microRNAs as developmental regulators

Cold Spring Harbor Perspectives in Biology

Volumn 7, Issue 7, 2015, Pages 1-9

  Ivey, Kathryn N ^a   Srivastava, Deepak ^a  

^a GLADSTONE INSTITUTE OF CARDIOVASCULAR DISEASE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA;

ANIMAL; BIOLOGICAL MODEL; BONE DEVELOPMENT; CELL DIFFERENTIATION; CHEMISTRY; EMBRYOLOGY; GASTRULATION; GENE EXPRESSION REGULATION; GENETICS; HEMATOPOIESIS; METABOLISM; MOUSE; MUSCLE DEVELOPMENT; NERVOUS SYSTEM; PHYSIOLOGY; SIGNAL TRANSDUCTION;

ANIMALS; BONE DEVELOPMENT; CELL DIFFERENTIATION; GASTRULATION; GENE EXPRESSION REGULATION, DEVELOPMENTAL; HEMATOPOIESIS; MICE; MICRORNAS; MODELS, GENETIC; MUSCLE DEVELOPMENT; NERVOUS SYSTEM; SIGNAL TRANSDUCTION;

EID: 84936749142     PISSN: None     EISSN: 19430264     Source Type: Journal    
DOI: 10.1101/cshperspect.a008144     Document Type: Article

References (49)

1. Bohnsack MT, Czaplinski K, Gorlich D. 2004. Exportin 5 is a RanGTPdependent dsRNA-binding protein that mediates nuclear export of pre-miRNAs. RNA 10: 185-191.
2. Borchert GM, Lanier W, Davidson BL. 2006. RNA polymerase III transcribes human microRNAs. Nat Struct Mol Biol 13: 1097-1101.
3. Brennecke J, Stark A, Russell RB, Cohen SM. 2005. Principles of micro- RNA-target recognition. PLoS Biol 3: e85.
4. Cai X, Hagedorn CH, Cullen BR. 2004. Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs. RNA 10: 1957-1966.
5. Chaudhuri K, Chatterjee R. 2007. MicroRNA detection and target prediction: Integration of computational and experimental approaches. DNA Cell Biol 26: 321-337.
6. Chen CZ, Li L, Lodish HF, Bartel DP. 2004. MicroRNAs modulate hematopoietic lineage differentiation. Science 303: 83-86.
7. Chen JF, Mandel EM, Thomson JM, Wu Q, Callis TE, Hammond SM, Conlon FL,Wang DZ. 2006. The role of microRNA-1 and microRNA- 133 in skeletal muscle proliferation and differentiation. Nat Genet 38: 228-233.
8. Choi WY, Giraldez AJ, Schier AF. 2007. Target protectors reveal dampening and balancing of Nodal agonist and antagonist by miR-430. Science 318: 271-274.
9. Clop A, Marcq F, Takeda H, Pirottin D, Tordoir X, Bibe B, Bouix J, Caiment F, Elsen JM, Eychenne F, et al. 2006. A mutation creating a potential illegitimate microRNA target site in the myostatin gene affects muscularity in sheep. Nat Genet 38: 813-818.
10. Cordes KR, Srivastava D. 2009. MicroRNA regulation of cardiovascular development. Circ Res 104: 724-732.
11. Cordes KR, Sheehy NT,White MP, Berry EC,Morton SU,Muth AN, Lee TH, Miano JM, Ivey KN, Srivastava D. 2009. miR-145 and miR-143 regulate smooth muscle cell fate and plasticity. Nature 460: 705-710.
12. Delaloy C, Liu L, Lee JA, Su H, Shen F, Yang GY, Young WL, Ivey KN, Gao FB. 2010. MicroRNA-9 coordinates proliferation and migration of human embryonic stem cell-derived neural progenitors. Cell Stem Cell 6: 323-335.
13. Doench JG, Sharp PA. 2004. Specificity of microRNA target selection in translational repression. Genes Dev 18: 504-511.
14. Ezzeddine N, Chang TC, Zhu W, Yamashita A, Chen CY, Zhong Z, Yamashita Y, Zheng D, Shyu AB. 2007. Human TOB, an antiproliferative transcription factor, is a poly(A)-binding protein-dependent positive regulator of cytoplasmic mRNA deadenylation. Mol Cell Biol 27: 7791-7801.
15. Garzon R, Croce CM. 2008. MicroRNAs in normal and malignant hematopoiesis. Curr Opin Hematol 15: 352-358.
16. Gregory RI, Chendrimada TP, Cooch N, Shiekhattar R. 2005. Human RISC couples microRNA biogenesis and posttranscriptional gene silencing. Cell 123: 631-640.
17. Ivey KN, Srivastava D. 2010. MicroRNAs as regulators of differentiation and cell fate decisions. Cell Stem Cell 7: 36-41.
18. Ivey KN,Muth A, Arnold J, KingFW, Yeh RF, Fish JE, Hsiao EC, Schwartz RJ, Conklin BR, Bernstein HS, et al. 2008. MicroRNA regulation of cell lineages in mouse and human embryonic stem cells. Cell Stem Cell 2: 219-229.
19. Khvorova A, Reynolds A, Jayasena SD. 2003. Functional siRNAs and miRNAs exhibit strand bias. Cell 115: 209-216.
20. Kim SK, Nam JW, Rhee JK, Lee WJ, Zhang BT. 2006. miTarget: Micro- RNA target gene prediction using a support vector machine. BMC Bioinformatics 7: 411.
21. Krichevsky AM, Sonntag KC, Isacson O, Kosik KS. 2006. Specific micro- RNAs modulate embryonic stem cell-derived neurogenesis. Stem Cells 24: 857-864.
22. Kwon C, Han Z, Olson EN, Srivastava D. 2005. MicroRNA1 influences cardiac differentiation in Drosophila and regulates Notch signaling. Proc Natl Acad Sci 102: 18986-18991.
23. Landthaler M, Yalcin A, Tuschl T. 2004. The human DiGeorge syndrome critical region gene 8 and its D. melanogaster homolog are required for miRNA biogenesis. Curr Biol 14: 2162-2167.
24. Lee RC, Ambros V. 2001. An extensive class of small RNAs in Caenorhabditis elegans. Science 294: 862-864.
25. Lee RC, Feinbaum RL, Ambros V. 1993. The C. elegans heterochronic gene lin-4 encodes smallRNAs with antisense complementarity to lin- 14. Cell 75: 843-854.
26. Lewis BP, Burge CB, Bartel DP. 2005. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20.
27. Li Z, Hassan MQ, Volinia S, vanWijnen AJ, Stein JL, Croce CM, Lian JB, Stein GS. 2008. A microRNA signature for a BMP2-induced osteoblast lineage commitment program. Proc Natl Acad Sci 105: 13906-13911.
28. Li H, Xie H, Liu W, Hu R, Huang B, Tan YF, Xu K, Sheng ZF, Zhou HD, Wu XP, et al. 2009. A novel microRNA targeting HDAC5 regulates osteoblast differentiation in mice and contributes to primary osteoporosis in humans. J Clin Invest 119: 3666-3677.
29. Lim LP, Lau NC, Garrett-Engele P, Grimson A, Schelter JM, Castle J, Bartel DP, Linsley PS, Johnson JM. 2005. Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 433: 769-773.
30. Liu J, Valencia-Sanchez MA, Hannon GJ, Parker R. 2005. MicroRNAdependent localization of targeted mRNAs to mammalian P-bodies. Nat Cell Biol 7: 719-723.
31. Liu N, Bezprozvannaya S, Williams AH, Qi X, Richardson JA, Bassel-Duby R, Olson EN. 2008. microRNA-133a regulates cardiomyocyte proliferation and suppresses smooth muscle gene expression in the heart. Genes Dev 22: 3242-3254.
32. Niu Z, Iyer D, Conway SJ, Martin JF, Ivey K, Srivastava D, Nordheim A, Schwartz RJ. 2008. Serum response factor orchestrates nascent sarcomerogenesis and silences the biomineralization gene program in the heart. Proc Natl Acad Sci 105: 17824-17829.
33. Pasquinelli AE, Reinhart BJ, Slack F, Martindale MQ, Kuroda MI, Maller B, Hayward DC, Ball EE, Degnan B,Muller P, et al. 2000. Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA. Nature 408: 86-89.
34. Rajewsky N. 2006. microRNA target predictions in animals. Nat Genet 38: S8-S13.
35. Reinhart BJ, Slack FJ, Basson M, Pasquinelli AE, Bettinger JC,Rougvie AE, Horvitz HR, Ruvkun G. 2000. The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans.Nature 403: 901-906.
36. Ro S, Park C, Young D, Sanders KM, Yan W. 2007. Tissue-dependent paired expression of miRNAs. Nucleic Acids Res 35: 5944-5953.
37. Rosa A, Spagnoli FM, Brivanlou AH. 2009. The miR-430/427/302 family controls mesendodermal fate specification via species-specific target selection. Dev Cell 16: 517-527.
38. Ruby JG, Jan CH, Bartel DP. 2007. Intronic microRNA precursors that bypass Drosha processing. Nature 448: 83-86.
39. Schwarz DS, Hutvagner G, Du T, Xu Z, Aronin N, Zamore PD. 2003. Asymmetry in the assembly of the RNAi enzyme complex. Cell 115: 199-208.
40. Stark A, Brennecke J, Bushati N, Russell RB, Cohen SM. 2005. Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3′UTR evolution. Cell 123: 1133-1146.
41. Taulli R, Bersani F, Foglizzo V, Linari A, Vigna E, Ladanyi M, Tuschl T, Ponzetto C. 2009. The muscle-specific microRNA miR-206 blocks human rhabdomyosarcoma growth in xenotransplanted mice by promoting myogenic differentiation. J Clin Invest 119: 2366-2378.
42. Wang Y, Medvid R, Melton C, Jaenisch R, Blelloch R. 2007. DGCR8 is essential for microRNA biogenesis and silencing of embryonic stem cell self-renewal. Nat Genet 39: 380-385.
43. Yan D, Dong Xda E, Chen X, Wang L, Lu C, Wang J, Qu J, Tu L. 2009. MicroRNA-1/206 targets c-Met and inhibits rhabdomyosarcoma development. J Biol Chem 284: 29596-29604.
44. Zeng Y, Cullen BR. 2004. Structural requirements for pre-microRNA binding and nuclear export by Exportin 5. Nucleic Acids Res 32: 4776-4785.
45. Zhang C. 2009. MicroRNA-145 in vascular smooth muscle cell biology: A new therapeutic target for vascular disease. Cell Cycle 8: 3469-3473.
46. Zhao Y, SrivastavaD. 2007. Adevelopmental viewof microRNA function. Trends Biochem Sci 32: 189-197.
47. Zhao Y, Samal E, Srivastava D. 2005. Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesis. Nature 436: 214-220.
48. Zhao Y, Ransom JF, Li A, Vedantham V, von Drehle M, Muth AN, Tsuchihashi T, McManus MT, Schwartz RJ, Srivastava D. 2007. Dysregulation of cardiogenesis, cardiac conduction, and cell cycle in mice lacking miRNA-1-2. Cell 129: 303-317.
49. Zhao C, Sun G, Li S, Shi Y. 2009. A feedback regulatory loop involving microRNA-9 and nuclear receptor TLX in neural stem cell fate determination. Nat Struct Mol Biol 16: 365-371.