-
1
-
-
0037032835
-
The protein kinase complement of the human genome
-
Manning, G.; Whyte, D. B.; Martinez, R.; Hunter, T.; Sudarsanam, S. The protein kinase complement of the human genome Science 2002, 298 (5600) 1912-1934
-
(2002)
Science
, vol.298
, Issue.5600
, pp. 1912-1934
-
-
Manning, G.1
Whyte, D.B.2
Martinez, R.3
Hunter, T.4
Sudarsanam, S.5
-
2
-
-
0000187410
-
Conversion of phosphorylase b to phosphorylase a in muscle extracts
-
Fischer, E. H.; Krebs, E. G. Conversion of phosphorylase b to phosphorylase a in muscle extracts J. Biol. Chem. 1955, 216 (1) 121-132
-
(1955)
J. Biol. Chem.
, vol.216
, Issue.1
, pp. 121-132
-
-
Fischer, E.H.1
Krebs, E.G.2
-
3
-
-
0036806311
-
Evolution of protein kinase signaling from yeast to man
-
Manning, G.; Plowman, G. D.; Hunter, T.; Sudarsanam, S. Evolution of protein kinase signaling from yeast to man Trends Biochem. Sci. 2002, 27 (10) 514-520
-
(2002)
Trends Biochem. Sci.
, vol.27
, Issue.10
, pp. 514-520
-
-
Manning, G.1
Plowman, G.D.2
Hunter, T.3
Sudarsanam, S.4
-
4
-
-
84891751622
-
The druggable genome: Evaluation of drug targets in clinical trials suggests major shifts in molecular class and indication
-
Rask-Andersen, M.; Masuram, S.; Schioth, H. B. The druggable genome: evaluation of drug targets in clinical trials suggests major shifts in molecular class and indication Annu. Rev. Pharmacol. Toxicol. 2014, 54, 9-26
-
(2014)
Annu. Rev. Pharmacol. Toxicol.
, vol.54
, pp. 9-26
-
-
Rask-Andersen, M.1
Masuram, S.2
Schioth, H.B.3
-
5
-
-
0026342401
-
Crystal structure of the catalytic subunit of cyclic adenosine monophosphate-dependent protein kinase
-
Knighton, D. R.; Zheng, J. H.; Ten Eyck, L. F.; Ashford, V. A.; Xuong, N. H.; Taylor, S. S.; Sowadski, J. M. Crystal structure of the catalytic subunit of cyclic adenosine monophosphate-dependent protein kinase Science 1991, 253 (5018) 407-414
-
(1991)
Science
, vol.253
, Issue.5018
, pp. 407-414
-
-
Knighton, D.R.1
Zheng, J.H.2
Ten Eyck, L.F.3
Ashford, V.A.4
Xuong, N.H.5
Taylor, S.S.6
Sowadski, J.M.7
-
6
-
-
0023885305
-
The protein kinase family: Conserved features and deduced phylogeny of the catalytic domains
-
Hanks, S. K.; Quinn, A. M.; Hunter, T. The protein kinase family: conserved features and deduced phylogeny of the catalytic domains Science 1988, 241 (4861) 42-52
-
(1988)
Science
, vol.241
, Issue.4861
, pp. 42-52
-
-
Hanks, S.K.1
Quinn, A.M.2
Hunter, T.3
-
7
-
-
77956124562
-
RAF protein-serine/threonine kinases: Structure and regulation
-
Roskoski, R., Jr. RAF protein-serine/threonine kinases: structure and regulation Biochem. Biophys. Res. Commun. 2010, 399 (3) 313-317
-
(2010)
Biochem. Biophys. Res. Commun.
, vol.399
, Issue.3
, pp. 313-317
-
-
Roskoski, R.1
-
8
-
-
53549104402
-
Activation of tyrosine kinases by mutation of the gatekeeper threonine
-
Azam, M.; Seeliger, M. A.; Gray, N. S.; Kuriyan, J.; Daley, G. Q. Activation of tyrosine kinases by mutation of the gatekeeper threonine Nat. Struct Mol. Biol. 2008, 15 (10) 1109-1118
-
(2008)
Nat. Struct Mol. Biol.
, vol.15
, Issue.10
, pp. 1109-1118
-
-
Azam, M.1
Seeliger, M.A.2
Gray, N.S.3
Kuriyan, J.4
Daley, G.Q.5
-
9
-
-
84855503769
-
The rise and fall of gatekeeper mutations? the BCR-ABL1 T315I paradigm
-
Gibbons, D. L.; Pricl, S.; Kantarjian, H.; Cortes, J.; Quintas-Cardama, A. The rise and fall of gatekeeper mutations? The BCR-ABL1 T315I paradigm Cancer 2012, 118 (2) 293-299
-
(2012)
Cancer
, vol.118
, Issue.2
, pp. 293-299
-
-
Gibbons, D.L.1
Pricl, S.2
Kantarjian, H.3
Cortes, J.4
Quintas-Cardama, A.5
-
10
-
-
0029020282
-
Protein kinases 6. The eukaryotic protein kinase superfamily: Kinase (catalytic) domain structure and classification
-
Hanks, S. K.; Hunter, T. Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification FASEB J. 1995, 9 (8) 576-596
-
(1995)
FASEB J.
, vol.9
, Issue.8
, pp. 576-596
-
-
Hanks, S.K.1
Hunter, T.2
-
11
-
-
0033954256
-
The Protein Data Bank
-
Berman, H. M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T. N.; Weissig, H.; Shindyalov, I. N.; Bourne, P. E. The Protein Data Bank Nucleic Acids Res. 2000, 28 (1) 235-242
-
(2000)
Nucleic Acids Res.
, vol.28
, Issue.1
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
12
-
-
0037013143
-
The conformational plasticity of protein kinases
-
Huse, M.; Kuriyan, J. The conformational plasticity of protein kinases Cell 2002, 109 (3) 275-282
-
(2002)
Cell
, vol.109
, Issue.3
, pp. 275-282
-
-
Huse, M.1
Kuriyan, J.2
-
14
-
-
0027408171
-
Crystal structure of the catalytic subunit of cAMP-dependent protein kinase complexed with MgATP and peptide inhibitor
-
Zheng, J.; Knighton, D. R.; ten Eyck, L. F.; Karlsson, R.; Xuong, N.; Taylor, S. S.; Sowadski, J. M. Crystal structure of the catalytic subunit of cAMP-dependent protein kinase complexed with MgATP and peptide inhibitor Biochemistry 1993, 32 (9) 2154-2161
-
(1993)
Biochemistry
, vol.32
, Issue.9
, pp. 2154-2161
-
-
Zheng, J.1
Knighton, D.R.2
Ten Eyck, L.F.3
Karlsson, R.4
Xuong, N.5
Taylor, S.S.6
Sowadski, J.M.7
-
15
-
-
84879377486
-
Sequence determinants of a specific inactive protein kinase conformation
-
Hari, S. B.; Merritt, E. A.; Maly, D. J. Sequence determinants of a specific inactive protein kinase conformation Chem. Biol. 2013, 20 (6) 806-815
-
(2013)
Chem. Biol.
, vol.20
, Issue.6
, pp. 806-815
-
-
Hari, S.B.1
Merritt, E.A.2
Maly, D.J.3
-
16
-
-
0033001789
-
Crystal structures of c-Src reveal features of its autoinhibitory mechanism
-
Xu, W.; Doshi, A.; Lei, M.; Eck, M. J.; Harrison, S. C. Crystal structures of c-Src reveal features of its autoinhibitory mechanism Mol. Cell 1999, 3 (5) 629-638
-
(1999)
Mol. Cell
, vol.3
, Issue.5
, pp. 629-638
-
-
Xu, W.1
Doshi, A.2
Lei, M.3
Eck, M.J.4
Harrison, S.C.5
-
17
-
-
0034665713
-
Structural mechanism for STI-571 inhibition of abelson tyrosine kinase
-
Schindler, T.; Bornmann, W.; Pellicena, P.; Miller, W. T.; Clarkson, B.; Kuriyan, J. Structural mechanism for STI-571 inhibition of abelson tyrosine kinase Science 2000, 289 (5486) 1938-1942
-
(2000)
Science
, vol.289
, Issue.5486
, pp. 1938-1942
-
-
Schindler, T.1
Bornmann, W.2
Pellicena, P.3
Miller, W.T.4
Clarkson, B.5
Kuriyan, J.6
-
18
-
-
0036682301
-
Crystal structures of the kinase domain of c-Abl in complex with the small molecule inhibitors PD173955 and imatinib (STI-571)
-
Nagar, B.; Bornmann, W. G.; Pellicena, P.; Schindler, T.; Veach, D. R.; Miller, W. T.; Clarkson, B.; Kuriyan, J. Crystal structures of the kinase domain of c-Abl in complex with the small molecule inhibitors PD173955 and imatinib (STI-571) Cancer Res. 2002, 62 (15) 4236-4243
-
(2002)
Cancer Res.
, vol.62
, Issue.15
, pp. 4236-4243
-
-
Nagar, B.1
Bornmann, W.G.2
Pellicena, P.3
Schindler, T.4
Veach, D.R.5
Miller, W.T.6
Clarkson, B.7
Kuriyan, J.8
-
19
-
-
0028582185
-
Crystal structure of the tyrosine kinase domain of the human insulin receptor
-
Hubbard, S. R.; Wei, L.; Ellis, L.; Hendrickson, W. A. Crystal structure of the tyrosine kinase domain of the human insulin receptor Nature 1994, 372 (6508) 746-754
-
(1994)
Nature
, vol.372
, Issue.6508
, pp. 746-754
-
-
Hubbard, S.R.1
Wei, L.2
Ellis, L.3
Hendrickson, W.A.4
-
20
-
-
79953308071
-
Catalytic control in the EGF receptor and its connection to general kinase regulatory mechanisms
-
Jura, N.; Zhang, X.; Endres, N. F.; Seeliger, M. A.; Schindler, T.; Kuriyan, J. Catalytic control in the EGF receptor and its connection to general kinase regulatory mechanisms Mol. Cell 2011, 42 (1) 9-22
-
(2011)
Mol. Cell
, vol.42
, Issue.1
, pp. 9-22
-
-
Jura, N.1
Zhang, X.2
Endres, N.F.3
Seeliger, M.A.4
Schindler, T.5
Kuriyan, J.6
-
21
-
-
57749188299
-
Targeting cancer with small molecule kinase inhibitors
-
Zhang, J.; Yang, P. L.; Gray, N. S. Targeting cancer with small molecule kinase inhibitors Nat. Rev. Cancer 2009, 9 (1) 28-39
-
(2009)
Nat. Rev. Cancer
, vol.9
, Issue.1
, pp. 28-39
-
-
Zhang, J.1
Yang, P.L.2
Gray, N.S.3
-
22
-
-
15744380263
-
Structures of human MAP kinase kinase 1 (MEK1) and MEK2 describe novel noncompetitive kinase inhibition
-
Ohren, J. F.; Chen, H.; Pavlovsky, A.; Whitehead, C.; Zhang, E.; Kuffa, P.; Yan, C.; McConnell, P.; Spessard, C.; Banotai, C.; Mueller, W. T.; Delaney, A.; Omer, C.; Sebolt-Leopold, J.; Dudley, D. T.; Leung, I. K.; Flamme, C.; Warmus, J.; Kaufman, M.; Barrett, S.; Tecle, H.; Hasemann, C. A. Structures of human MAP kinase kinase 1 (MEK1) and MEK2 describe novel noncompetitive kinase inhibition Nat. Struct. Mol. Biol. 2004, 11 (12) 1192-1197
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, Issue.12
, pp. 1192-1197
-
-
Ohren, J.F.1
Chen, H.2
Pavlovsky, A.3
Whitehead, C.4
Zhang, E.5
Kuffa, P.6
Yan, C.7
McConnell, P.8
Spessard, C.9
Banotai, C.10
Mueller, W.T.11
Delaney, A.12
Omer, C.13
Sebolt-Leopold, J.14
Dudley, D.T.15
Leung, I.K.16
Flamme, C.17
Warmus, J.18
Kaufman, M.19
Barrett, S.20
Tecle, H.21
Hasemann, C.A.22
more..
-
23
-
-
67349094019
-
A new screening assay for allosteric inhibitors of cSrc
-
Simard, J. R.; Kluter, S.; Grutter, C.; Getlik, M.; Rabiller, M.; Rode, H. B.; Rauh, D. A new screening assay for allosteric inhibitors of cSrc Nat. Chem. Biol. 2009, 5 (6) 394-396
-
(2009)
Nat. Chem. Biol.
, vol.5
, Issue.6
, pp. 394-396
-
-
Simard, J.R.1
Kluter, S.2
Grutter, C.3
Getlik, M.4
Rabiller, M.5
Rode, H.B.6
Rauh, D.7
-
24
-
-
84871730931
-
Approaches to discover non-ATP site kinase inhibitors
-
Gavrin, L. K.; Saiah, E. Approaches to discover non-ATP site kinase inhibitors MedChemComm 2013, 4 (1) 41-51
-
(2013)
MedChemComm
, vol.4
, Issue.1
, pp. 41-51
-
-
Gavrin, L.K.1
Saiah, E.2
-
25
-
-
40949151046
-
Doing more than just the structure-structural genomics in kinase drug discovery
-
Marsden, B. D.; Knapp, S. Doing more than just the structure-structural genomics in kinase drug discovery Curr. Opin. Chem. Biol. 2008, 12 (1) 40-45
-
(2008)
Curr. Opin. Chem. Biol.
, vol.12
, Issue.1
, pp. 40-45
-
-
Marsden, B.D.1
Knapp, S.2
-
26
-
-
84893065058
-
KLIFS: A knowledge-based structural database to navigate kinase-ligand interaction space
-
van Linden, O. P.; Kooistra, A. J.; Leurs, R.; de Esch, I. J.; de Graaf, C. KLIFS: a knowledge-based structural database to navigate kinase-ligand interaction space J. Med. Chem. 2014, 57 (2) 249-277
-
(2014)
J. Med. Chem.
, vol.57
, Issue.2
, pp. 249-277
-
-
Van Linden, O.P.1
Kooistra, A.J.2
Leurs, R.3
De Esch, I.J.4
De Graaf, C.5
-
27
-
-
84876517808
-
KIDFamMap: A database of kinase-inhibitor-disease family maps for kinase inhibitor selectivity and binding mechanisms
-
(Database issue)
-
Chiu, Y. Y.; Lin, C. T.; Huang, J. W.; Hsu, K. C.; Tseng, J. H.; You, S. R.; Yang, J. M. KIDFamMap: a database of kinase-inhibitor-disease family maps for kinase inhibitor selectivity and binding mechanisms Nucleic Acids Res. 2013, 41, D430-440 (Database issue)
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 430-440
-
-
Chiu, Y.Y.1
Lin, C.T.2
Huang, J.W.3
Hsu, K.C.4
Tseng, J.H.5
You, S.R.6
Yang, J.M.7
-
28
-
-
84937114896
-
-
Kinase SARfari.
-
Kinase SARfari: https://www.ebi.ac.uk/chembl/sarfari/kinasesarfari.
-
-
-
-
29
-
-
84903208494
-
Exploration of type II binding mode: A privileged approach for kinase inhibitor focused drug discovery?
-
Zhao, Z.; Wu, H.; Wang, L.; Liu, Y.; Knapp, S.; Liu, Q.; Gray, N. S. Exploration of type II binding mode: A privileged approach for kinase inhibitor focused drug discovery? ACS Chem. Biol. 2014, 9 (6) 1230-1241
-
(2014)
ACS Chem. Biol.
, vol.9
, Issue.6
, pp. 1230-1241
-
-
Zhao, Z.1
Wu, H.2
Wang, L.3
Liu, Y.4
Knapp, S.5
Liu, Q.6
Gray, N.S.7
-
30
-
-
80755125565
-
Comprehensive assay of kinase catalytic activity reveals features of kinase inhibitor selectivity
-
Anastassiadis, T.; Deacon, S. W.; Devarajan, K.; Ma, H.; Peterson, J. R. Comprehensive assay of kinase catalytic activity reveals features of kinase inhibitor selectivity Nat. Biotechnol. 2011, 29 (11) 1039-1045
-
(2011)
Nat. Biotechnol.
, vol.29
, Issue.11
, pp. 1039-1045
-
-
Anastassiadis, T.1
Deacon, S.W.2
Devarajan, K.3
Ma, H.4
Peterson, J.R.5
-
31
-
-
33845197964
-
Surface comparison of active and inactive protein kinases identifies a conserved activation mechanism
-
Kornev, A. P.; Haste, N. M.; Taylor, S. S.; Eyck, L. F. Surface comparison of active and inactive protein kinases identifies a conserved activation mechanism Proc. Natl. Acad. Sci. U.S.A. 2006, 103 (47) 17783-17788
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, Issue.47
, pp. 17783-17788
-
-
Kornev, A.P.1
Haste, N.M.2
Taylor, S.S.3
Eyck, L.F.4
-
32
-
-
38549097071
-
The universal protein resource (UniProt)
-
(Database issue).
-
The universal protein resource (UniProt). Nucleic Acids Res. 2008, 36, D190-D195 (Database issue).
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 190-D195
-
-
-
33
-
-
84937138787
-
-
SGC: Progress in protein kinase structural biology.
-
SGC: Progress in protein kinase structural biology. http://www.thesgc.org/scientists/resources/kinases.
-
-
-
-
34
-
-
84885099789
-
Kinome Render: A stand-alone and Web-accessible tool to annotate the human protein kinome tree
-
Chartier, M.; Chenard, T.; Barker, J.; Najmanovich, R. Kinome Render: a stand-alone and Web-accessible tool to annotate the human protein kinome tree PeerJ 2013, 1, e126
-
(2013)
PeerJ
, vol.1
, pp. 126
-
-
Chartier, M.1
Chenard, T.2
Barker, J.3
Najmanovich, R.4
-
35
-
-
80755125575
-
Comprehensive analysis of kinase inhibitor selectivity
-
Davis, M. I.; Hunt, J. P.; Herrgard, S.; Ciceri, P.; Wodicka, L. M.; Pallares, G.; Hocker, M.; Treiber, D. K.; Zarrinkar, P. P. Comprehensive analysis of kinase inhibitor selectivity Nat. Biotechnol. 2011, 29 (11) 1046-1051
-
(2011)
Nat. Biotechnol.
, vol.29
, Issue.11
, pp. 1046-1051
-
-
Davis, M.I.1
Hunt, J.P.2
Herrgard, S.3
Ciceri, P.4
Wodicka, L.M.5
Pallares, G.6
Hocker, M.7
Treiber, D.K.8
Zarrinkar, P.P.9
-
36
-
-
58149102648
-
Type-II kinase inhibitor docking, screening, and profiling using modified structures of active kinase states
-
Kufareva, I.; Abagyan, R. Type-II kinase inhibitor docking, screening, and profiling using modified structures of active kinase states J. Med. Chem. 2008, 51 (24) 7921-7932
-
(2008)
J. Med. Chem.
, vol.51
, Issue.24
, pp. 7921-7932
-
-
Kufareva, I.1
Abagyan, R.2
-
37
-
-
77950878509
-
Crystal structure of an Aurora-A mutant that mimics Aurora-B bound to MLN8054: Insights into selectivity and drug design
-
Dodson, C. A.; Kosmopoulou, M.; Richards, M. W.; Atrash, B.; Bavetsias, V.; Blagg, J.; Bayliss, R. Crystal structure of an Aurora-A mutant that mimics Aurora-B bound to MLN8054: insights into selectivity and drug design Biochem. J. 2010, 427 (1) 19-28
-
(2010)
Biochem. J.
, vol.427
, Issue.1
, pp. 19-28
-
-
Dodson, C.A.1
Kosmopoulou, M.2
Richards, M.W.3
Atrash, B.4
Bavetsias, V.5
Blagg, J.6
Bayliss, R.7
-
38
-
-
84870658890
-
Sorafenib inhibits p38alpha activity in colorectal cancer cells and synergizes with the DFG-in inhibitor SB202190 to increase apoptotic response
-
Grossi, V.; Liuzzi, M.; Murzilli, S.; Martelli, N.; Napoli, A.; Ingravallo, G.; Del Rio, A.; Simone, C. Sorafenib inhibits p38alpha activity in colorectal cancer cells and synergizes with the DFG-in inhibitor SB202190 to increase apoptotic response Cancer Biol. Ther 2012, 13 (14) 1471-1481
-
(2012)
Cancer Biol. Ther
, vol.13
, Issue.14
, pp. 1471-1481
-
-
Grossi, V.1
Liuzzi, M.2
Murzilli, S.3
Martelli, N.4
Napoli, A.5
Ingravallo, G.6
Del Rio, A.7
Simone, C.8
-
39
-
-
79251564897
-
Insights into the conformational flexibility of Bruton's tyrosine kinase from multiple ligand complex structures
-
Kuglstatter, A.; Wong, A.; Tsing, S.; Lee, S. W.; Lou, Y.; Villasenor, A. G.; Bradshaw, J. M.; Shaw, D.; Barnett, J. W.; Browner, M. F. Insights into the conformational flexibility of Bruton's tyrosine kinase from multiple ligand complex structures Protein Sci. 2011, 20 (2) 428-436
-
(2011)
Protein Sci.
, vol.20
, Issue.2
, pp. 428-436
-
-
Kuglstatter, A.1
Wong, A.2
Tsing, S.3
Lee, S.W.4
Lou, Y.5
Villasenor, A.G.6
Bradshaw, J.M.7
Shaw, D.8
Barnett, J.W.9
Browner, M.F.10
-
40
-
-
84937117259
-
-
The ABC of Kinase Conformations.
-
The ABC of Kinase Conformations. http://www.soci.org/News/Finechems/~/media/Files/Conference%20Downloads/2012/Protein%20Kinase%202012/Henrik-Mobitz-Presentation.ashx.
-
-
-
-
41
-
-
84878884695
-
What general conclusions can we draw from kinase profiling data sets?
-
Sutherland, J. J.; Gao, C.; Cahya, S.; Vieth, M. What general conclusions can we draw from kinase profiling data sets? Biochim. Biophys. Acta 2013, 1834 (7) 1425-1433
-
(2013)
Biochim. Biophys. Acta
, vol.1834
, Issue.7
, pp. 1425-1433
-
-
Sutherland, J.J.1
Gao, C.2
Cahya, S.3
Vieth, M.4
-
42
-
-
79952921586
-
Navigating the kinome
-
Metz, J. T.; Johnson, E. F.; Soni, N. B.; Merta, P. J.; Kifle, L.; Hajduk, P. J. Navigating the kinome Nat. Chem. Biol. 2011, 7 (4) 200-202
-
(2011)
Nat. Chem. Biol.
, vol.7
, Issue.4
, pp. 200-202
-
-
Metz, J.T.1
Johnson, E.F.2
Soni, N.B.3
Merta, P.J.4
Kifle, L.5
Hajduk, P.J.6
-
43
-
-
36148943501
-
Gini coefficient: A new way to express selectivity of kinase inhibitors against a family of kinases
-
Graczyk, P. P. Gini coefficient: a new way to express selectivity of kinase inhibitors against a family of kinases J. Med. Chem. 2007, 50 (23) 5773-5779
-
(2007)
J. Med. Chem.
, vol.50
, Issue.23
, pp. 5773-5779
-
-
Graczyk, P.P.1
-
44
-
-
33847659183
-
C-Src binds to the cancer drug imatinib with an inactive Abl/c-Kit conformation and a distributed thermodynamic penalty
-
Seeliger, M. A.; Nagar, B.; Frank, F.; Cao, X.; Henderson, M. N.; Kuriyan, J. c-Src binds to the cancer drug imatinib with an inactive Abl/c-Kit conformation and a distributed thermodynamic penalty Structure 2007, 15 (3) 299-311
-
(2007)
Structure
, vol.15
, Issue.3
, pp. 299-311
-
-
Seeliger, M.A.1
Nagar, B.2
Frank, F.3
Cao, X.4
Henderson, M.N.5
Kuriyan, J.6
-
45
-
-
84873135773
-
Explaining why Gleevec is a specific and potent inhibitor of Abl kinase
-
Lin, Y. L.; Meng, Y.; Jiang, W.; Roux, B. Explaining why Gleevec is a specific and potent inhibitor of Abl kinase Proc. Natl. Acad. Sci. U.S.A. 2013, 110 (5) 1664-1669
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, Issue.5
, pp. 1664-1669
-
-
Lin, Y.L.1
Meng, Y.2
Jiang, W.3
Roux, B.4
-
46
-
-
84885131303
-
Computational analysis of the binding specificity of Gleevec to Abl, c-Kit, Lck, and c-Src tyrosine kinases
-
Lin, Y. L.; Roux, B. Computational analysis of the binding specificity of Gleevec to Abl, c-Kit, Lck, and c-Src tyrosine kinases J. Am. Chem. Soc. 2013, 135 (39) 14741-14753
-
(2013)
J. Am. Chem. Soc.
, vol.135
, Issue.39
, pp. 14741-14753
-
-
Lin, Y.L.1
Roux, B.2
-
47
-
-
84908391622
-
Computational study of Gleevec and G6G reveals molecular determinants of kinase inhibitor selectivity
-
Lin, Y. L.; Meng, Y.; Huang, L.; Roux, B. Computational study of Gleevec and G6G reveals molecular determinants of kinase inhibitor selectivity J. Am. Chem. Soc. 2014, 136, 14753-14762
-
(2014)
J. Am. Chem. Soc.
, vol.136
, pp. 14753-14762
-
-
Lin, Y.L.1
Meng, Y.2
Huang, L.3
Roux, B.4
-
48
-
-
77951557992
-
Molecular dynamics simulations show that conformational selection governs the binding preferences of imatinib for several tyrosine kinases
-
Aleksandrov, A.; Simonson, T. Molecular dynamics simulations show that conformational selection governs the binding preferences of imatinib for several tyrosine kinases J. Biol. Chem. 2010, 285 (18) 13807-13815
-
(2010)
J. Biol. Chem.
, vol.285
, Issue.18
, pp. 13807-13815
-
-
Aleksandrov, A.1
Simonson, T.2
-
49
-
-
84923367313
-
Energetic dissection of Gleevec's selectivity toward human tyrosine kinases
-
Agafonov, R. V.; Wilson, C.; Otten, R.; Buosi, V.; Kern, D. Energetic dissection of Gleevec's selectivity toward human tyrosine kinases Nat. Struct. Mol. Biol. 2014, 21 (10) 848-853
-
(2014)
Nat. Struct. Mol. Biol.
, vol.21
, Issue.10
, pp. 848-853
-
-
Agafonov, R.V.1
Wilson, C.2
Otten, R.3
Buosi, V.4
Kern, D.5
-
50
-
-
84876902448
-
Transitions to catalytically inactive conformations in EGFR kinase
-
Shan, Y.; Arkhipov, A.; Kim, E. T.; Pan, A. C.; Shaw, D. E. Transitions to catalytically inactive conformations in EGFR kinase Proc. Natl. Acad. Sci. U.S.A. 2013, 110 (18) 7270-7275
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, Issue.18
, pp. 7270-7275
-
-
Shan, Y.1
Arkhipov, A.2
Kim, E.T.3
Pan, A.C.4
Shaw, D.E.5
-
51
-
-
84919832780
-
Activation pathway of Src kinase reveals intermediate states as targets for drug design
-
Shukla, D.; Meng, Y.; Roux, B.; Pande, V. S. Activation pathway of Src kinase reveals intermediate states as targets for drug design Nat. Commun. 2014, 5, 3397
-
(2014)
Nat. Commun.
, vol.5
, pp. 3397
-
-
Shukla, D.1
Meng, Y.2
Roux, B.3
Pande, V.S.4
-
52
-
-
84859961776
-
AlphaC helix as a switch in the conformational transition of Src/CDK-like kinase domains
-
Huang, H.; Zhao, R.; Dickson, B. M.; Skeel, R. D.; Post, C. B. alphaC helix as a switch in the conformational transition of Src/CDK-like kinase domains J. Phys. Chem. B 2012, 116 (15) 4465-4475
-
(2012)
J. Phys. Chem. B
, vol.116
, Issue.15
, pp. 4465-4475
-
-
Huang, H.1
Zhao, R.2
Dickson, B.M.3
Skeel, R.D.4
Post, C.B.5
-
53
-
-
53649083930
-
Small molecule recognition of c-Src via the imatinib-binding conformation
-
Dar, A. C.; Lopez, M. S.; Shokat, K. M. Small molecule recognition of c-Src via the imatinib-binding conformation Chem. Biol. 2008, 15 (10) 1015-1022
-
(2008)
Chem. Biol.
, vol.15
, Issue.10
, pp. 1015-1022
-
-
Dar, A.C.1
Lopez, M.S.2
Shokat, K.M.3
-
54
-
-
65549152514
-
Equally potent inhibition of c-Src and Abl by compounds that recognize inactive kinase conformations
-
Seeliger, M. A.; Ranjitkar, P.; Kasap, C.; Shan, Y.; Shaw, D. E.; Shah, N. P.; Kuriyan, J.; Maly, D. J. Equally potent inhibition of c-Src and Abl by compounds that recognize inactive kinase conformations Cancer Res. 2009, 69 (6) 2384-2392
-
(2009)
Cancer Res.
, vol.69
, Issue.6
, pp. 2384-2392
-
-
Seeliger, M.A.1
Ranjitkar, P.2
Kasap, C.3
Shan, Y.4
Shaw, D.E.5
Shah, N.P.6
Kuriyan, J.7
Maly, D.J.8
-
55
-
-
77956607370
-
The binding energy distribution analysis method (BEDAM) for the estimation of protein-ligand binding affinities
-
Gallicchio, E.; Lapelosa, M.; Levy, R. M. The binding energy distribution analysis method (BEDAM) for the estimation of protein-ligand binding affinities J. Chem. Theory Comput. 2010, 6 (9) 2961-2977
-
(2010)
J. Chem. Theory Comput.
, vol.6
, Issue.9
, pp. 2961-2977
-
-
Gallicchio, E.1
Lapelosa, M.2
Levy, R.M.3
-
56
-
-
84856694630
-
The different flexibility of c-Src and c-Abl kinases regulates the accessibility of a druggable inactive conformation
-
Lovera, S.; Sutto, L.; Boubeva, R.; Scapozza, L.; Dolker, N.; Gervasio, F. L. The different flexibility of c-Src and c-Abl kinases regulates the accessibility of a druggable inactive conformation J. Am. Chem. Soc. 2012, 134 (5) 2496-2499
-
(2012)
J. Am. Chem. Soc.
, vol.134
, Issue.5
, pp. 2496-2499
-
-
Lovera, S.1
Sutto, L.2
Boubeva, R.3
Scapozza, L.4
Dolker, N.5
Gervasio, F.L.6
-
57
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F.; Madden, T. L.; Schaffer, A. A.; Zhang, J.; Zhang, Z.; Miller, W.; Lipman, D. J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res. 1997, 25 (17) 3389-3402
-
(1997)
Nucleic Acids Res.
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
58
-
-
0043180474
-
PISCES: A protein sequence culling server
-
Wang, G.; Dunbrack, R. L., Jr. PISCES: a protein sequence culling server Bioinformatics 2003, 19 (12) 1589-1591
-
(2003)
Bioinformatics
, vol.19
, Issue.12
, pp. 1589-1591
-
-
Wang, G.1
Dunbrack, R.L.2
-
59
-
-
23144438711
-
PISCES: Recent improvements to a PDB sequence culling server
-
(Web server issue)
-
Wang, G.; Dunbrack, R. L., Jr. PISCES: recent improvements to a PDB sequence culling server Nucleic Acids Res. 2005, 33, W94-W98 (Web server issue)
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 94-W98
-
-
Wang, G.1
Dunbrack, R.L.2
-
60
-
-
79960976768
-
UniProt knowledgebase: A hub of integrated protein data
-
Magrane, M.; Consortium, U. UniProt knowledgebase: a hub of integrated protein data Database (Oxford, U. K.) 2011, 2011, bar009
-
(2011)
Database (Oxford, U. K.)
, vol.2011
, pp. 009
-
-
Magrane, M.1
Consortium, U.2
-
61
-
-
84876579771
-
SIFTS: Structure integration with function, taxonomy and sequences resource
-
(Database issue)
-
Velankar, S.; Dana, J. M.; Jacobsen, J.; van Ginkel, G.; Gane, P. J.; Luo, J.; Oldfield, T. J.; O'Donovan, C.; Martin, M. J.; Kleywegt, G. J. SIFTS: structure integration with function, taxonomy and sequences resource Nucleic Acids Res. 2013, 41, D483-D489 (Database issue)
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 483-D489
-
-
Velankar, S.1
Dana, J.M.2
Jacobsen, J.3
Van Ginkel, G.4
Gane, P.J.5
Luo, J.6
Oldfield, T.J.7
O'Donovan, C.8
Martin, M.J.9
Kleywegt, G.J.10
-
62
-
-
82255164267
-
MDpocket: Open-source cavity detection and characterization on molecular dynamics trajectories
-
Schmidtke, P.; Bidon-Chanal, A.; Luque, F. J.; Barril, X. MDpocket: open-source cavity detection and characterization on molecular dynamics trajectories Bioinformatics 2011, 27 (23) 3276-3285
-
(2011)
Bioinformatics
, vol.27
, Issue.23
, pp. 3276-3285
-
-
Schmidtke, P.1
Bidon-Chanal, A.2
Luque, F.J.3
Barril, X.4
-
63
-
-
84865149772
-
Optimal simultaneous superpositioning of multiple structures with missing data
-
Theobald, D. L.; Steindel, P. A. Optimal simultaneous superpositioning of multiple structures with missing data Bioinformatics 2012, 28 (15) 1972-1979
-
(2012)
Bioinformatics
, vol.28
, Issue.15
, pp. 1972-1979
-
-
Theobald, D.L.1
Steindel, P.A.2
-
64
-
-
67649422714
-
Fpocket: An open source platform for ligand pocket detection
-
Le Guilloux, V.; Schmidtke, P.; Tuffery, P. Fpocket: an open source platform for ligand pocket detection BMC Bioinf. 2009, 10, 168
-
(2009)
BMC Bioinf.
, vol.10
, pp. 168
-
-
Le Guilloux, V.1
Schmidtke, P.2
Tuffery, P.3
-
65
-
-
0029878720
-
VMD: Visual molecular dynamics
-
27 - 28.
-
Humphrey, W.; Dalke, A.; Schulten, K. VMD: visual molecular dynamics. J. Mol. Graphics 1996, 14 (1), 33-38, 27-28.
-
(1996)
J. Mol. Graphics
, vol.14
, Issue.1
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
|