-
1
-
-
84862239242
-
A postassembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
-
Swain MT, Tsai IJ, Assefa SA, Newbold C, Berriman M, Otto TD. A postassembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs. Nat Protoc. 2012;7(7):1260-84.
-
(2012)
Nat Protoc.
, vol.7
, Issue.7
, pp. 1260-1284
-
-
Swain, M.T.1
Tsai, I.J.2
Assefa, S.A.3
Newbold, C.4
Berriman, M.5
Otto, T.D.6
-
2
-
-
40449115745
-
CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novo gene prediction
-
Gross SS, Do CB, Sirota M, Batzoglou S. CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novo gene prediction. Genome Biol. 2007;8(12):R269.
-
(2007)
Genome Biol.
, vol.8
, Issue.12
-
-
Gross, S.S.1
Do, C.B.2
Sirota, M.3
Batzoglou, S.4
-
3
-
-
84898003858
-
The genome sequence of the fungal pathogen Fusarium virguliforme that causes sudden death syndrome in soybean
-
Srivastava SK, Huang X, Brar HK, Fakhoury AM, Bluhm BH, Bhattacharyya MK. The genome sequence of the fungal pathogen Fusarium virguliforme that causes sudden death syndrome in soybean. PLoS One. 2014;9(1):e81832.
-
(2014)
PLoS One.
, vol.9
, Issue.1
-
-
Srivastava, S.K.1
Huang, X.2
Brar, H.K.3
Fakhoury, A.M.4
Bluhm, B.H.5
Bhattacharyya, M.K.6
-
4
-
-
34548669353
-
The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization
-
Cuomo CA, Guldener U, Xu JR, Trail F, Turgeon BG, Di Pietro A, et al. The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science. 2007;317(5843):1400-2.
-
(2007)
Science.
, vol.317
, Issue.5843
, pp. 1400-1402
-
-
Cuomo, C.A.1
Guldener, U.2
Xu, J.R.3
Trail, F.4
Turgeon, B.G.5
Di Pietro, A.6
-
5
-
-
84937691096
-
-
Accessed 01 July 2014.
-
BROAD INSTITUTE. Fungal Genomics. 2015. http://www.broadinstitute.org/ scientific-community/science/projects/fungal-genome-initiative/fungalgenome- initiative. Accessed 01 July 2014.
-
(2015)
Fungal Genomics
-
-
-
6
-
-
84884244686
-
Draft genome sequence of Fusarium fujikuroi B14, the causal agent of the Bakanae disease of rice
-
Jeong H, Lee S, Choi GJ, Lee T, Yun SH. Draft genome sequence of Fusarium fujikuroi B14, the causal agent of the Bakanae disease of rice. Genome Announc. 2013. 1(1):e00035-00013
-
(2013)
Genome Announc
, vol.1
, Issue.1
, pp. e00035-00013
-
-
Jeong, H.1
Lee, S.2
Choi, G.J.3
Lee, T.4
Yun, S.H.5
-
7
-
-
77949714038
-
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
-
Ma LJ, van der Does HC, Borkovich KA, Coleman JJ, Daboussi MJ, Di Pietro A, et al. Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature. 2010;464(7287):367-73.
-
(2010)
Nature.
, vol.464
, Issue.7287
, pp. 367-373
-
-
Ma, L.J.1
van der Does, H.C.2
Borkovich, K.A.3
Coleman, J.J.4
Daboussi, M.J.5
Di Pietro, A.6
-
8
-
-
84997771291
-
Genome sequences of six wheat-infecting fusarium species isolates
-
e00670-13-e00670-13
-
Moolhuijzen PM, Manners JM, Wilcox SA, Bellgard MI, Gardiner DM. Genome sequences of six wheat-infecting fusarium species isolates. Genome Announc. 2013. 1(5):e00670-13-e00670-13
-
(2013)
Genome Announc
, vol.1
, Issue.5
-
-
Moolhuijzen, P.M.1
Manners, J.M.2
Wilcox, S.A.3
Bellgard, M.I.4
Gardiner, D.M.5
-
9
-
-
84998849969
-
Genome Sequence of Fusarium graminearum Isolate CS3005
-
e00227-14
-
Gardiner DM, Stiller J, Kazan K. Genome Sequence of Fusarium graminearum Isolate CS3005. Genome Announc. 2014. 2(2):e00227-14
-
(2014)
Genome Announc
, vol.2
, Issue.2
-
-
Gardiner, D.M.1
Stiller, J.2
Kazan, K.3
-
10
-
-
84888000469
-
Molecular tools for functional genomics in filamentous fungi: recent advances and new strategies
-
Jiang D, Zhu W, Wang Y, Sun C, Zhang KQ, Yang J. Molecular tools for functional genomics in filamentous fungi: recent advances and new strategies. Biotechnol Adv. 2013;31(8):1562-74.
-
(2013)
Biotechnol Adv.
, vol.31
, Issue.8
, pp. 1562-1574
-
-
Jiang, D.1
Zhu, W.2
Wang, Y.3
Sun, C.4
Zhang, K.Q.5
Yang, J.6
-
11
-
-
9944260431
-
Heading for disaster: Fusarium graminearum on cereal crops
-
Goswami RS, Kistler HC. Heading for disaster: Fusarium graminearum on cereal crops. Mol Plant Pathol. 2004;5(6):515-25.
-
(2004)
Mol Plant Pathol.
, vol.5
, Issue.6
, pp. 515-525
-
-
Goswami, R.S.1
Kistler, H.C.2
-
12
-
-
0035406049
-
Identification of deoxynivalenol- and nivalenol-producing chemotypes of Gibberella zeae by using PCR
-
Lee T, Oh DW, Kim HS, Lee J, Kim YH, Yun SH, et al. Identification of deoxynivalenol- and nivalenol-producing chemotypes of Gibberella zeae by using PCR. Appl Environ Microbiol. 2001;67(7):2966-72.
-
(2001)
Appl Environ Microbiol.
, vol.67
, Issue.7
, pp. 2966-2972
-
-
Lee, T.1
Oh, D.W.2
Kim, H.S.3
Lee, J.4
Kim, Y.H.5
Yun, S.H.6
-
13
-
-
33745169692
-
The PKS4 gene of Fusarium graminearum is essential for zearalenone production
-
Lysoe E, Klemsdal SS, Bone KR, Frandsen RJ, Johansen T, Thrane U, et al. The PKS4 gene of Fusarium graminearum is essential for zearalenone production. Appl Environ Microbiol. 2006;72(6):3924-32.
-
(2006)
Appl Environ Microbiol.
, vol.72
, Issue.6
, pp. 3924-3932
-
-
Lysoe, E.1
Klemsdal, S.S.2
Bone, K.R.3
Frandsen, R.J.4
Johansen, T.5
Thrane, U.6
-
14
-
-
0027306797
-
Trichothecene biosynthesis in Fusarium species: chemistry, genetics, and significance
-
Desjardins AE, Hohn TM, McCormick SP. Trichothecene biosynthesis in Fusarium species: chemistry, genetics, and significance. Microbiol Rev. 1993;57(3):595-604.
-
(1993)
Microbiol Rev.
, vol.57
, Issue.3
, pp. 595-604
-
-
Desjardins, A.E.1
Hohn, T.M.2
McCormick, S.P.3
-
15
-
-
0029328518
-
Reduced virulence of Gibberella zeae caused by disruption of a trichothecene toxin biosynthetic gene
-
Proctor RH, Hohn TM, McCormick SP. Reduced virulence of Gibberella zeae caused by disruption of a trichothecene toxin biosynthetic gene. Mol Plant Microbe Interact. 1995;8(4):593-601.
-
(1995)
Mol Plant Microbe Interact.
, vol.8
, Issue.4
, pp. 593-601
-
-
Proctor, R.H.1
Hohn, T.M.2
McCormick, S.P.3
-
16
-
-
84866722270
-
Aflatoxin regulations in a network of global maize trade
-
Wu F, Guclu H. Aflatoxin regulations in a network of global maize trade. PLoS One. 2012;7(9):e45151.
-
(2012)
PLoS One.
, vol.7
, Issue.9
-
-
Wu, F.1
Guclu, H.2
-
17
-
-
84914672925
-
Molecular genetics and genomic approaches to explore Fusarium infection of wheat floral tissue
-
Proctor, R.H. and Brown, D., eds Chapter 12 Norwich, Norfolk, UK: Horizon Scientific Press
-
Urban M, Hammond-Kosack K. Molecular genetics and genomic approaches to explore Fusarium infection of wheat floral tissue. In: Fusarium Genomics and Molecular and Cellular Biology (Proctor, R.H. and Brown, D., eds), Chapter 12 Norwich, Norfolk, UK: Horizon Scientific Press; 2013. p. 43-79.
-
(2013)
Fusarium Genomics and Molecular and Cellular Biology
, pp. 43-79
-
-
Urban, M.1
Hammond-Kosack, K.2
-
18
-
-
32544434499
-
Chromosome complement of the fungal plant pathogen Fusarium graminearum based on genetic and physical mapping and cytological observations
-
Gale LR, Bryant JD, Calvo S, Giese H, Katan T, O'Donnell K, et al. Chromosome complement of the fungal plant pathogen Fusarium graminearum based on genetic and physical mapping and cytological observations. Genetics. 2005;171(3):985-1001.
-
(2005)
Genetics.
, vol.171
, Issue.3
, pp. 985-1001
-
-
Gale, L.R.1
Bryant, J.D.2
Calvo, S.3
Giese, H.4
Katan, T.5
O'Donnell, K.6
-
19
-
-
78651291561
-
FGDB: revisiting the genome annotation of the plant pathogen Fusarium graminearum
-
Wong P, Walter M, Lee W, Mannhaupt G, Munsterkotter M, Mewes HW, et al. FGDB: revisiting the genome annotation of the plant pathogen Fusarium graminearum. Nucleic Acids Res. 2011;39(Database issue):D637-9.
-
(2011)
Nucleic Acids Res.
, vol.39
, Issue.DATABASE ISSUE
, pp. D637-D639
-
-
Wong, P.1
Walter, M.2
Lee, W.3
Mannhaupt, G.4
Munsterkotter, M.5
Mewes, H.W.6
-
20
-
-
33644874806
-
FGDB: a comprehensive fungal genome resource on the plant pathogen Fusarium graminearum
-
Güldener U, Mannhaupt G, Munsterkotter M, Haase D, Oesterheld M, Stumpflen V, et al. FGDB: a comprehensive fungal genome resource on the plant pathogen Fusarium graminearum. Nucleic Acids Res. 2006;34(Database issue):D456-8.
-
(2006)
Nucleic Acids Res.
, vol.34
, Issue.DATABASE ISSUE
, pp. D456-D458
-
-
Güldener, U.1
Mannhaupt, G.2
Munsterkotter, M.3
Haase, D.4
Oesterheld, M.5
Stumpflen, V.6
-
21
-
-
84055178433
-
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
-
Holt C, Yandell M. MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects. BMC Bioinformatics. 2011;12:491.
-
(2011)
BMC Bioinformatics.
, vol.12
, pp. 491
-
-
Holt, C.1
Yandell, M.2
-
22
-
-
84937703689
-
-
Accessed 24 Jan 2015.
-
Ensembl Fungi. 2015. http://fungi.ensembl.org/. Accessed 24 Jan 2015.
-
(2015)
-
-
-
23
-
-
84937684631
-
-
PytoPath. Accessed 24 Jan 2015.
-
PytoPath. 2015. http://www.phytopathdb.org/. Accessed 24 Jan 2015.
-
(2015)
-
-
-
24
-
-
0025731583
-
Structure and function of telomeres
-
Blackburn EH. Structure and function of telomeres. Nature. 1991;350(6319):569-73.
-
(1991)
Nature.
, vol.350
, Issue.6319
, pp. 569-573
-
-
Blackburn, E.H.1
-
25
-
-
0024436330
-
Conservation of the human telomere sequence (TTAGGG)n among vertebrates
-
Meyne J, Ratliff RL, Moyzis RK. Conservation of the human telomere sequence (TTAGGG)n among vertebrates. Proc Natl Acad Sci U S A. 1989;86(18):7049-53.
-
(1989)
Proc Natl Acad Sci U S A.
, vol.86
, Issue.18
, pp. 7049-7053
-
-
Meyne, J.1
Ratliff, R.L.2
Moyzis, R.K.3
-
26
-
-
33847702910
-
MEGAN analysis of metagenomic data
-
Huson DH, Auch AF, Qi J, Schuster SC. MEGAN analysis of metagenomic data. Genome Res. 2007;17(3):377-86.
-
(2007)
Genome Res.
, vol.17
, Issue.3
, pp. 377-386
-
-
Huson, D.H.1
Auch, A.F.2
Qi, J.3
Schuster, S.C.4
-
27
-
-
84887305892
-
The Fusarium graminearum histone H3 K27 methyltransferase KMT6 regulates development and expression of secondary metabolite gene clusters
-
Connolly LR, Smith KM, Freitag M, The Fusarium graminearum histone H3 K27 methyltransferase KMT6 regulates development and expression of secondary metabolite gene clusters. PLoS Genetics, 2013. 9(10):e1003916
-
(2013)
PLoS Genetics
, vol.9
, Issue.10
-
-
Connolly, L.R.1
Smith, K.M.2
Freitag, M.3
-
28
-
-
0035991124
-
Genomics of phytopathogenic fungi and the development of bioinformatic resources
-
Soanes DM, Skinner W, Keon J, Hargreaves J, Talbot NJ. Genomics of phytopathogenic fungi and the development of bioinformatic resources. Mol Plant Microbe Interact. 2002;15(5):421-7.
-
(2002)
Mol Plant Microbe Interact.
, vol.15
, Issue.5
, pp. 421-427
-
-
Soanes, D.M.1
Skinner, W.2
Keon, J.3
Hargreaves, J.4
Talbot, N.J.5
-
29
-
-
0025759958
-
Differential targeting of the tobacco PR-1 pathogenesis-related proteins to the extracellular space and vacuoles of crystal idioblasts
-
Dixon DC, Cutt JR, Klessig DF. Differential targeting of the tobacco PR-1 pathogenesis-related proteins to the extracellular space and vacuoles of crystal idioblasts. EMBO J. 1991;10(6):1317-24.
-
(1991)
EMBO J.
, vol.10
, Issue.6
, pp. 1317-1324
-
-
Dixon, D.C.1
Cutt, J.R.2
Klessig, D.F.3
-
30
-
-
84890891983
-
Molecular mechanism of GTPase activation at the signal recognition particle (SRP) RNA distal end
-
Shen K, Wang Y, Hwang Fu YH, Zhang Q, Feigon J, Shan SO. Molecular mechanism of GTPase activation at the signal recognition particle (SRP) RNA distal end. J Biol Chem. 2013;288(51):36385-97.
-
(2013)
J Biol Chem.
, vol.288
, Issue.51
, pp. 36385-36397
-
-
Shen, K.1
Wang, Y.2
Hwang Fu, Y.H.3
Zhang, Q.4
Feigon, J.5
Shan, S.O.6
-
31
-
-
0029858993
-
The signal recognition particle and related small cytoplasmic ribonucleoprotein particles
-
Bovia F, Strub K. The signal recognition particle and related small cytoplasmic ribonucleoprotein particles. J Cell Sci. 1996;109(Pt 11):2601-8.
-
(1996)
J Cell Sci.
, vol.109
, pp. 2601-2608
-
-
Bovia, F.1
Strub, K.2
-
33
-
-
70450198122
-
Evidence that a secondary metabolic biosynthetic gene cluster has grown by gene relocation during evolution of the filamentous fungus Fusarium
-
Proctor RH, McCormick SP, Alexander NJ, Desjardins AE. Evidence that a secondary metabolic biosynthetic gene cluster has grown by gene relocation during evolution of the filamentous fungus Fusarium. Mol Microbiol. 2009;74(5):1128-42.
-
(2009)
Mol Microbiol.
, vol.74
, Issue.5
, pp. 1128-1142
-
-
Proctor, R.H.1
McCormick, S.P.2
Alexander, N.J.3
Desjardins, A.E.4
-
34
-
-
80052629825
-
Deoxynivalenol biosynthesis-related gene expression during wheat kernel colonization by Fusarium graminearum
-
Hallen-Adams HE, Wenner N, Kuldau GA, Trail F. Deoxynivalenol biosynthesis-related gene expression during wheat kernel colonization by Fusarium graminearum. Phytopathology. 2011;101(9):1091-6.
-
(2011)
Phytopathology.
, vol.101
, Issue.9
, pp. 1091-1096
-
-
Hallen-Adams, H.E.1
Wenner, N.2
Kuldau, G.A.3
Trail, F.4
-
37
-
-
27944479301
-
Two different polyketide synthase genes are required for synthesis of zearalenone in Gibberella zeae
-
Kim YT, Lee YR, Jin J, Han KH, Kim H, Kim JC, et al. Two different polyketide synthase genes are required for synthesis of zearalenone in Gibberella zeae. Mol Microbiol. 2005;58(4):1102-13.
-
(2005)
Mol Microbiol.
, vol.58
, Issue.4
, pp. 1102-1113
-
-
Kim, Y.T.1
Lee, Y.R.2
Jin, J.3
Han, K.H.4
Kim, H.5
Kim, J.C.6
-
38
-
-
72949093855
-
Novel genes of Fusarium graminearum that negatively regulate deoxynivalenol production and virulence
-
Gardiner DM, Kazan K, Manners JM. Novel genes of Fusarium graminearum that negatively regulate deoxynivalenol production and virulence. Mol Plant Microbe Interact. 2009;22(12):1588-600.
-
(2009)
Mol Plant Microbe Interact.
, vol.22
, Issue.12
, pp. 1588-1600
-
-
Gardiner, D.M.1
Kazan, K.2
Manners, J.M.3
-
39
-
-
9944226571
-
Tri1 in Fusarium graminearum encodes a P450 oxygenase
-
McCormick SP, Harris LJ, Alexander NJ, Ouellet T, Saparno A, Allard S, et al. Tri1 in Fusarium graminearum encodes a P450 oxygenase. Appl Environ Microbiol. 2004;70(4):2044-51.
-
(2004)
Appl Environ Microbiol.
, vol.70
, Issue.4
, pp. 2044-2051
-
-
McCormick, S.P.1
Harris, L.J.2
Alexander, N.J.3
Ouellet, T.4
Saparno, A.5
Allard, S.6
-
40
-
-
84937702088
-
-
V. K. Gupta, S. Sreenivasaprasad, and Robert L. Mach, Editor. John Wiley & Sons, Ltd, Chichester, UK
-
Brown NA, Hammond-Kosack KE. Secreted biomolecules in fungal plant pathogenesis, in fungal biomolecules: sources, applications and recent developments, V. K. Gupta, S. Sreenivasaprasad, and Robert L. Mach, Editor. John Wiley & Sons, Ltd, Chichester, UK; 2015.
-
(2015)
Secreted biomolecules in fungal plant pathogenesis, in fungal biomolecules: sources, applications and recent developments
-
-
Brown, N.A.1
Hammond-Kosack, K.E.2
-
42
-
-
84859512402
-
The predicted secretome of the plant pathogenic fungus Fusarium graminearum: a refined comparative analysis
-
Brown NA, Antoniw J, Hammond-Kosack KE. The predicted secretome of the plant pathogenic fungus Fusarium graminearum: a refined comparative analysis. PLoS One. 2012;7(4):e33731.
-
(2012)
PLoS One.
, vol.7
, Issue.4
-
-
Brown, N.A.1
Antoniw, J.2
Hammond-Kosack, K.E.3
-
43
-
-
84860539572
-
Secretomics identifies Fusarium graminearum proteins involved in the interaction with barley and wheat
-
Yang F, Jensen JD, Svensson B, Jorgensen HJ, Collinge DB, Finnie C. Secretomics identifies Fusarium graminearum proteins involved in the interaction with barley and wheat. Mol Plant Pathol. 2012;13(5):445-53.
-
(2012)
Mol Plant Pathol.
, vol.13
, Issue.5
, pp. 445-453
-
-
Yang, F.1
Jensen, J.D.2
Svensson, B.3
Jorgensen, H.J.4
Collinge, D.B.5
Finnie, C.6
-
44
-
-
34748923122
-
Comparative proteomics of extracellular proteins in vitro and in planta from the pathogenic fungus Fusarium graminearum
-
Paper JM, Scott-Craig JS, Adhikari ND, Cuomo CA, Walton JD. Comparative proteomics of extracellular proteins in vitro and in planta from the pathogenic fungus Fusarium graminearum. Proteomics. 2007;7(17):3171-83.
-
(2007)
Proteomics.
, vol.7
, Issue.17
, pp. 3171-3183
-
-
Paper, J.M.1
Scott-Craig, J.S.2
Adhikari, N.D.3
Cuomo, C.A.4
Walton, J.D.5
-
45
-
-
37549012939
-
The birth of the centromere
-
Villasante A, Mendez-Lago M, Abad JP, Montejo de Garcini E. The birth of the centromere. Cell Cycle. 2007;6(23):2872-6.
-
(2007)
Cell Cycle.
, vol.6
, Issue.23
, pp. 2872-2876
-
-
Villasante, A.1
Mendez-Lago, M.2
Abad, J.P.3
Montejo de Garcini, E.4
-
46
-
-
0032568168
-
The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals
-
van der Biezen EA, Jones JD. The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol. 1998;8(7):R226-7.
-
(1998)
Curr Biol.
, vol.8
, Issue.7
, pp. R226-R227
-
-
van der Biezen, E.A.1
Jones, J.D.2
-
47
-
-
84941043668
-
The Pathogen-Host Interactions database (PHI-base): additions and future developments
-
Urban M, Pant R, Raghunath A, Irvine AG, Pedro H, Hammond-Kosack KE. The Pathogen-Host Interactions database (PHI-base): additions and future developments. Nucleic Acids Res. 2015;43(Database issue):D645-55.
-
(2015)
Nucleic Acids Res.
, vol.43
, Issue.DATABASE ISSUE
, pp. D645-D655
-
-
Urban, M.1
Pant, R.2
Raghunath, A.3
Irvine, A.G.4
Pedro, H.5
Hammond-Kosack, K.E.6
-
48
-
-
80055103105
-
A phenome-based functional analysis of transcription factors in the cereal head blight fungus, Fusarium graminearum
-
Son H, Seo YS, Min K, Park AR, Lee J, Jin JM, et al. A phenome-based functional analysis of transcription factors in the cereal head blight fungus, Fusarium graminearum. PLoS Pathog. 2011;7(10):e1002310.
-
(2011)
PLoS Pathog.
, vol.7
, Issue.10
-
-
Son, H.1
Seo, Y.S.2
Min, K.3
Park, A.R.4
Lee, J.5
Jin, J.M.6
-
49
-
-
84855259016
-
Functional analysis of the kinome of the wheat scab fungus Fusarium graminearum
-
Wang C, Zhang S, Hou R, Zhao Z, Zheng Q, Xu Q, et al. Functional analysis of the kinome of the wheat scab fungus Fusarium graminearum. PLoS Pathog. 2011;7(12):e1002460.
-
(2011)
PLoS Pathog.
, vol.7
, Issue.12
-
-
Wang, C.1
Zhang, S.2
Hou, R.3
Zhao, Z.4
Zheng, Q.5
Xu, Q.6
-
50
-
-
79952011931
-
ATP citrate lyase is required for normal sexual and asxexual development in Gibberella zeae
-
Son H, Lee J, Park AR, Lee YW. ATP citrate lyase is required for normal sexual and asxexual development in Gibberella zeae. Fungal Genet Biol. 2011;48(4):408-17.
-
(2011)
Fungal Genet Biol.
, vol.48
, Issue.4
, pp. 408-417
-
-
Son, H.1
Lee, J.2
Park, A.R.3
Lee, Y.W.4
-
51
-
-
77649187372
-
Functional analyses of two syntaxin-like SNARE genes, GzSYN1 and GzSYN2, in the ascomycete Gibberella zeae
-
Hong SY, So J, Lee J, Min K, Son H, Park C, et al. Functional analyses of two syntaxin-like SNARE genes, GzSYN1 and GzSYN2, in the ascomycete Gibberella zeae. Fungal Genet Biol. 2010;47(4):364-72.
-
(2010)
Fungal Genet Biol.
, vol.47
, Issue.4
, pp. 364-372
-
-
Hong, S.Y.1
So, J.2
Lee, J.3
Min, K.4
Son, H.5
Park, C.6
-
52
-
-
0036244955
-
The complex structure and dynamic evolution of human subtelomeres
-
Mefford HC, Trask BJ. The complex structure and dynamic evolution of human subtelomeres. Nat Rev Genet. 2002;3(2):91-102.
-
(2002)
Nat Rev Genet.
, vol.3
, Issue.2
, pp. 91-102
-
-
Mefford, H.C.1
Trask, B.J.2
-
53
-
-
0037015614
-
Genome sequence of the human malaria parasite Plasmodium falciparum
-
Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, et al. Genome sequence of the human malaria parasite Plasmodium falciparum. Nature. 2002;419(6906):498-511.
-
(2002)
Nature.
, vol.419
, Issue.6906
, pp. 498-511
-
-
Gardner, M.J.1
Hall, N.2
Fung, E.3
White, O.4
Berriman, M.5
Hyman, R.W.6
-
54
-
-
0037277240
-
Genetic diversity in yeast assessed with whole-genome oligonucleotide arrays
-
Winzeler EA, Castillo-Davis CI, Oshiro G, Liang D, Richards DR, Zhou Y, et al. Genetic diversity in yeast assessed with whole-genome oligonucleotide arrays. Genetics. 2003;163(1):79-89.
-
(2003)
Genetics.
, vol.163
, Issue.1
, pp. 79-89
-
-
Winzeler, E.A.1
Castillo-Davis, C.I.2
Oshiro, G.3
Liang, D.4
Richards, D.R.5
Zhou, Y.6
-
55
-
-
0031839901
-
Structure of the chromosome VII centromere region in Neurospora crassa: degenerate transposons and simple repeats
-
Cambareri EB, Aisner R, Carbon J. Structure of the chromosome VII centromere region in Neurospora crassa: degenerate transposons and simple repeats. Mol Cell Biol. 1998;18(9):5465-77.
-
(1998)
Mol Cell Biol.
, vol.18
, Issue.9
, pp. 5465-5477
-
-
Cambareri, E.B.1
Aisner, R.2
Carbon, J.3
-
56
-
-
0037172977
-
A cytosine methyltransferase homologue is essential for repeat-induced point mutation in Neurospora crassa
-
Freitag M, Williams RL, Kothe GO, Selker EU. A cytosine methyltransferase homologue is essential for repeat-induced point mutation in Neurospora crassa. Proc Natl Acad Sci U S A. 2002;99(13):8802-7.
-
(2002)
Proc Natl Acad Sci U S A.
, vol.99
, Issue.13
, pp. 8802-8807
-
-
Freitag, M.1
Williams, R.L.2
Kothe, G.O.3
Selker, E.U.4
-
57
-
-
17144462135
-
DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae
-
Heidelberg JF, Eisen JA, Nelson WC, Clayton RA, Gwinn ML, Dodson RJ, et al. DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae. Nature. 2000;406(6795):477-83.
-
(2000)
Nature.
, vol.406
, Issue.6795
, pp. 477-483
-
-
Heidelberg, J.F.1
Eisen, J.A.2
Nelson, W.C.3
Clayton, R.A.4
Gwinn, M.L.5
Dodson, R.J.6
-
58
-
-
0031458333
-
The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus
-
Klenk HP, Clayton RA, Tomb JF, White O, Nelson KE, Ketchum KA, et al. The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature. 1997;390(6658):364-70.
-
(1997)
Nature.
, vol.390
, Issue.6658
, pp. 364-370
-
-
Klenk, H.P.1
Clayton, R.A.2
Tomb, J.F.3
White, O.4
Nelson, K.E.5
Ketchum, K.A.6
-
59
-
-
84942887758
-
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
-
Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J, et al. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. GigaScience. 2012;1(1):18.
-
(2012)
GigaScience.
, vol.1
, Issue.1
, pp. 18
-
-
Luo, R.1
Liu, B.2
Xie, Y.3
Li, Z.4
Huang, W.5
Yuan, J.6
-
60
-
-
78650909427
-
Limitations of next-generation genome sequence assembly
-
Alkan C, Sajjadian S, Eichler EE. Limitations of next-generation genome sequence assembly. Nat Methods. 2011;8(1):61-5.
-
(2011)
Nat Methods.
, vol.8
, Issue.1
, pp. 61-65
-
-
Alkan, C.1
Sajjadian, S.2
Eichler, E.E.3
-
61
-
-
84864883022
-
Centromeres of filamentous fungi
-
Smith KM, Galazka JM, Phatale PA, Connolly LR, Freitag M. Centromeres of filamentous fungi. Chromosome Res. 2012;20(5):635-56.
-
(2012)
Chromosome Res.
, vol.20
, Issue.5
, pp. 635-656
-
-
Smith, K.M.1
Galazka, J.M.2
Phatale, P.A.3
Connolly, L.R.4
Freitag, M.5
-
62
-
-
0037459109
-
Centromeres and kinetochores: from epigenetics to mitotic checkpoint signaling
-
Cleveland DW, Mao Y, Sullivan KF. Centromeres and kinetochores: from epigenetics to mitotic checkpoint signaling. Cell. 2003;112(4):407-21.
-
(2003)
Cell.
, vol.112
, Issue.4
, pp. 407-421
-
-
Cleveland, D.W.1
Mao, Y.2
Sullivan, K.F.3
-
63
-
-
33744786043
-
Phylogenetic and structural analysis of centromeric DNA and kinetochore proteins
-
Meraldi P, McAinsh AD, Rheinbay E, Sorger PK. Phylogenetic and structural analysis of centromeric DNA and kinetochore proteins. Genome Biol. 2006;7(3):R23.
-
(2006)
Genome Biol.
, vol.7
, Issue.3
-
-
Meraldi, P.1
McAinsh, A.D.2
Rheinbay, E.3
Sorger, P.K.4
-
64
-
-
3843076217
-
Centromeric DNA sequences in the pathogenic yeast Candida albicans are all different and unique
-
Sanyal K, Baum M, Carbon J. Centromeric DNA sequences in the pathogenic yeast Candida albicans are all different and unique. Proc Natl Acad Sci U S A. 2004;101(31):11374-9.
-
(2004)
Proc Natl Acad Sci U S A.
, vol.101
, Issue.31
, pp. 11374-11379
-
-
Sanyal, K.1
Baum, M.2
Carbon, J.3
-
65
-
-
84859512402
-
The predicted secretome of the plant pathogenic fungus Fusarium graminearum: a refined comparative analysis
-
Brown NA, Antoniw J, Hammond-Kosack KE. The predicted secretome of the plant pathogenic fungus Fusarium graminearum: a refined comparative analysis. Plos One. 2012. 7(4):e33731
-
(2012)
Plos One
, vol.7
, Issue.4
-
-
Brown, N.A.1
Antoniw, J.2
Hammond-Kosack, K.E.3
-
66
-
-
28844461287
-
Sequencing of Aspergillus nidulans and comparative analysis with A fumigatus and A. oryzae
-
Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, et al. Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae. Nature. 2005;438(7071):1105-15.
-
(2005)
Nature.
, vol.438
, Issue.7071
, pp. 1105-1115
-
-
Galagan, J.E.1
Calvo, S.E.2
Cuomo, C.3
Ma, L.J.4
Wortman, J.R.5
Batzoglou, S.6
-
67
-
-
34247626534
-
Transcriptional regulation of chemical diversity in Aspergillus fumigatus by LaeA
-
Perrin RM, Fedorova ND, Bok JW, Cramer RA, Wortman JR, Kim HS, et al. Transcriptional regulation of chemical diversity in Aspergillus fumigatus by LaeA. PLoS Pathog. 2007;3(4):e50.
-
(2007)
PLoS Pathog.
, vol.3
, Issue.4
-
-
Perrin, R.M.1
Fedorova, N.D.2
Bok, J.W.3
Cramer, R.A.4
Wortman, J.R.5
Kim, H.S.6
-
68
-
-
84908037987
-
The Fusarium graminearum genome reveals more secondary metabolite gene clusters and hints of horizontal gene transfer
-
Sieber CM, Lee W, Wong P, Munsterkotter M, Mewes HW, Schmeitzl C, et al. The Fusarium graminearum genome reveals more secondary metabolite gene clusters and hints of horizontal gene transfer. PLoS One. 2014;9(10):e110311.
-
(2014)
PLoS One.
, vol.9
, Issue.10
-
-
Sieber, C.M.1
Lee, W.2
Wong, P.3
Munsterkotter, M.4
Mewes, H.W.5
Schmeitzl, C.6
-
69
-
-
78751621346
-
Genomic evidence of repeat-induced point mutation (RIP) in filamentous ascomycetes
-
Clutterbuck AJ. Genomic evidence of repeat-induced point mutation (RIP) in filamentous ascomycetes. Fungal Genet Biol. 2011;48(3):306-26.
-
(2011)
Fungal Genet Biol.
, vol.48
, Issue.3
, pp. 306-326
-
-
Clutterbuck, A.J.1
-
70
-
-
84937722225
-
-
Accessed 01 Aug 2014.
-
MIAME/Plant Compliant Gene Expression Resources for Plants and Plant Pathogens. 2014. http://www.plexdb.org/. Accessed 01 Aug 2014.
-
(2014)
-
-
-
71
-
-
84937698483
-
-
Accessed 01 Jan 2015.
-
King R. 2015. https://rrescloud.rothamsted.ac.uk/public.php?service= files&t=cd70482248d1f0230d3cf6346662f663. Accessed 01 Jan 2015.
-
(2015)
-
-
King, R.1
-
72
-
-
0141451885
-
The Fusarium graminearum MAP1 gene is essential for pathogenicity and development of perithecia
-
Urban M, Mott E, Farley T, Hammond-Kosack K. The Fusarium graminearum MAP1 gene is essential for pathogenicity and development of perithecia. Mol Plant Pathol. 2003;4(5):347-59.
-
(2003)
Mol Plant Pathol.
, vol.4
, Issue.5
, pp. 347-359
-
-
Urban, M.1
Mott, E.2
Farley, T.3
Hammond-Kosack, K.4
-
73
-
-
0002594984
-
A rapid DNA isolation procedure for small quantities of fresh leaf tissue
-
Doyle J. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 1987;19:11-5.
-
(1987)
Phytochem Bull.
, vol.19
, pp. 11-15
-
-
Doyle, J.1
-
74
-
-
55549089660
-
Accurate whole human genome sequencing using reversible terminator chemistry
-
Bentley DR, Balasubramanian S, Swerdlow HP, Smith GP, Milton J, Brown CG, et al. Accurate whole human genome sequencing using reversible terminator chemistry. Nature. 2008;456(7218):53-9.
-
(2008)
Nature.
, vol.456
, Issue.7218
, pp. 53-59
-
-
Bentley, D.R.1
Balasubramanian, S.2
Swerdlow, H.P.3
Smith, G.P.4
Milton, J.5
Brown, C.G.6
-
75
-
-
84937698993
-
-
MIPS version FG3.3. Accessed 15 Jul 2014.
-
Güldener U. MIPS version FG3.3. 2011. ftp://ftpmips.gsf.de/fungi/Fusarium/ F_graminearum_PH1_v32/p3_p13839_Fus_grami_v32.scaf. Accessed 15 Jul 2014.
-
(2011)
-
-
Güldener, U.1
-
76
-
-
84875578097
-
Using Tablet for visual exploration of second-generation sequencing data
-
Milne I, Stephen G, Bayer M, Cock PJ, Pritchard L, Cardle L, et al. Using Tablet for visual exploration of second-generation sequencing data. Brief Bioinform. 2013;14(2):193-202.
-
(2013)
Brief Bioinform.
, vol.14
, Issue.2
, pp. 193-202
-
-
Milne, I.1
Stephen, G.2
Bayer, M.3
Cock, P.J.4
Pritchard, L.5
Cardle, L.6
-
77
-
-
84860153513
-
Using and understanding RepeatMasker
-
Tempel S. Using and understanding RepeatMasker. Methods Mol Biol. 2012;859:29-51.
-
(2012)
Methods Mol Biol.
, vol.859
, pp. 29-51
-
-
Tempel, S.1
-
78
-
-
33748653762
-
Automatic annotation of eukaryotic genes, pseudogenes and promoters
-
S10
-
Solovyev V, Kosarev P, Seledsov I, Vorobyev D. Automatic annotation of eukaryotic genes, pseudogenes and promoters. Genome Biol. 2006;7 Suppl 1:S10 1-12.
-
(2006)
Genome Biol.
, vol.7
, pp. 1-12
-
-
Solovyev, V.1
Kosarev, P.2
Seledsov, I.3
Vorobyev, D.4
-
79
-
-
33645161645
-
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
-
Stanke M, Schoffmann O, Morgenstern B, Waack S. Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources. BMC Bioinformatics. 2006;7:62.
-
(2006)
BMC Bioinformatics.
, vol.7
, pp. 62
-
-
Stanke, M.1
Schoffmann, O.2
Morgenstern, B.3
Waack, S.4
-
80
-
-
0032519353
-
GeneMark.hmm: new solutions for gene finding
-
Lukashin AV, Borodovsky M. GeneMark.hmm: new solutions for gene finding. Nucleic Acids Res. 1998;26(4):1107-15.
-
(1998)
Nucleic Acids Res.
, vol.26
, Issue.4
, pp. 1107-1115
-
-
Lukashin, A.V.1
Borodovsky, M.2
-
81
-
-
2942544417
-
Gene finding in novel genomes
-
Korf I. Gene finding in novel genomes. BMC Bioinformatics. 2004;5:59.
-
(2004)
BMC Bioinformatics.
, vol.5
, pp. 59
-
-
Korf, I.1
-
82
-
-
0030854739
-
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
-
Lowe TM, Eddy SR. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 1997;25(5):955-64.
-
(1997)
Nucleic Acids Res.
, vol.25
, Issue.5
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
83
-
-
84890037468
-
Infernal 1.1: 100-fold faster RNA homology searches
-
Nawrocki EP, Eddy SR. Infernal 1.1: 100-fold faster RNA homology searches. Bioinformatics. 2013;29(22):2933-5.
-
(2013)
Bioinformatics.
, vol.29
, Issue.22
, pp. 2933-2935
-
-
Nawrocki, E.P.1
Eddy, S.R.2
-
84
-
-
84937679153
-
-
Accessed 24 Aug 2014.
-
Softberry. 2015. www.SoftBerry.com. Accessed 24 Aug 2014.
-
(2015)
-
-
-
85
-
-
34547560275
-
WoLF PSORT: protein localization predictor
-
Horton P, Park KJ, Obayashi T, Fujita N, Harada H, Adams-Collier CJ, et al. WoLF PSORT: protein localization predictor. Nucleic Acids Res. 2007;35(Web Server issue):W585-7.
-
(2007)
Nucleic Acids Res.
, vol.35
, Issue.WEB SERVER ISSUE
, pp. W585-W587
-
-
Horton, P.1
Park, K.J.2
Obayashi, T.3
Fujita, N.4
Harada, H.5
Adams-Collier, C.J.6
-
86
-
-
0346245905
-
Glycosylphosphatidylinositol lipid anchoring of plant proteins Sensitive prediction from sequence- and genome-wide studies for Arabidopsis and rice
-
Eisenhaber B, Wildpaner M, Schultz CJ, Borner GH, Dupree P, Eisenhaber F. Glycosylphosphatidylinositol lipid anchoring of plant proteins. Sensitive prediction from sequence- and genome-wide studies for Arabidopsis and rice. Plant Physiol. 2003;133(4):1691-701.
-
(2003)
Plant Physiol.
, vol.133
, Issue.4
, pp. 1691-1701
-
-
Eisenhaber, B.1
Wildpaner, M.2
Schultz, C.J.3
Borner, G.H.4
Dupree, P.5
Eisenhaber, F.6
-
87
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009;25(14):1754-60.
-
(2009)
Bioinformatics.
, vol.25
, Issue.14
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
88
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009;25(16):2078-9.
-
(2009)
Bioinformatics.
, vol.25
, Issue.16
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
|