메뉴 건너뛰기




Volumn 133, Issue 4, 2003, Pages 1691-1701

Glycosylphosphatidylinositol Lipid Anchoring of Plant Proteins. Sensitive Prediction from Sequence- and Genome-Wide Studies for Arabidopsis and Rice

Author keywords

[No Author keywords available]

Indexed keywords

CROPS; FUNGI; GENES; LIPIDS; PHYSIOLOGY; PROTEINS;

EID: 0346245905     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.103.023580     Document Type: Article
Times cited : (179)

References (51)
  • 1
    • 0027474991 scopus 로고
    • Left-handed polyproline II helices commonly occur in globular proteins
    • Adzhubei AA, Sternberg MJE (1993) Left-handed polyproline II helices commonly occur in globular proteins. J Mol Biol 229: 472-493
    • (1993) J Mol Biol , vol.229 , pp. 472-493
    • Adzhubei, A.A.1    Sternberg, M.J.E.2
  • 3
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815
    • (2000) Nature , vol.408 , pp. 796-815
  • 4
    • 0033957834 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
    • Bairoch A, Apweiler R (2000) The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res 28: 45-48
    • (2000) Nucleic Acids Res , vol.28 , pp. 45-48
    • Bairoch, A.1    Apweiler, R.2
  • 6
    • 0035983610 scopus 로고    scopus 로고
    • Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis: A genomic analysis
    • Borner GH, Sherrier DJ, Stevens TJ, Arkin IT, Dupree P (2002) Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis: a genomic analysis. Plant Physiol 129: 486-499
    • (2002) Plant Physiol , vol.129 , pp. 486-499
    • Borner, G.H.1    Sherrier, D.J.2    Stevens, T.J.3    Arkin, I.T.4    Dupree, P.5
  • 7
    • 0037783246 scopus 로고    scopus 로고
    • Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis: A proteomic and genomic analysis
    • Borner GHH, Lilley KS, Stevens TJ, Dupree P (2003) Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis: a proteomic and genomic analysis. Plant Physiol 132: 568-577
    • (2003) Plant Physiol , vol.132 , pp. 568-577
    • Borner, G.H.H.1    Lilley, K.S.2    Stevens, T.J.3    Dupree, P.4
  • 8
    • 0030032441 scopus 로고    scopus 로고
    • Residues in Torpedo californica acetylcholinesterase necessary for processing to a glycosyl phophatidylinositol-anchored form
    • Bucht G, Hjalmarsson K (1996) Residues in Torpedo californica acetylcholinesterase necessary for processing to a glycosyl phophatidylinositol- anchored form. Biochim Biophys Acta 1292: 223-232
    • (1996) Biochim Biophys Acta , vol.1292 , pp. 223-232
    • Bucht, G.1    Hjalmarsson, K.2
  • 9
    • 0024441847 scopus 로고
    • The procyclic acidic repetitive proteins of Trypanosoma brucei
    • Clayton CE, Mowatt MR (1989) The procyclic acidic repetitive proteins of Trypanosoma brucei. J Biol Chem 264: 15088-15093
    • (1989) J Biol Chem , vol.264 , pp. 15088-15093
    • Clayton, C.E.1    Mowatt, M.R.2
  • 10
    • 0035958951 scopus 로고    scopus 로고
    • Addition of a glycophosphatidylinositol to acetylcholinesterase: Processing, degradation, and secretion
    • Coussen F, Ayon A, Le Goff A, Leroy J, Massoulie J, Bon S (2001) Addition of a glycophosphatidylinositol to acetylcholinesterase: processing, degradation, and secretion. J Biol Chem 276: 27881-27892
    • (2001) J Biol Chem , vol.276 , pp. 27881-27892
    • Coussen, F.1    Ayon, A.2    Le Goff, A.3    Leroy, J.4    Massoulie, J.5    Bon, S.6
  • 12
    • 0032409445 scopus 로고    scopus 로고
    • Sequence properties of GPI-anchored proteins near the omega-site: Constraints for the polypeptide binding site of the putative transamidase
    • Eisenhaber B, Bork P, Eisenhaber F (1998) Sequence properties of GPI-anchored proteins near the omega-site: constraints for the polypeptide binding site of the putative transamidase. Protein Eng 11: 1155-1161
    • (1998) Protein Eng , vol.11 , pp. 1155-1161
    • Eisenhaber, B.1    Bork, P.2    Eisenhaber, F.3
  • 13
    • 0033600935 scopus 로고    scopus 로고
    • Prediction of potential GPI-modification sites in proprotein sequences
    • Eisenhaber B, Bork P, Eisenhaber F (1999) Prediction of potential GPI-modification sites in proprotein sequences. J Mol Biol 292: 741-758
    • (1999) J Mol Biol , vol.292 , pp. 741-758
    • Eisenhaber, B.1    Bork, P.2    Eisenhaber, F.3
  • 14
    • 0035049164 scopus 로고    scopus 로고
    • Post-translational GPI lipid anchor modification of proteins in kingdoms of life: Analysis of protein sequence data from complete genomes
    • Eisenhaber B, Bork P, Eisenhaber F (2001) Post-translational GPI lipid anchor modification of proteins in kingdoms of life: analysis of protein sequence data from complete genomes. Protein Eng 14: 17-25
    • (2001) Protein Eng , vol.14 , pp. 17-25
    • Eisenhaber, B.1    Bork, P.2    Eisenhaber, F.3
  • 16
    • 0037387522 scopus 로고    scopus 로고
    • Enzymes and auxiliary factors for GPI lipid anchor biosynthesis and posttranslational transfer to proteins
    • Eisenhaber B, Maurer-Stroh S, Novatchkova M, Schneider G, Eisenhaber F (2003) Enzymes and auxiliary factors for GPI lipid anchor biosynthesis and posttranslational transfer to proteins. Bioessays 25: 367-385
    • (2003) Bioessays , vol.25 , pp. 367-385
    • Eisenhaber, B.1    Maurer-Stroh, S.2    Novatchkova, M.3    Schneider, G.4    Eisenhaber, F.5
  • 17
    • 0032820595 scopus 로고    scopus 로고
    • The structure, biosynthesis and functions of glycosylphosphatidylinositol anchors, and the contributions of trypanosome research
    • Ferguson MA (1999) The structure, biosynthesis and functions of glycosylphosphatidylinositol anchors, and the contributions of trypanosome research. J Cell Sci 112: 2799-2809
    • (1999) J Cell Sci , vol.112 , pp. 2799-2809
    • Ferguson, M.A.1
  • 18
    • 0024095774 scopus 로고
    • The MRC OX-45 antigen of rat leukocytes and endothelium is in a subset of the immunoglobulin superfamily with CD2, LF-3 and carcinoembryonic antigens
    • Killeen N, Moessner R, Arvieux J, Willis A, Williams AF (1988) The MRC OX-45 antigen of rat leukocytes and endothelium is in a subset of the immunoglobulin superfamily with CD2, LF-3 and carcinoembryonic antigens. EMBO J 7: 3087-3091
    • (1988) EMBO J , vol.7 , pp. 3087-3091
    • Killeen, N.1    Moessner, R.2    Arvieux, J.3    Willis, A.4    Williams, A.F.5
  • 19
    • 0033637430 scopus 로고    scopus 로고
    • Dissecting and manipulating the pathway for glycosylphos- phatidylinositol-anchor biosynthesis
    • Kinoshita T, Inoue N (2000) Dissecting and manipulating the pathway for glycosylphos-phatidylinositol-anchor biosynthesis. Curr Opin Chem Biol 4: 632-638
    • (2000) Curr Opin Chem Biol , vol.4 , pp. 632-638
    • Kinoshita, T.1    Inoue, N.2
  • 20
    • 0030829510 scopus 로고    scopus 로고
    • Evidence for the presence of GPI-anchored PM-NR in leaves of Beta vulgaris and for PN-NR in barley leaves
    • Kuntze M, Riedel J, Lange U, Hurwitz R, Tischner R (1997) Evidence for the presence of GPI-anchored PM-NR in leaves of Beta vulgaris and for PN-NR in barley leaves. Plant Physiol Biochem 35: 507-512
    • (1997) Plant Physiol Biochem , vol.35 , pp. 507-512
    • Kuntze, M.1    Riedel, J.2    Lange, U.3    Hurwitz, R.4    Tischner, R.5
  • 21
    • 0036290648 scopus 로고    scopus 로고
    • N-terminal N-myristoylation of proteins: Prediction of substrate proteins from amino acid sequence
    • Maurer-Stroh S, Eisenhaber B, Eisenhaber F (2002a) N-terminal N-myristoylation of proteins: prediction of substrate proteins from amino acid sequence. J Mol Biol 317: 541-557
    • (2002) J Mol Biol , vol.317 , pp. 541-557
    • Maurer-Stroh, S.1    Eisenhaber, B.2    Eisenhaber, F.3
  • 22
    • 0036295384 scopus 로고    scopus 로고
    • N-terminal N-myristoylation of proteins: Refinement of the sequence motif and its taxon-specific differences
    • Maurer-Stroh S, Eisenhaber B, Eisenhaber F (2002b) N-terminal N-myristoylation of proteins: refinement of the sequence motif and its taxon-specific differences. J Mol Biol 317: 523-540
    • (2002) J Mol Biol , vol.317 , pp. 523-540
    • Maurer-Stroh, S.1    Eisenhaber, B.2    Eisenhaber, F.3
  • 23
    • 0025709722 scopus 로고
    • Primary structure of human placental 5′-nucleotidase and identification of the glycolipid anchor in the mature form
    • Misumi Y, Ogata S, Ohkubo K, Hirose S, Ikehara Y (1990) Primary structure of human placental 5′-nucleotidase and identification of the glycolipid anchor in the mature form. FEBS Lett 191: 563-569
    • (1990) FEBS Lett , vol.191 , pp. 563-569
    • Misumi, Y.1    Ogata, S.2    Ohkubo, K.3    Hirose, S.4    Ikehara, Y.5
  • 24
    • 0028327126 scopus 로고
    • Requirements for glycosylphosphatidylinositol attachment are similar but not identical in mammalian cells and parasitic Protozoa
    • Moran P, Caras IW (1994) Requirements for glycosylphosphatidylinositol attachment are similar but not identical in mammalian cells and parasitic Protozoa. J Cell Biol 125: 333-343
    • (1994) J Cell Biol , vol.125 , pp. 333-343
    • Moran, P.1    Caras, I.W.2
  • 25
    • 0026033050 scopus 로고
    • Glycophospholipid membrane anchor attachment
    • Moran P, Raab H, Kohr WJ, Caras IW (1991) Glycophospholipid membrane anchor attachment. J Biol Chem 266: 1250-1257
    • (1991) J Biol Chem , vol.266 , pp. 1250-1257
    • Moran, P.1    Raab, H.2    Kohr, W.J.3    Caras, I.W.4
  • 26
    • 0029984842 scopus 로고    scopus 로고
    • Evidence for a glycosylinositolphospholipid-anchored alkaline phosphatase in the aquatic plant Spirodela oligorrhiza
    • Monta N, Nakazato H, Okuyama H, Kim Y, Thompson GA Jr (1996) Evidence for a glycosylinositolphospholipid-anchored alkaline phosphatase in the aquatic plant Spirodela oligorrhiza. Biochim Biophys Acta 1290: 53-62
    • (1996) Biochim Biophys Acta , vol.1290 , pp. 53-62
    • Monta, N.1    Nakazato, H.2    Okuyama, H.3    Kim, Y.4    Thompson Jr., G.A.5
  • 28
    • 0033044637 scopus 로고    scopus 로고
    • Machine learning approaches for the prediction of signal peptides and other protein sorting signals
    • Nielsen H, Brunak S, von Heijne G (1999) Machine learning approaches for the prediction of signal peptides and other protein sorting signals. Protein Eng 12: 3-9
    • (1999) Protein Eng , vol.12 , pp. 3-9
    • Nielsen, H.1    Brunak, S.2    Von Heijne, G.3
  • 29
    • 0031240609 scopus 로고    scopus 로고
    • A neural network method for identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
    • Nielsen H, Engelbrecht J, Brunak S, von Heijne G (1997) A neural network method for identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Int J Neural Syst 8: 581-599
    • (1997) Int J Neural Syst , vol.8 , pp. 581-599
    • Nielsen, H.1    Engelbrecht, J.2    Brunak, S.3    Von Heijne, G.4
  • 30
    • 0034816542 scopus 로고    scopus 로고
    • Cloning and characterization of cDNA of the GPI-anchored purple acid phosphatase and its root tissue distribution in Spirodela oligorrhiza
    • Nishikoori M, Washio K, Hase A, Morita N, Okuyama H (2001) Cloning and characterization of cDNA of the GPI-anchored purple acid phosphatase and its root tissue distribution in Spirodela oligorrhiza. Physiol Plant 113: 241-248
    • (2001) Physiol Plant , vol.113 , pp. 241-248
    • Nishikoori, M.1    Washio, K.2    Hase, A.3    Morita, N.4    Okuyama, H.5
  • 31
    • 0026057813 scopus 로고
    • Determinants for glycophospholipid anchoring of the Saccharomyces cerevisae GAS1 protein to the plasma membrane
    • Nuoffer C, Jenö P, Conzelmann A, Riezmann H (1991) Determinants for glycophospholipid anchoring of the Saccharomyces cerevisae GAS1 protein to the plasma membrane. Mol Cell Biol 11: 27-37
    • (1991) Mol Cell Biol , vol.11 , pp. 27-37
    • Nuoffer, C.1    Jenö, P.2    Conzelmann, A.3    Riezmann, H.4
  • 32
    • 0035421238 scopus 로고    scopus 로고
    • PIG-S and PIG-T, essential for GPI anchor attachment to proteins, form a complex with GAA1 and GPI8
    • Ohishi K, Inoue N, Kinoshita T (2001) PIG-S and PIG-T, essential for GPI anchor attachment to proteins, form a complex with GAA1 and GPI8. EMBO J 20: 4088-4098
    • (2001) EMBO J , vol.20 , pp. 4088-4098
    • Ohishi, K.1    Inoue, N.2    Kinoshita, T.3
  • 33
    • 0033434090 scopus 로고    scopus 로고
    • Structure of the glycosylphosphatidy, inositol anchor of an arabinogalactan protein from Pyrus communis suspension cultured cells
    • Oxley D, Bacic A (1999) Structure of the glycosylphosphatidy, inositol anchor of an arabinogalactan protein from Pyrus communis suspension cultured cells. Proc Natl Acad Sci USA 96: 14246-14251
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 14246-14251
    • Oxley, D.1    Bacic, A.2
  • 34
    • 0035336735 scopus 로고    scopus 로고
    • COBRA encodes a putative GPI-anchored protein, which is polarly localized and necessary for oriented cell expansion in Arabidopsis
    • Schindelman G, Morikami A, Jung J, Baskin TI, Carpita NC, Derbyshire P, McCann MC, Benfey PN (2001) COBRA encodes a putative GPI-anchored protein, which is polarly localized and necessary for oriented cell expansion in Arabidopsis. Genes Dev 15: 1115-1127
    • (2001) Genes Dev , vol.15 , pp. 1115-1127
    • Schindelman, G.1    Morikami, A.2    Jung, J.3    Baskin, T.I.4    Carpita, N.C.5    Derbyshire, P.6    McCann, M.C.7    Benfey, P.N.8
  • 35
    • 0031740880 scopus 로고    scopus 로고
    • The GPI-anchors on arabinogalactan-proteins: Implication for signalling in plants
    • Schultz CJ, Gilson P, Oxley D, Youl J, Bacic A (1998) The GPI-anchors on arabinogalactan-proteins: implication for signalling in plants. Trends Plant Sci 3: 426-431
    • (1998) Trends Plant Sci , vol.3 , pp. 426-431
    • Schultz, C.J.1    Gilson, P.2    Oxley, D.3    Youl, J.4    Bacic, A.5
  • 36
    • 0033793004 scopus 로고    scopus 로고
    • The classical arabinogalactan protein gene family of Arabidopsis
    • Schultz CJ, Johnson KL, Currie G, Bacic A (2000) The classical arabinogalactan protein gene family of Arabidopsis. Plant Cell 12: 1751-1768
    • (2000) Plant Cell , vol.12 , pp. 1751-1768
    • Schultz, C.J.1    Johnson, K.L.2    Currie, G.3    Bacic, A.4
  • 37
    • 0037008178 scopus 로고    scopus 로고
    • Using genomic resources to guide research directions: The arabinogalactan protein gene family as a test case
    • Schultz CJ, Rumsewicz MP, Johnson KL, Jones BJ, Gaspar YM, Bacic A (2002) Using genomic resources to guide research directions: the arabinogalactan protein gene family as a test case. Plant Physiol 129: 1448-1463
    • (2002) Plant Physiol , vol.129 , pp. 1448-1463
    • Schultz, C.J.1    Rumsewicz, M.P.2    Johnson, K.L.3    Jones, B.J.4    Gaspar, Y.M.5    Bacic, A.6
  • 38
    • 0035984061 scopus 로고    scopus 로고
    • The Arabidopsis SKU5 gene encodes an extracellular glycosyl phosphatidylinositol-anchored glycoprotein involved in directional root growth
    • Sedbrook JC, Carroll KL, Hung KF, Masson PH, Somerville CR (2002) The Arabidopsis SKU5 gene encodes an extracellular glycosyl phosphatidylinositol- anchored glycoprotein involved in directional root growth. Plant Cell 14: 1635-1648
    • (2002) Plant Cell , vol.14 , pp. 1635-1648
    • Sedbrook, J.C.1    Carroll, K.L.2    Hung, K.F.3    Masson, P.H.4    Somerville, C.R.5
  • 39
    • 13044289297 scopus 로고    scopus 로고
    • Glycosylphosphatidylinositol-anchored cell-surface proteins from Arabidopsis
    • Sherrier DJ, Prime TA, Dupree P (1999) Glycosylphosphatidylinositol- anchored cell-surface proteins from Arabidopsis. Electrophoresis 20: 2027-2035
    • (1999) Electrophoresis , vol.20 , pp. 2027-2035
    • Sherrier, D.J.1    Prime, T.A.2    Dupree, P.3
  • 40
    • 0025091084 scopus 로고
    • Identification of glycoinositol phospholipid linked and truncated forms of the scrapie prion protein
    • Stahl N, Baldwin MA, Burlingame AL, Prusiner SB (1990) Identification of glycoinositol phospholipid linked and truncated forms of the scrapie prion protein. Biochemistry 29: 8879-8884
    • (1990) Biochemistry , vol.29 , pp. 8879-8884
    • Stahl, N.1    Baldwin, M.A.2    Burlingame, A.L.3    Prusiner, S.B.4
  • 41
    • 0029103458 scopus 로고
    • Glycosyl-phosphatidylinositol-anchored proteins exist in the plasma membrane of Chlorella saccharophila (Krüger) Nadson: Plasma-membrane-bound nitrate reductase as an example
    • Stöhr C, Schuler F, Tischner R (1995) Glycosyl-phosphatidylinositol- anchored proteins exist in the plasma membrane of Chlorella saccharophila (Krüger) Nadson: plasma-membrane-bound nitrate reductase as an example. Planta 196: 284-287
    • (1995) Planta , vol.196 , pp. 284-287
    • Stöhr, C.1    Schuler, F.2    Tischner, R.3
  • 42
    • 0027495763 scopus 로고
    • Determination of carboxy-terminal residue and disulphide bonds of MACIF (CD59), a glycosyl-phosphatidylinositol-anchored membrane protein
    • Sugita Y, Nakano Y, Oda E, Noda K, Tobe T, Miura NH, Tomita M (1993) Determination of carboxy-terminal residue and disulphide bonds of MACIF (CD59), a glycosyl-phosphatidylinositol-anchored membrane protein. J Biochem 114: 473-477
    • (1993) J Biochem , vol.114 , pp. 473-477
    • Sugita, Y.1    Nakano, Y.2    Oda, E.3    Noda, K.4    Tobe, T.5    Miura, N.H.6    Tomita, M.7
  • 44
    • 0030890351 scopus 로고    scopus 로고
    • Detection of glycosylphosphatidylinositol-anchored proteins on the surface of Nicotiana tabacum protoplasts
    • Takos AM, Dry IB, Soole KL (1997) Detection of glycosylphosphatidylinositol-anchored proteins on the surface of Nicotiana tabacum protoplasts. FEBS Lett 405: 1-4
    • (1997) FEBS Lett , vol.405 , pp. 1-4
    • Takos, A.M.1    Dry, I.B.2    Soole, K.L.3
  • 45
    • 0034002653 scopus 로고    scopus 로고
    • Glycosyl-phosphatidylinositol-anchor addition signals are processed in Nicotiana tabacum
    • Takos AM, Dry IB, Soole KL (2000) Glycosyl-phosphatidylinositol-anchor addition signals are processed in Nicotiana tabacum. Plant J 21: 43-52
    • (2000) Plant J , vol.21 , pp. 43-52
    • Takos, A.M.1    Dry, I.B.2    Soole, K.L.3
  • 46
    • 0028981209 scopus 로고
    • How glycosylphosphatidylinositol-anchored membrane proteins are made
    • Udenfriend S, Kodukula K (1995a) How glycosylphosphatidylinositol- anchored membrane proteins are made. Annu Rev Biochem 64: 563-591
    • (1995) Annu Rev Biochem , vol.64 , pp. 563-591
    • Udenfriend, S.1    Kodukula, K.2
  • 47
    • 0029003340 scopus 로고
    • Prediction of omega site in nascent precursor of glycosylphosphatidylinositol protein
    • Udenfriend S, Kodukula K (1995b) Prediction of omega site in nascent precursor of glycosylphosphatidylinositol protein. Methods Enzymol 250: 571-582
    • (1995) Methods Enzymol , vol.250 , pp. 571-582
    • Udenfriend, S.1    Kodukula, K.2
  • 48
    • 0027514504 scopus 로고
    • Evolutionary conservation of genomic sequences related to the GGP1 gene encoding a yeast GPI-anchored glycoprotein
    • Vai M, Lacanà E, Gatti E, Breviario D, Popolo L, Alberghina L (1993) Evolutionary conservation of genomic sequences related to the GGP1 gene encoding a yeast GPI-anchored glycoprotein. Curr Genet 23: 19-21
    • (1993) Curr Genet , vol.23 , pp. 19-21
    • Vai, M.1    Lacanà, E.2    Gatti, E.3    Breviario, D.4    Popolo, L.5    Alberghina, L.6
  • 49
    • 0028867956 scopus 로고
    • Preferred sites of glycosylphosphatidylinositol modification in folate receptors and constraints in the primary structure of the hydrophobic portion of the signal
    • Yan W, Ratnam M (1995) Preferred sites of glycosylphosphatidylinositol modification in folate receptors and constraints in the primary structure of the hydrophobic portion of the signal. Biochemistry 34: 14594-14600
    • (1995) Biochemistry , vol.34 , pp. 14594-14600
    • Yan, W.1    Ratnam, M.2
  • 50
    • 0032493454 scopus 로고    scopus 로고
    • Arabinogalactan-proteins from Nicotiana alata und Pyrus communis contain glycosylphosphatidylinositol membrane anchors
    • Youl JJ, Bacic A, Oxley D (1998) Arabinogalactan-proteins from Nicotiana alata und Pyrus communis contain glycosylphosphatidylinositol membrane anchors. Proc Natl Acad Sci USA 95: 7921-7926
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 7921-7926
    • Youl, J.J.1    Bacic, A.2    Oxley, D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.