp. 135-136
-
-
Wachi, M.1
Doi, M.2
Ueda, T.3
Ueki, M.4
Tsuritani, K.5
Nagai, K.6
Matsuhashi, M.7
-
45
-
-
0141621201
-
A new subfamily of the Nudix hydrolase superfamily active on 5-methyl-UTP (ribo-TTP) and UTP
-
W. Xu, J. Shen, C.A. Dunn, and M.J. Bessman A new subfamily of the Nudix hydrolase superfamily active on 5-methyl-UTP (ribo-TTP) and UTP J. Biol. Chem. 278 2003 37492 37496
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 37492-37496
-
-
Xu, W.1
Shen, J.2
Dunn, C.A.3
Bessman, M.J.4
-
46
-
-
26444502629
-
Identification of an ITPase/XTPase in Escherichia coli by structural and biochemical analysis
-
J. Zheng, V.K. Singh, and Z. Jia Identification of an ITPase/XTPase in Escherichia coli by structural and biochemical analysis Structure 13 2005 1511 1520
-
(2005)
Structure
, vol.13
, pp. 1511-1520
-
-
Zheng, J.1
Singh, V.K.2
Jia, Z.3
|