-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F. et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
-
2
-
-
0034566410
-
Small subunit ribosomal RNA modeling using stochastic context-free grammars
-
Brown, M.P. (2000) Small subunit ribosomal RNA modeling using stochastic context-free grammars. Proc. Int. Conf. Intell. Syst. Mol. Biol., 8, 57-66.
-
(2000)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.8
, pp. 57-66
-
-
Brown, M.P.1
-
3
-
-
84874266637
-
Rfam 11.0: 10 years of RNA families
-
Burge, S.W. et al. (2013) Rfam 11.0: 10 years of RNA families. Nucleic Acids Res., 41, D226-D232.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Burge, S.W.1
-
4
-
-
58149200948
-
The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis
-
Cole, J.R. et al. (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res., 37, D141-D145.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Cole, J.R.1
-
6
-
-
84890085803
-
-
1 July 2013, date last accessed
-
Eddy, S.R. (2003) The HMMER2 user's guide. http://hmmer.janelia.org/(1 July 2013, date last accessed).
-
(2003)
The HMMER2 User's Guide
-
-
Eddy . S, R.1
-
7
-
-
44949157290
-
A probabilistic model of local sequence alignment that simplifies statistical significance estimation
-
Eddy, S.R. (2008) A probabilistic model of local sequence alignment that simplifies statistical significance estimation. PLoS Comput. Biol., 4, e1000069.
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Eddy . S, R.1
-
8
-
-
80055082271
-
Accelerated profile HMM searches
-
Eddy, S.R. (2011) Accelerated profile HMM searches. PLoS Comp. Biol., 7, e1002195.
-
(2011)
PLoS Comp. Biol.
, vol.7
-
-
Eddy, S.R.1
-
9
-
-
33845986334
-
Exploring genomic dark matter: A critical assessment of the performance of homology search methods on noncoding RNA
-
Freyhult, E.K. et al. (2007) Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA. Genome Res., 17, 117-125.
-
(2007)
Genome Res.
, vol.17
, pp. 117-125
-
-
Freyhult, E.K.1
-
10
-
-
0037252684
-
Rfam: An RNA family database
-
Griffiths-Jones, S. et al. (2003) Rfam: an RNA family database. Nucleic Acids Res., 31, 439-441.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 439-441
-
-
Griffiths-Jones, S.1
-
11
-
-
0031721094
-
Homology detection via family pairwise search
-
Grundy, W.N. (1998) Homology detection via family pairwise search. J. Comput. Biol., 5, 479-491.
-
(1998)
J. Comput. Biol.
, vol.5
, pp. 479-491
-
-
Grundy, W.N.1
-
12
-
-
65549118801
-
Local RNA structure alignment with incomplete sequence
-
Kolbe, D.L. and Eddy, S.R. (2009) Local RNA structure alignment with incomplete sequence. Bioinformatics, 25, 1236-1243.
-
(2009)
Bioinformatics
, vol.25
, pp. 1236-1243
-
-
Kolbe, D.L.1
Eddy, S.R.2
-
14
-
-
65549111754
-
Infernal 1.0: Inference of RNA alignments
-
Nawrocki, E.P. et al. (2009) Infernal 1.0: inference of RNA alignments. Bioinformatics, 25, 1335-1337.
-
(2009)
Bioinformatics
, vol.25
, pp. 1335-1337
-
-
Nawrocki, E.P.1
-
15
-
-
13444287763
-
Exploiting conserved structure for faster annotation of non-coding RNAs without loss of accuracy
-
Weinberg, Z. and Ruzzo, W.L. (2004) Exploiting conserved structure for faster annotation of non-coding RNAs without loss of accuracy. Bioinformatics, 20 (Suppl. 1), I334-I341.
-
(2004)
Bioinformatics
, vol.20
, Issue.SUPPL. 1
-
-
Weinberg, Z.1
Ruzzo, W.L.2
-
16
-
-
30344443658
-
Sequence-based heuristics for faster annotation of non-coding RNA families
-
Weinberg, Z. and Ruzzo, W.L. (2006) Sequence-based heuristics for faster annotation of non-coding RNA families. Bioinformatics, 22, 35-39.
-
(2006)
Bioinformatics
, vol.22
, pp. 35-39
-
-
Weinberg, Z.1
Ruzzo, W.L.2
|