메뉴 건너뛰기




Volumn 7, Issue 10, 2011, Pages

A phenome-based functional analysis of transcription factors in the cereal head blight fungus, fusarium graminearum

Author keywords

[No Author keywords available]

Indexed keywords

FUNGICIDE; REACTIVE OXYGEN METABOLITE; TRANSCRIPTION FACTOR;

EID: 80055103105     PISSN: 15537366     EISSN: 15537374     Source Type: Journal    
DOI: 10.1371/journal.ppat.1002310     Document Type: Article
Times cited : (263)

References (49)
  • 1
    • 49749136166 scopus 로고    scopus 로고
    • Transcription factors in fungi
    • Shelest E, (2008) Transcription factors in fungi. FEMS Microbiol Lett 286: 145-151.
    • (2008) FEMS Microbiol Lett , vol.286 , pp. 145-151
    • Shelest, E.1
  • 4
    • 34548669353 scopus 로고    scopus 로고
    • The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization
    • Cuomo CA, Guldener U, Xu J-R, Trail F, Turgeon BG, et al. (2007) The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science 317: 1400-1402.
    • (2007) Science , vol.317 , pp. 1400-1402
    • Cuomo, C.A.1    Guldener, U.2    Xu, J.-R.3    Trail, F.4    Turgeon, B.G.5
  • 5
    • 34948868269 scopus 로고    scopus 로고
    • Gene expression shifts during perithecium development in Gibberella zeae (anamorph Fusarium graminearum), with particular emphasis on ion transport proteins
    • Hallen HE, Huebner M, Shiu S-H, Güldener U, Trail F, (2007) Gene expression shifts during perithecium development in Gibberella zeae (anamorph Fusarium graminearum), with particular emphasis on ion transport proteins. Fungal Genet Biol 44: 1146-1156.
    • (2007) Fungal Genet Biol , vol.44 , pp. 1146-1156
    • Hallen, H.E.1    Huebner, M.2    Shiu, S.-H.3    Güldener, U.4    Trail, F.5
  • 6
    • 41449090419 scopus 로고    scopus 로고
    • The L-type calcium ion channel Cch1 affects ascospore discharge and mycelial growth in the filamentous fungus Gibberella zeae (anamorph Fusarium graminearum)
    • Hallen HE, Trail F, (2008) The L-type calcium ion channel Cch1 affects ascospore discharge and mycelial growth in the filamentous fungus Gibberella zeae (anamorph Fusarium graminearum). Eukaryot Cell 7: 415-424.
    • (2008) Eukaryot Cell , vol.7 , pp. 415-424
    • Hallen, H.E.1    Trail, F.2
  • 7
    • 80051591770 scopus 로고    scopus 로고
    • The transcriptome of Fusarium graminearum during the infection of wheat
    • Lysøe E, Seong K-Y, Kistler HC, (2011) The transcriptome of Fusarium graminearum during the infection of wheat. Mol Plant Microbe Interact 24: 995-1000.
    • (2011) Mol Plant Microbe Interact , vol.24 , pp. 995-1000
    • Lysøe, E.1    Seong, K.-Y.2    Kistler, H.C.3
  • 9
  • 10
    • 72949093855 scopus 로고    scopus 로고
    • Novel genes of Fusarium graminearum that negatively regulate deoxynivalenol production and virulence
    • Gardiner DM, Kazan K, Manners JM, (2009) Novel genes of Fusarium graminearum that negatively regulate deoxynivalenol production and virulence. Mol Plant Microbe Interact 22: 1588-1600.
    • (2009) Mol Plant Microbe Interact , vol.22 , pp. 1588-1600
    • Gardiner, D.M.1    Kazan, K.2    Manners, J.M.3
  • 12
    • 33646153990 scopus 로고    scopus 로고
    • Development of a Fusarium graminearum Affymetrix GeneChip for profiling fungal gene expression in vitro and in planta
    • Güldener U, Seong K-Y, Boddu J, Cho S, Trail F, et al. (2006) Development of a Fusarium graminearum Affymetrix GeneChip for profiling fungal gene expression in vitro and in planta. Fungal Genet Biol 43: 316-325.
    • (2006) Fungal Genet Biol , vol.43 , pp. 316-325
    • Güldener, U.1    Seong, K.-Y.2    Boddu, J.3    Cho, S.4    Trail, F.5
  • 13
    • 41349093546 scopus 로고    scopus 로고
    • FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors
    • Park J, Park J, Jang S, Kim S, Kong S, et al. (2008) FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors. Bioinformatics 24: 1024-1025.
    • (2008) Bioinformatics , vol.24 , pp. 1024-1025
    • Park, J.1    Park, J.2    Jang, S.3    Kim, S.4    Kong, S.5
  • 14
    • 33144490289 scopus 로고    scopus 로고
    • GIP2, a putative transcription factor that regulates the aurofusarin biosynthetic gene cluster in Gibberella zeae
    • Kim J-E, Jin J, Kim H, Kim J-C, Yun S-H, et al. (2006) GIP2, a putative transcription factor that regulates the aurofusarin biosynthetic gene cluster in Gibberella zeae. Appl Environ Microbiol 72: 1645-1652.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 1645-1652
    • Kim, J.-E.1    Jin, J.2    Kim, H.3    Kim, J.-C.4    Yun, S.-H.5
  • 15
    • 64149096403 scopus 로고    scopus 로고
    • Global gene regulation by Fusarium transcription factors Tri6 and Tri10 reveals adaptations for toxin biosynthesis
    • Seong K-Y, Pasquali M, Zhou X, Song J, Hilburn K, et al. (2009) Global gene regulation by Fusarium transcription factors Tri6 and Tri10 reveals adaptations for toxin biosynthesis. Mol Microbiol 72: 354-367.
    • (2009) Mol Microbiol , vol.72 , pp. 354-367
    • Seong, K.-Y.1    Pasquali, M.2    Zhou, X.3    Song, J.4    Hilburn, K.5
  • 16
    • 27944479301 scopus 로고    scopus 로고
    • Two different polyketide synthase genes are required for synthesis of zearalenone in Gibberella zeae
    • Kim Y-T, Lee Y-R, Jin J, Han K-H, Kim H, et al. (2005) Two different polyketide synthase genes are required for synthesis of zearalenone in Gibberella zeae. Mol Microbiol 58: 1102-1113.
    • (2005) Mol Microbiol , vol.58 , pp. 1102-1113
    • Kim, Y.-T.1    Lee, Y.-R.2    Jin, J.3    Han, K.-H.4    Kim, H.5
  • 17
    • 78751627936 scopus 로고    scopus 로고
    • The pH regulatory factor Pac1 regulates Tri gene expression and trichothecene production in Fusarium graminearum
    • Merhej J, Richard-Forget F, Barreau C, (2011) The pH regulatory factor Pac1 regulates Tri gene expression and trichothecene production in Fusarium graminearum. Fungal Genet Biol 48: 275-284.
    • (2011) Fungal Genet Biol , vol.48 , pp. 275-284
    • Merhej, J.1    Richard-Forget, F.2    Barreau, C.3
  • 18
    • 0141595860 scopus 로고    scopus 로고
    • Shifting fungal reproductive mode by manipulation of mating type genes: obligatory heterothallism of Gibberella zeae
    • Lee J, Lee T, Lee Y-W, Yun S-H, Turgeon BG, (2003) Shifting fungal reproductive mode by manipulation of mating type genes: obligatory heterothallism of Gibberella zeae. Mol Microbiol 50: 145-152.
    • (2003) Mol Microbiol , vol.50 , pp. 145-152
    • Lee, J.1    Lee, T.2    Lee, Y.-W.3    Yun, S.-H.4    Turgeon, B.G.5
  • 19
    • 78650631005 scopus 로고    scopus 로고
    • The transcription factor FgStuAp influences spore development, pathogenicity, and secondary metabolism in Fusarium graminearum
    • Lysøe E, Pasquali M, Breakspear A, Kistler HC, (2011) The transcription factor FgStuAp influences spore development, pathogenicity, and secondary metabolism in Fusarium graminearum. Mol Plant Microbe Interact 24: 54-67.
    • (2011) Mol Plant Microbe Interact , vol.24 , pp. 54-67
    • Lysøe, E.1    Pasquali, M.2    Breakspear, A.3    Kistler, H.C.4
  • 20
    • 20844450604 scopus 로고    scopus 로고
    • Random insertional mutagenesis identifies genes associated with virulence in the wheat scab fungus Fusarium graminearum
    • Seong K-Y, Hou Z, Tracy M, Kistler HC, Xu J-R, (2005) Random insertional mutagenesis identifies genes associated with virulence in the wheat scab fungus Fusarium graminearum. Phytopathology 95: 744-750.
    • (2005) Phytopathology , vol.95 , pp. 744-750
    • Seong, K.-Y.1    Hou, Z.2    Tracy, M.3    Kistler, H.C.4    Xu, J.-R.5
  • 21
    • 33745700272 scopus 로고    scopus 로고
    • FSR1 is essential for virulence and female fertility in Fusarium verticillioides and F. graminearum
    • Shim W-B, Sagaram US, Choi Y-E, So J, Wilkinson HH, et al. (2006) FSR1 is essential for virulence and female fertility in Fusarium verticillioides and F. graminearum. Mol Plant Microbe Interact 19: 725-733.
    • (2006) Mol Plant Microbe Interact , vol.19 , pp. 725-733
    • Shim, W.-B.1    Sagaram, U.S.2    Choi, Y.-E.3    So, J.4    Wilkinson, H.H.5
  • 22
    • 78650638636 scopus 로고    scopus 로고
    • A novel transcriptional factor important for pathogenesis and ascosporogenesis in Fusarium graminearum
    • Wang Y, Liu W, Hou Z, Wang C, Zhou X, et al. (2011) A novel transcriptional factor important for pathogenesis and ascosporogenesis in Fusarium graminearum. Mol Plant Microbe Interact 24: 118-128.
    • (2011) Mol Plant Microbe Interact , vol.24 , pp. 118-128
    • Wang, Y.1    Liu, W.2    Hou, Z.3    Wang, C.4    Zhou, X.5
  • 23
    • 0034671865 scopus 로고    scopus 로고
    • Arabidopsis transcription factors: Genome-wide comparative analysis among eukaryotes
    • Riechmann JL, Heard J, Martin G, Reuber L, Jiang C-Z, et al. (2000) Arabidopsis transcription factors: Genome-wide comparative analysis among eukaryotes. Science 290: 2105-2110.
    • (2000) Science , vol.290 , pp. 2105-2110
    • Riechmann, J.L.1    Heard, J.2    Martin, G.3    Reuber, L.4    Jiang, C.-Z.5
  • 24
    • 79952011931 scopus 로고    scopus 로고
    • ATP citrate lyase is required for normal sexual and asexual development in Gibberella zeae
    • Son H, Lee J, Park AR, Lee Y-W, (2011) ATP citrate lyase is required for normal sexual and asexual development in Gibberella zeae. Fungal Genet Biol 48: 408-417.
    • (2011) Fungal Genet Biol , vol.48 , pp. 408-417
    • Son, H.1    Lee, J.2    Park, A.R.3    Lee, Y.-W.4
  • 25
    • 33745924142 scopus 로고    scopus 로고
    • A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors
    • Colot HV, Park G, Turner GE, Ringelberg C, Crew CM, et al. (2006) A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors. Proc Natl Acad Sci U S A 103: 10352-10357.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 10352-10357
    • Colot, H.V.1    Park, G.2    Turner, G.E.3    Ringelberg, C.4    Crew, C.M.5
  • 26
    • 38549176698 scopus 로고    scopus 로고
    • CFGP: a web-based, comparative fungal genomics platform
    • Park J, Park B, Jung K, Jang S, Yu K, et al. (2008) CFGP: a web-based, comparative fungal genomics platform. Nucleic Acids Res 36: D562-D571.
    • (2008) Nucleic Acids Res , vol.36
    • Park, J.1    Park, B.2    Jung, K.3    Jang, S.4    Yu, K.5
  • 28
    • 0035861532 scopus 로고    scopus 로고
    • Systematic genetic analysis with ordered arrays of yeast deletion mutants
    • Tong AHY, Evangelista M, Parsons AB, Xu H, Bader GD, et al. (2001) Systematic genetic analysis with ordered arrays of yeast deletion mutants. Science 294: 2364-2368.
    • (2001) Science , vol.294 , pp. 2364-2368
    • Tong, A.H.Y.1    Evangelista, M.2    Parsons, A.B.3    Xu, H.4    Bader, G.D.5
  • 29
    • 28844474433 scopus 로고    scopus 로고
    • The Arabidopsis genome: A foundation for plant research
    • Bevan M, Walsh S, (2005) The Arabidopsis genome: A foundation for plant research. Genome Res 15: 1632-1642.
    • (2005) Genome Res , vol.15 , pp. 1632-1642
    • Bevan, M.1    Walsh, S.2
  • 30
    • 12144289681 scopus 로고    scopus 로고
    • A large-scale RNAi screen in human cells identifies new components of the p53 pathway
    • Berns K, Hijmans EM, Mullenders J, Brummelkamp TR, Velds A, et al. (2004) A large-scale RNAi screen in human cells identifies new components of the p53 pathway. Nature 428: 431-437.
    • (2004) Nature , vol.428 , pp. 431-437
    • Berns, K.1    Hijmans, E.M.2    Mullenders, J.3    Brummelkamp, T.R.4    Velds, A.5
  • 31
    • 0037448528 scopus 로고    scopus 로고
    • Genome-wide RNAi analysis of Caenorhabditis elegans fat regulatory genes
    • Ashrafi K, Chang FY, Watts JL, Fraser AG, Kamath RS, et al. (2003) Genome-wide RNAi analysis of Caenorhabditis elegans fat regulatory genes. Nature 421: 268-272.
    • (2003) Nature , vol.421 , pp. 268-272
    • Ashrafi, K.1    Chang, F.Y.2    Watts, J.L.3    Fraser, A.G.4    Kamath, R.S.5
  • 32
    • 0033529707 scopus 로고    scopus 로고
    • Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis
    • Winzeler EA, Shoemaker DD, Astromoff A, Liang H, Anderson K, et al. (1999) Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285: 901-906.
    • (1999) Science , vol.285 , pp. 901-906
    • Winzeler, E.A.1    Shoemaker, D.D.2    Astromoff, A.3    Liang, H.4    Anderson, K.5
  • 33
    • 77953255163 scopus 로고    scopus 로고
    • Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe
    • Kim D-U, Hayles J, Kim D, Wood V, Park H-O, et al. (2010) Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat Biotech 28: 617-623.
    • (2010) Nat Biotech , vol.28 , pp. 617-623
    • Kim, D.-U.1    Hayles, J.2    Kim, D.3    Wood, V.4    Park, H.-O.5
  • 34
    • 34047150746 scopus 로고    scopus 로고
    • Genome-wide functional analysis of pathogenicity genes in the rice blast fungus
    • Jeon J, Park S-Y, Chi M-H, Choi J, Park J, et al. (2007) Genome-wide functional analysis of pathogenicity genes in the rice blast fungus. Nat Genet 39: 561-565.
    • (2007) Nat Genet , vol.39 , pp. 561-565
    • Jeon, J.1    Park, S.-Y.2    Chi, M.-H.3    Choi, J.4    Park, J.5
  • 35
    • 0036078078 scopus 로고    scopus 로고
    • Essential genes are more evolutionarily conserved than are nonessential genes in bacteria
    • Jordan IK, Rogozin IB, Wolf YI, Koonin EV, (2002) Essential genes are more evolutionarily conserved than are nonessential genes in bacteria. Genome Res 12: 962-968.
    • (2002) Genome Res , vol.12 , pp. 962-968
    • Jordan, I.K.1    Rogozin, I.B.2    Wolf, Y.I.3    Koonin, E.V.4
  • 37
    • 0029328518 scopus 로고
    • Reduced virulence of Gibberella zeae caused by disruption of a trichthecene toxin biosynthetic gene
    • Proctor RH, Hohn TM, McCormick SP, (1995) Reduced virulence of Gibberella zeae caused by disruption of a trichthecene toxin biosynthetic gene. Mol Plant Microbe Interact 8: 593-601.
    • (1995) Mol Plant Microbe Interact , vol.8 , pp. 593-601
    • Proctor, R.H.1    Hohn, T.M.2    McCormick, S.P.3
  • 38
  • 39
    • 0032926029 scopus 로고    scopus 로고
    • Sexual recombination in Gibberella zeae
    • Bowden RL, Leslie JF, (1999) Sexual recombination in Gibberella zeae. Phytopathology 89: 182-188.
    • (1999) Phytopathology , vol.89 , pp. 182-188
    • Bowden, R.L.1    Leslie, J.F.2
  • 41
    • 4644220750 scopus 로고    scopus 로고
    • Double-joint PCR: a PCR-based molecular tool for gene manipulations in filamentous fungi
    • Yu J-H, Hamari Z, Han K-H, Seo J-A, Reyes-Dominguez Y, et al. (2004) Double-joint PCR: a PCR-based molecular tool for gene manipulations in filamentous fungi. Fungal Genet Biol 41: 973-981.
    • (2004) Fungal Genet Biol , vol.41 , pp. 973-981
    • Yu, J.-H.1    Hamari, Z.2    Han, K.-H.3    Seo, J.-A.4    Reyes-Dominguez, Y.5
  • 42
    • 77649187372 scopus 로고    scopus 로고
    • Functional analyses of two syntaxin-like SNARE genes, GzSYN1 and GzSYN2, in the ascomycete Gibberella zeae
    • Hong S-Y, So J, Lee J, Min K, Son H, et al. (2010) Functional analyses of two syntaxin-like SNARE genes, GzSYN1 and GzSYN2, in the ascomycete Gibberella zeae. Fungal Genet Biol 47: 364-372.
    • (2010) Fungal Genet Biol , vol.47 , pp. 364-372
    • Hong, S.-Y.1    So, J.2    Lee, J.3    Min, K.4    Son, H.5
  • 43
    • 0141580423 scopus 로고    scopus 로고
    • Split-marker recombination for efficient targeted deletion of fungal genes
    • Catlett NL, Lee BN, Yoder OC, Turgeon BG, (2003) Split-marker recombination for efficient targeted deletion of fungal genes. Fungal Genet Newsl 50: 9-11.
    • (2003) Fungal Genet Newsl , vol.50 , pp. 9-11
    • Catlett, N.L.1    Lee, B.N.2    Yoder, O.C.3    Turgeon, B.G.4
  • 44
    • 0001016851 scopus 로고
    • Macroconidium formation in submerged cultures by a non-sporulating strain of Gibberella zeae
    • Cappellini RA, Peterson JL, (1965) Macroconidium formation in submerged cultures by a non-sporulating strain of Gibberella zeae. Mycologia 57: 962-966.
    • (1965) Mycologia , vol.57 , pp. 962-966
    • Cappellini, R.A.1    Peterson, J.L.2
  • 45
    • 2642543504 scopus 로고    scopus 로고
    • Oxidative stress in submerged cultures of fungi
    • Bai Z, Harvey LM, McNeil B, (2003) Oxidative stress in submerged cultures of fungi. Crit Rev Biotechnol 23: 267-302.
    • (2003) Crit Rev Biotechnol , vol.23 , pp. 267-302
    • Bai, Z.1    Harvey, L.M.2    McNeil, B.3
  • 46
    • 0029849845 scopus 로고    scopus 로고
    • Variation in 8-ketotrichothecenes and zearalenone production by Fusarium graminearum isolates from corn and barley in Korea
    • Seo J-A, Kim J-C, Lee D-H, Lee Y-W, (1996) Variation in 8-ketotrichothecenes and zearalenone production by Fusarium graminearum isolates from corn and barley in Korea. Mycopathologia 134: 31-37.
    • (1996) Mycopathologia , vol.134 , pp. 31-37
    • Seo, J.-A.1    Kim, J.-C.2    Lee, D.-H.3    Lee, Y.-W.4
  • 48
    • 13444256478 scopus 로고    scopus 로고
    • Inparanoid: a comprehensive database of eukaryotic orthologs
    • O'Brien KP, Remm M, Sonnhammer ELL, (2005) Inparanoid: a comprehensive database of eukaryotic orthologs. Nucleic Acids Res 33: D476-D480.
    • (2005) Nucleic Acids Res , vol.33
    • O'Brien, K.P.1    Remm, M.2    Sonnhammer, E.L.L.3
  • 49
    • 3042569597 scopus 로고    scopus 로고
    • Annotation transfer between genomes: Protein-protein interologs and protein-DNA regulogs
    • Yu H, Luscombe NM, Lu HX, Zhu X, Xia Y, et al. (2004) Annotation transfer between genomes: Protein-protein interologs and protein-DNA regulogs. Genome Res 14: 1107-1118.
    • (2004) Genome Res , vol.14 , pp. 1107-1118
    • Yu, H.1    Luscombe, N.M.2    Lu, H.X.3    Zhu, X.4    Xia, Y.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.