-
1
-
-
23044526646
-
'Ome Sweet 'Omics - A genealogical treasury of words
-
Lederberg J, McCray AT. 'Ome Sweet 'Omics - a genealogical treasury of words. Scientist. 2001;15:8.
-
(2001)
Scientist
, vol.15
, pp. 8
-
-
Lederberg, J.1
McCray, A.T.2
-
2
-
-
35348968286
-
The Human Microbiome Project
-
1:CAS:528:DC%2BD2sXhtFOjt7nP 3709439 17943116
-
Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, Gordon JI. The Human Microbiome Project. Nature. 2007;449:804-10.
-
(2007)
Nature
, vol.449
, pp. 804-810
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Hamady, M.3
Fraser-Liggett, C.M.4
Knight, R.5
Gordon, J.I.6
-
3
-
-
84935926197
-
Ten times more microbial cells than body cells in humans?
-
Torres VJ. Ten times more microbial cells than body cells in humans? Microbe Magazine. 2014;9.
-
(2014)
Microbe Magazine
, vol.9
-
-
Torres, V.J.1
-
4
-
-
0023151658
-
Use of the protected specimen brush in patients with endotracheal or tracheostomy tubes
-
1:STN:280:DyaL2s7gsVCktg%3D%3D 3802934
-
Baughman RP, Thorpe JE, Staneck J, Rashkin M, Frame PT. Use of the protected specimen brush in patients with endotracheal or tracheostomy tubes. Chest. 1987;91:233-6.
-
(1987)
Chest
, vol.91
, pp. 233-236
-
-
Baughman, R.P.1
Thorpe, J.E.2
Staneck, J.3
Rashkin, M.4
Frame, P.T.5
-
5
-
-
0029085092
-
Bacterial infection in chronic obstructive pulmonary disease: A study of stable and exacerbated outpatients using the protected specimen brush
-
1:STN:280:DyaK28%2Fitlaisg%3D%3D 7551388
-
Monso E, Ruiz J, Rosell A, Manterola J, Fiz J, Morera J, et al. Bacterial infection in chronic obstructive pulmonary disease: A study of stable and exacerbated outpatients using the protected specimen brush. Am J Respir Crit Care Med. 1995;152:1316-20.
-
(1995)
Am J Respir Crit Care Med
, vol.152
, pp. 1316-1320
-
-
Monso, E.1
Ruiz, J.2
Rosell, A.3
Manterola, J.4
Fiz, J.5
Morera, J.6
Ausina, V.7
-
6
-
-
84907172085
-
Challenges in the culture-independent analysis of oral and respiratory samples from intubated patients
-
4033159 24904840
-
Lazarevic V, Gaïa N, Emonet S, Girard M, Renzi G, Despres L, et al. Challenges in the culture-independent analysis of oral and respiratory samples from intubated patients. Front Cell Infect Microbiol. 2014;4:65.
-
(2014)
Front Cell Infect Microbiol
, vol.4
, pp. 65
-
-
Lazarevic, V.1
Gaïa, N.2
Emonet, S.3
Girard, M.4
Renzi, G.5
Despres, L.6
Wozniak, W.7
Marcos, J.Y.8
Veyrieras, J.9
Chatellier, S.10
Van Belkum, A.11
Pugin, J.12
Schrenzel, J.13
-
7
-
-
84920644670
-
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
-
4228153 25387460
-
Salter S, Cox MJ, Turek EM, Calus ST, Cookson WO, Moffatt MF, et al. Reagent and laboratory contamination can critically impact sequence-based microbiome analyses. BMC Biol. 2014;12:87.
-
(2014)
BMC Biol
, vol.12
, pp. 87
-
-
Salter, S.1
Cox, M.J.2
Turek, E.M.3
Calus, S.T.4
Cookson, W.O.5
Moffatt, M.F.6
Turner, P.7
Parkhill, J.8
Loman, N.9
Walker, A.W.10
-
8
-
-
84935848882
-
The evolving dynamics of the microbial community in the cystic fibrosis lung
-
Epub
-
McGuigan L, Callaghan M: The evolving dynamics of the microbial community in the cystic fibrosis lung. Environ Microbiol 2014. Epub.
-
(2014)
Environ Microbiol
-
-
McGuigan, L.1
Callaghan, M.2
-
9
-
-
84893954530
-
The cystic fibrosis lung microbiome
-
Surette MG. The cystic fibrosis lung microbiome. Ann Am Thorac Soc. 2014;11 Suppl 1:61-5.
-
(2014)
Ann Am Thorac Soc
, vol.11
, pp. 61-65
-
-
Surette, M.G.1
-
11
-
-
84896727156
-
The relationships between environmental bacterial exposure, airway bacterial colonization, and asthma
-
1:CAS:528:DC%2BC2cXjtlyjtL0%3D 4121123 24451910
-
Beigelman A, Weinstock GM, Bacharier LB. The relationships between environmental bacterial exposure, airway bacterial colonization, and asthma. Curr Opin Allergy Clin Immunol. 2014;14:137-42.
-
(2014)
Curr Opin Allergy Clin Immunol
, vol.14
, pp. 137-142
-
-
Beigelman, A.1
Weinstock, G.M.2
Bacharier, L.B.3
-
12
-
-
84901320562
-
Changes in the lung microbiome following lung transplantation include the emergence of two distinct Pseudomonas species with distinct clinical associations
-
4022512 24831685
-
Dickson RP, Erb-Downward JR, Freeman CM, Walker N, Scales BS, Beck JM, et al. Changes in the lung microbiome following lung transplantation include the emergence of two distinct Pseudomonas species with distinct clinical associations. PLoS One. 2014;9:e97214.
-
(2014)
PLoS One
, vol.9
-
-
Dickson, R.P.1
Erb-Downward, J.R.2
Freeman, C.M.3
Walker, N.4
Scales, B.S.5
Beck, J.M.6
Martinez, F.J.7
Curtis, J.L.8
Lama, V.N.9
Huffnagle, G.B.10
-
13
-
-
79960886859
-
Culture enriched molecular profiling of the cystic fibrosis airway microbiome
-
1:CAS:528:DC%2BC3MXhtVOrtL7I 3145661 21829484
-
Sibley CD, Grinwis ME, Field TR, Eshaghurshan CS, Faria MM, Dowd SE, et al. Culture enriched molecular profiling of the cystic fibrosis airway microbiome. PLoS One. 2011;6:e22702.
-
(2011)
PLoS One
, vol.6
-
-
Sibley, C.D.1
Grinwis, M.E.2
Field, T.R.3
Eshaghurshan, C.S.4
Faria, M.M.5
Dowd, S.E.6
Parkins, M.D.7
Rabin, H.R.8
Surette, M.G.9
-
14
-
-
77049098120
-
A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations
-
1:CAS:528:DC%2BC3cXjtF2hsb0%3D
-
Huang YJ, Kim E, Cox MJ, Brodie EL, Brown R, Wiener-Kronish J, et al. A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations. OMICS: a Journal of Integrative Biology. 2010;14:9-59.
-
(2010)
OMICS: A Journal of Integrative Biology
, vol.14
, pp. 9-59
-
-
Huang, Y.J.1
Kim, E.2
Cox, M.J.3
Brodie, E.L.4
Brown, R.5
Wiener-Kronish, J.6
Lynch, S.V.7
-
15
-
-
0032192790
-
Molecular biological access to the chemistry of unknown soil microbes: A new frontier for natural products
-
Handelsman J, Rondon M, Brady S, Clardy J, Goodman R. Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products. Chem Biol. 1998;5:245.
-
(1998)
Chem Biol
, vol.5
, pp. 245
-
-
Handelsman, J.1
Rondon, M.2
Brady, S.3
Clardy, J.4
Goodman, R.5
-
16
-
-
84886188947
-
Microbial ecology in the age of metagenomics
-
F.J. de Bruijn (eds) John Wiley & Sons, Inc Hoboken, NJ, USA
-
Xu J. Microbial ecology in the age of metagenomics. In: de Bruijn FJ, editor. Handbook of Molecular Microbial Ecology I. Hoboken, NJ, USA: John Wiley & Sons, Inc; 2011.
-
(2011)
Handbook of Molecular Microbial Ecology i
-
-
Xu, J.1
-
17
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
1:CAS:528:DC%2BD2cXis1ansLw%3D 15001713
-
Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA, et al. Environmental genome shotgun sequencing of the Sargasso Sea. Science. 2004;304:66-74.
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Halpern, A.L.4
Rusch, D.5
Eisen, J.A.6
Wu, D.7
Paulsen, I.8
Nelson, K.E.9
Nelson, W.10
Fouts, D.E.11
Levy, S.12
Knap, A.H.13
Lomas, M.W.14
Nealson, K.15
White, O.16
Peterson, J.17
Hoffman, J.18
Parsons, R.19
Baden-Tillson, H.20
more..
-
18
-
-
79961035888
-
Microbial diversity and phylogeny: Extending from rRNAs to genomes
-
W-T Liu J.K. Jansson (eds) Caister Academic Press Norfolk, UK
-
Cole JR, Konstantinidis KT, Farris RJ, Tiedje JM. Microbial diversity and phylogeny: Extending from rRNAs to genomes. In: Liu W-T, Jansson JK, editors. Environmental Molecular Microbiology. Norfolk, UK: Caister Academic Press; 2010.
-
(2010)
Environmental Molecular Microbiology
-
-
Cole, J.R.1
Konstantinidis, K.T.2
Farris, R.J.3
Tiedje, J.M.4
-
19
-
-
35148888609
-
Microbial population structures in the deep marine biosphere
-
1:CAS:528:DC%2BD2sXhtFWitbrP 17916733
-
Huber JA, Welch DBM, Morrison HG, Huse SM, Neal PR, Butterfield DA, et al. Microbial population structures in the deep marine biosphere. Science. 2007;318:97-100.
-
(2007)
Science
, vol.318
, pp. 97-100
-
-
Huber, J.A.1
Welch, D.B.M.2
Morrison, H.G.3
Huse, S.M.4
Neal, P.R.5
Butterfield, D.A.6
Sogin, M.L.7
-
20
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored "rare biosphere
-
1:CAS:528:DC%2BD28Xotlyisb4%3D 1524930 16880384
-
Sogin ML, Morrison HG, Huber JA, Welch DM, Huse SM, Neal PR, et al. Microbial diversity in the deep sea and the underexplored "rare biosphere". Proc Natl Acad Sci U S A. 2006;103:12115-20.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 12115-12120
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
Welch, D.M.4
Huse, S.M.5
Neal, P.R.6
Arrieta, J.M.7
Herndl, G.J.8
-
21
-
-
84906272014
-
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
-
1:CAS:528:DC%2BC2cXhtlGnt7vI
-
Yarza P, Yilmaz P, Pruesse E, Glockner FO, Ludwig W, Schleifer K, et al. Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences. Nat Rev Micro. 2014;12:635-45.
-
(2014)
Nat Rev Micro
, vol.12
, pp. 635-645
-
-
Yarza, P.1
Yilmaz, P.2
Pruesse, E.3
Glockner, F.O.4
Ludwig, W.5
Schleifer, K.6
Whitman, W.B.7
Euzeby, J.8
Amann, R.9
Rossello-Mora, R.10
-
22
-
-
84885796893
-
Taxonomic precision of different hypervariable regions of 16S rRNA gene and annotation methods for functional bacterial groups in biological wastewater treatment
-
1:CAS:528:DC%2BC3sXhs1Ois7nN 3797802 24146837
-
Guo F, Ju F, Cai L, Zhang T. Taxonomic precision of different hypervariable regions of 16S rRNA gene and annotation methods for functional bacterial groups in biological wastewater treatment. PLoS One. 2013;8:e76185.
-
(2013)
PLoS One
, vol.8
-
-
Guo, F.1
Ju, F.2
Cai, L.3
Zhang, T.4
-
23
-
-
84904569753
-
Conducting a microbiome study
-
1:CAS:528:DC%2BC2cXhtFyjtLfO 25036628
-
Goodrich JK, Di Rienzi SC, Poole AC, Koren O, Walters WA, Caporaso JG, et al. Conducting a microbiome study. Cell. 2014;158:250-62.
-
(2014)
Cell
, vol.158
, pp. 250-262
-
-
Goodrich, J.K.1
Di Rienzi, S.C.2
Poole, A.C.3
Koren, O.4
Walters, W.A.5
Caporaso, J.G.6
Knight, R.7
Ley, R.E.8
-
24
-
-
84901337103
-
Common contaminants in next-generation sequencing that hinder discovery of low-abundance microbes
-
4023998 24837716
-
Laurence M, Hatzis C, Brash DE. Common contaminants in next-generation sequencing that hinder discovery of low-abundance microbes. PLoS One. 2014;9:e97876.
-
(2014)
PLoS One
, vol.9
-
-
Laurence, M.1
Hatzis, C.2
Brash, D.E.3
-
26
-
-
84893206783
-
Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood
-
Frey KG, Herrera-Galeano JE, Redden CL, Luu TV, Servetas SL, Mateczun AJ, et al. Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood. BMC Genomics. 2014;15:1-30.
-
(2014)
BMC Genomics
, vol.15
, pp. 1-30
-
-
Frey, K.G.1
Herrera-Galeano, J.E.2
Redden, C.L.3
Luu, T.V.4
Servetas, S.L.5
Mateczun, A.J.6
Mokashi, V.P.7
Bishop-Lilly, K.A.8
-
27
-
-
83355173006
-
Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies
-
Schloss PD, Gevers D, Westcott SL. Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS One. 2011;6:1-14.
-
(2011)
PLoS One
, vol.6
, pp. 1-14
-
-
Schloss, P.D.1
Gevers, D.2
Westcott, S.L.3
-
28
-
-
84920714710
-
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
-
4145071 25177538
-
Rideout JR, He Y, Navas-Molina JA, Walters WA, Ursell LK, Gibbons SM, et al. Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences. PeerJ. 2014;2:e545.
-
(2014)
PeerJ
, vol.2
, pp. e545
-
-
Rideout, J.R.1
He, Y.2
Navas-Molina, J.A.3
Walters, W.A.4
Ursell, L.K.5
Gibbons, S.M.6
Chase, J.7
McDonald, D.8
Gonzalez, A.9
Robbins-Pianka, A.10
Clemente, J.C.11
Gilbert, J.A.12
Huse, S.M.13
Zhou, H.14
Knight, R.15
Caporaso, J.G.16
-
29
-
-
79958196766
-
Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis
-
1:CAS:528:DC%2BC3MXns1Sltrg%3D 3126452 21421784
-
Schloss P, Westcott S. Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis. Appl Environ Microbiol. 2011;77:3219-26.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 3219-3226
-
-
Schloss, P.1
Westcott, S.2
-
30
-
-
84862928738
-
A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis
-
3251834 21525143
-
Sun Y, Cai Y, Huse SM, Knight R, Farmerie WG, Wang X, et al. A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis. Brief Bioinform. 2011;13:107-21.
-
(2011)
Brief Bioinform
, vol.13
, pp. 107-121
-
-
Sun, Y.1
Cai, Y.2
Huse, S.M.3
Knight, R.4
Farmerie, W.G.5
Wang, X.6
Mai, V.7
-
31
-
-
84938395898
-
Inconsistent denoising and clustering algorithms for amplicon sequence data
-
10.1089/cmb.2014.0268 25525895
-
Koskinen K, Auvinen P, Björkroth KJ, Hultman J. Inconsistent denoising and clustering algorithms for amplicon sequence data. J Comput Biol. 2014. doi: 10.1089/cmb.2014.0268.
-
(2014)
J Comput Biol
-
-
Koskinen, K.1
Auvinen, P.2
Björkroth, K.J.3
Hultman, J.4
-
32
-
-
72949107142
-
Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
1:CAS:528:DC%2BC3cXis1yltw%3D%3D 2786419 19801464
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, et al. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol. 2009;75:7537-41.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
Sahl, J.W.11
Stres, B.12
Thallinger, G.G.13
Van Horn, D.J.14
Weber, C.F.15
-
33
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
1:CAS:528:DC%2BC3cXksFalurg%3D 3156573 20383131
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010;7:335-6.
-
(2010)
Nat Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Peña, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
Huttley, G.A.11
Kelley, S.T.12
Knights, D.13
Koenig, J.E.14
Ley, R.E.15
Lozupone, C.A.16
McDonald, D.17
Muegge, B.D.18
Pirrung, M.19
Reeder, J.20
Sevinsky, J.R.21
Turnbaugh, P.J.22
Walters, W.A.23
Widmann, J.24
Yatsunenko, T.25
Zaneveld, J.26
Knight, R.27
more..
-
34
-
-
84901363655
-
Waste not, want not: Why rarefying microbiome data is inadmissible
-
3974642 24699258
-
McMurdie PJ, Holmes S. Waste not, want not: Why rarefying microbiome data is inadmissible. PLoS Comput Biol. 2014;10:e1003531.
-
(2014)
PLoS Comput Biol
, vol.10
-
-
McMurdie, P.J.1
Holmes, S.2
-
35
-
-
84888865593
-
Differential abundance analysis for microbial marker-gene surveys
-
1:CAS:528:DC%2BC3sXhsFaksbvP
-
Paulson JN, Stine OC, Bravo HC, Pop M. Differential abundance analysis for microbial marker-gene surveys. Nat Meth. 2013;10:1200-2.
-
(2013)
Nat Meth
, vol.10
, pp. 1200-1202
-
-
Paulson, J.N.1
Stine, O.C.2
Bravo, H.C.3
Pop, M.4
-
36
-
-
33646876613
-
Entropy and diversity
-
Jost L. Entropy and diversity. Oikos. 2006;113:363-75.
-
(2006)
Oikos
, vol.113
, pp. 363-375
-
-
Jost, L.1
-
37
-
-
38449096471
-
Partitioning diversity into independent alpha and beta components
-
18027744
-
Jost L. Partitioning diversity into independent alpha and beta components. Ecology. 2007;88:2427-39.
-
(2007)
Ecology
, vol.88
, pp. 2427-2439
-
-
Jost, L.1
-
38
-
-
80855123561
-
Commentary: Do we have a consistent terminology for species diversity? Yes, if we choose to use it
-
Tuomisto H. Commentary: do we have a consistent terminology for species diversity? Yes, if we choose to use it. Oecologia. 2011;167:903-11.
-
(2011)
Oecologia
, vol.167
, pp. 903-911
-
-
Tuomisto, H.1
-
39
-
-
78650061319
-
Navigating the multiple meanings of beta diversity: A roadmap for the practicing ecologist
-
Anderson M, Crist T, Chase J, Vellend M, Inouye B, Freestone A, et al. Navigating the multiple meanings of beta diversity: a roadmap for the practicing ecologist. Ecol Lett. 2011;14:19-28.
-
(2011)
Ecol Lett
, vol.14
, pp. 19-28
-
-
Anderson, M.1
Crist, T.2
Chase, J.3
Vellend, M.4
Inouye, B.5
Freestone, A.6
Sanders, N.7
Cornell, H.8
Comita, L.9
Davies, K.10
Harrison, S.11
Kraft, N.12
Stegen, J.13
Swenson, N.14
-
40
-
-
77649119443
-
Disordered microbial communities in asthmatic airways
-
2798952 20052417
-
Hilty M, Burke C, Pedro H, Cardenas P, Bush A, Bossley C, et al. Disordered microbial communities in asthmatic airways. PLoS One. 2010;5:e8578.
-
(2010)
PLoS One
, vol.5
-
-
Hilty, M.1
Burke, C.2
Pedro, H.3
Cardenas, P.4
Bush, A.5
Bossley, C.6
Davies, J.7
Ervine, A.8
Poulter, L.9
Pachter, L.10
Moffatt, M.F.11
Cookson, W.O.C.12
-
41
-
-
80053122563
-
Topographical continuity of bacterial populations in the healthy human respiratory tract
-
3208663 21680950
-
Charlson ES, Bittinger K, Haas AR, Fitzgerald AS, Frank I, Yadav A, et al. Topographical continuity of bacterial populations in the healthy human respiratory tract. Am J Respir Crit Care Med. 2011;184:957-63.
-
(2011)
Am J Respir Crit Care Med
, vol.184
, pp. 957-963
-
-
Charlson, E.S.1
Bittinger, K.2
Haas, A.R.3
Fitzgerald, A.S.4
Frank, I.5
Yadav, A.6
Bushman, F.D.7
Collman, R.G.8
-
42
-
-
79952063902
-
Analysis of the lung microbiome in the "healthy" smoker and in COPD
-
1:CAS:528:DC%2BC3MXivVymurc%3D 3043049 21364979
-
Erb-Downward JR, Thompson DL, Han MK, Freeman CM, McCloskey L, Schmidt LA, et al. Analysis of the lung microbiome in the "healthy" smoker and in COPD. PLoS One. 2011;6:e16384.
-
(2011)
PLoS One
, vol.6
-
-
Erb-Downward, J.R.1
Thompson, D.L.2
Han, M.K.3
Freeman, C.M.4
McCloskey, L.5
Schmidt, L.A.6
Young, V.B.7
Toews, G.B.8
Curtis, J.L.9
Sundaram, B.10
Martinez, F.J.11
Huffnagle, G.B.12
-
43
-
-
84866126809
-
Assessing bacterial populations in the lung by replicate analysis of samples from the upper and lower respiratory tracts
-
1:CAS:528:DC%2BC38XhtlGitLfP 3435383 22970118
-
Charlson ES, Bittinger K, Chen J, Diamond JM, Li H, Collman RG, et al. Assessing bacterial populations in the lung by replicate analysis of samples from the upper and lower respiratory tracts. PLoS One. 2012;7:e42786.
-
(2012)
PLoS One
, vol.7
-
-
Charlson, E.S.1
Bittinger, K.2
Chen, J.3
Diamond, J.M.4
Li, H.5
Collman, R.G.6
Bushman, F.D.7
-
44
-
-
84877899252
-
Comparison of the respiratory microbiome in healthy nonsmokers and smokers
-
HIV Lung Microbiome Project 3734620 23491408
-
Morris A, Beck JM, Schloss PD, Campbell TB, Crothers K, Curtis JL, et al. Comparison of the respiratory microbiome in healthy nonsmokers and smokers. Am J Respir Crit Care Med. 2013;187:1067-75.
-
(2013)
Am J Respir Crit Care Med
, vol.187
, pp. 1067-1075
-
-
Morris, A.1
Beck, J.M.2
Schloss, P.D.3
Campbell, T.B.4
Crothers, K.5
Curtis, J.L.6
Flores, S.C.7
Fontenot, A.P.8
Ghedin, E.9
Huang, L.10
Jablonski, K.11
Kleerup, E.12
Lynch, S.V.13
Sodergren, E.14
Twigg, H.15
Young, V.B.16
Bassis, C.M.17
Venkataraman, A.18
Schmidt, T.M.19
Weinstock, G.M.20
more..
-
45
-
-
84924172977
-
Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation
-
3971609 24450871
-
Segal LN, Alekseyenko AV, Clemente JC, Kulkarni R, Wu B, Gao Z, et al. Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation. Microbiome. 2013;1:19.
-
(2013)
Microbiome
, vol.1
, pp. 19
-
-
Segal, L.N.1
Alekseyenko, A.V.2
Clemente, J.C.3
Kulkarni, R.4
Wu, B.5
Gao, Z.6
Chen, H.7
Berger, K.I.8
Goldring, R.M.9
Rom, W.N.10
Blaser, M.J.11
Weiden, M.D.12
-
46
-
-
0030988811
-
Quantitative aspiration during sleep in normal subjects
-
1:STN:280:DyaK2s3ptlKrtQ%3D%3D 9149581
-
Gleeson K, Eggli D, Maxwell S. Quantitative aspiration during sleep in normal subjects. Chest. 1997;111:1266-72.
-
(1997)
Chest
, vol.111
, pp. 1266-1272
-
-
Gleeson, K.1
Eggli, D.2
Maxwell, S.3
-
47
-
-
84867427320
-
The lung microbiome in moderate and severe chronic obstructive pulmonary disease
-
1:CAS:528:DC%2BC38XhsFyhu7vJ 3469539 23071781
-
Pragman AA, Kim HB, Reilly CS, Wendt C, Isaacson RE. The lung microbiome in moderate and severe chronic obstructive pulmonary disease. PLoS One. 2012;7:e47305.
-
(2012)
PLoS One
, vol.7
-
-
Pragman, A.A.1
Kim, H.B.2
Reilly, C.S.3
Wendt, C.4
Isaacson, R.E.5
-
48
-
-
84892556394
-
Influences of the microbiome on the early origins of allergic asthma
-
Marsland BJ. Influences of the microbiome on the early origins of allergic asthma. Ann Am Thorac Soc. 2013;10(Suppl):165-9.
-
(2013)
Ann Am Thorac Soc
, vol.10
, pp. 165-169
-
-
Marsland, B.J.1
-
49
-
-
84929493450
-
Analysis of the upper respiratory tract microbiotas as the source of the lung and gastric microbiotas in healthy individuals
-
4358017 25736890
-
Bassis CM, Erb-Downward JR, Dickson RP, Freeman CM, Schmidt TM, Young VB, et al. Analysis of the upper respiratory tract microbiotas as the source of the lung and gastric microbiotas in healthy individuals. mBio. 2015;6:e00037.
-
(2015)
MBio
, vol.6
-
-
Bassis, C.M.1
Erb-Downward, J.R.2
Dickson, R.P.3
Freeman, C.M.4
Schmidt, T.M.5
Young, V.B.6
Beck, J.M.7
Curtis, J.L.8
Huffnagle, G.B.9
-
50
-
-
84884178416
-
Abundant DNase I-sensitive bacterial DNA in healthy porcine lungs and its implications for the lung microbiome
-
1:CAS:528:DC%2BC3sXhsVygtrjK 3811377 23872563
-
Pezzulo AA, Kelly PH, Nassar BS, Rutland CJ, Gansemer ND, Dohrn CL, et al. Abundant DNase I-sensitive bacterial DNA in healthy porcine lungs and its implications for the lung microbiome. Appl Environ Microbiol. 2013;79:5936-41.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 5936-5941
-
-
Pezzulo, A.A.1
Kelly, P.H.2
Nassar, B.S.3
Rutland, C.J.4
Gansemer, N.D.5
Dohrn, C.L.6
Costello, A.J.7
Stoltz, D.A.8
Zabner, J.9
-
51
-
-
84924094264
-
Application of a neutral community model to assess structuring of the human lung microbiome
-
1:CAS:528:DC%2BC2MXls1Oqs70%3D 4324308 25604788
-
Venkataraman A, Bassis CM, Beck JM, Young VB, Curtis JL, Huffnagle GB, et al. Application of a neutral community model to assess structuring of the human lung microbiome. mBio. 2015;6:e02284-14.
-
(2015)
MBio
, vol.6
, pp. e02284-e022914
-
-
Venkataraman, A.1
Bassis, C.M.2
Beck, J.M.3
Young, V.B.4
Curtis, J.L.5
Huffnagle, G.B.6
Schmidt, T.M.7
-
52
-
-
84877878844
-
Widespread colonization of the lung by Tropheryma whipplei in HIV infection
-
Lung HIV Microbiome Project 3734615 23392441
-
Lozupone C, Cota-Gomez A, Palmer BE, Linderman DJ, Charlson ES, Sodergren E, et al. Widespread colonization of the lung by Tropheryma whipplei in HIV infection. Am J Respir Crit Care Med. 2013;187:1110-7.
-
(2013)
Am J Respir Crit Care Med
, vol.187
, pp. 1110-1117
-
-
Lozupone, C.1
Cota-Gomez, A.2
Palmer, B.E.3
Linderman, D.J.4
Charlson, E.S.5
Sodergren, E.6
Mitreva, M.7
Abubucker, S.8
Martin, J.9
Yao, G.10
Campbell, T.B.11
Flores, S.C.12
Ackerman, G.13
Stombaugh, J.14
Ursell, L.15
Beck, J.M.16
Curtis, J.L.17
Young, V.B.18
Lynch, S.V.19
Huang, L.20
Weinstock, G.M.21
Knox, K.S.22
Twigg, H.23
Morris, A.24
Ghedin, E.25
Bushman, F.D.26
Collman, R.G.27
Knight, R.28
Fontenot, A.P.29
more..
-
54
-
-
84873372370
-
Cystic fibrosis therapy: A community ecology perspective
-
1:CAS:528:DC%2BC3sXitlCqtrk%3D 3604065 23103995
-
Conrad D, Haynes M, Salamon P, Rainey PB, Youle M, Rohwer F. Cystic fibrosis therapy: A community ecology perspective. Am J Respir Cell Mol Biol. 2013;48:150-6.
-
(2013)
Am J Respir Cell Mol Biol
, vol.48
, pp. 150-156
-
-
Conrad, D.1
Haynes, M.2
Salamon, P.3
Rainey, P.B.4
Youle, M.5
Rohwer, F.6
-
55
-
-
79955064481
-
Partitioning core and satellite taxa from within cystic fibrosis lung bacterial communities
-
3105771 21151003
-
van der Gast CJ, Walker AW, Stressmann FA, Rogers GB, Scott P, Daniels TW, et al. Partitioning core and satellite taxa from within cystic fibrosis lung bacterial communities. ISME J. 2011;5:780-91.
-
(2011)
ISME J
, vol.5
, pp. 780-791
-
-
Van Der Gast, C.J.1
Walker, A.W.2
Stressmann, F.A.3
Rogers, G.B.4
Scott, P.5
Daniels, T.W.6
Carroll, M.P.7
Parkhill, J.8
Bruce, K.D.9
-
56
-
-
84866841728
-
The adult cystic fibrosis airway microbiota is stable over time and infection type, and highly resilient to antibiotic treatment of exacerbations
-
1:CAS:528:DC%2BC38XhsVOmu7vL 3458854 23049765
-
Fodor AA, Klem ER, Gilpin DF, Elborn JS, Boucher RC, Tunney MM, et al. The adult cystic fibrosis airway microbiota is stable over time and infection type, and highly resilient to antibiotic treatment of exacerbations. PLoS One. 2012;7:e45001.
-
(2012)
PLoS One
, vol.7
-
-
Fodor, A.A.1
Klem, E.R.2
Gilpin, D.F.3
Elborn, J.S.4
Boucher, R.C.5
Tunney, M.M.6
Wolfgang, M.C.7
-
57
-
-
84901801222
-
Unique microbial communities persist in individual cystic fibrosis patients throughout a clinical exacerbation
-
3971630 24451123
-
Price KE, Hampton TH, Gifford AH, Dolben EL, Hogan DA, Morrison HG, et al. Unique microbial communities persist in individual cystic fibrosis patients throughout a clinical exacerbation. Microbiome. 2013;1:27.
-
(2013)
Microbiome
, vol.1
, pp. 27
-
-
Price, K.E.1
Hampton, T.H.2
Gifford, A.H.3
Dolben, E.L.4
Hogan, D.A.5
Morrison, H.G.6
Sogin, M.L.7
O'Toole, G.A.8
-
58
-
-
84907522276
-
Pyrosequencing reveals transient cystic fibrosis lung microbiome changes with intravenous antibiotics
-
1:CAS:528:DC%2BC2cXitFSitbbJ 25034564
-
Smith DJ, Badrick AC, Zakrzewski M, Krause L, Bell SC, Anderson GJ, et al. Pyrosequencing reveals transient cystic fibrosis lung microbiome changes with intravenous antibiotics. Eur Respir J. 2014;44:922-30.
-
(2014)
Eur Respir J
, vol.44
, pp. 922-930
-
-
Smith, D.J.1
Badrick, A.C.2
Zakrzewski, M.3
Krause, L.4
Bell, S.C.5
Anderson, G.J.6
Reid, D.W.7
-
59
-
-
84865285995
-
Direct sampling of cystic fibrosis lungs indicates that DNA-based analyses of upper-airway specimens can misrepresent lung microbiota
-
1:CAS:528:DC%2BC38XhsVaksr7P 3427132 22872870
-
Goddard AF, Staudinger BJ, Dowd SE, Joshi-Datar A, Wolcott RD, Aitken ML, et al. Direct sampling of cystic fibrosis lungs indicates that DNA-based analyses of upper-airway specimens can misrepresent lung microbiota. Proc Natl Acad Sci U S A. 2012;109:13769-74.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 13769-13774
-
-
Goddard, A.F.1
Staudinger, B.J.2
Dowd, S.E.3
Joshi-Datar, A.4
Wolcott, R.D.5
Aitken, M.L.6
Fligner, C.L.7
Singh, P.K.8
-
60
-
-
84911008014
-
Aspirated bile: A major host trigger modulating respiratory pathogen colonisation in cystic fibrosis patients
-
1:STN:280:DC%2BC2cjhs1Wrsw%3D%3D 4182646 24816901
-
Reen FJ, Woods DF, Mooij MJ, Chróinín MN, Mullane D, Zhou L, et al. Aspirated bile: A major host trigger modulating respiratory pathogen colonisation in cystic fibrosis patients. Eur J Clin Microbiol Infect Dis. 2014;33:1763-71.
-
(2014)
Eur J Clin Microbiol Infect Dis
, vol.33
, pp. 1763-1771
-
-
Reen, F.J.1
Woods, D.F.2
Mooij, M.J.3
Chróinín, M.N.4
Mullane, D.5
Zhou, L.6
Quille, J.7
Fitzpatrick, D.8
Glennon, J.D.9
McGlacken, G.P.10
Adams, C.11
O'Gara, F.12
-
61
-
-
0029907597
-
Evidence-based health policy-lessons from the Global Burden of Disease Study
-
1:CAS:528:DyaK28XmsFKqtro%3D 8966556
-
Murray CJ, Lopez AD. Evidence-based health policy-lessons from the Global Burden of Disease Study. Science. 1996;274:740-3.
-
(1996)
Science
, vol.274
, pp. 740-743
-
-
Murray, C.J.1
Lopez, A.D.2
-
62
-
-
31844435204
-
Chronic obstructive pulmonary disease: Current burden and future projections
-
1:STN:280:DC%2BD28%2Fmslensw%3D%3D 16452599
-
Lopez AD, Shibuya K, Rao C, Mathers CD, Hansell AL, Held LS, et al. Chronic obstructive pulmonary disease: current burden and future projections. Eur Respir J. 2006;27:397-412.
-
(2006)
Eur Respir J
, vol.27
, pp. 397-412
-
-
Lopez, A.D.1
Shibuya, K.2
Rao, C.3
Mathers, C.D.4
Hansell, A.L.5
Held, L.S.6
Schmid, V.7
Buist, S.8
-
64
-
-
69149102202
-
Chronic obstructive pulmonary disease in non-smokers
-
Salvi SS, Barnes PJ. Chronic obstructive pulmonary disease in non-smokers. Lancet. 2009;374:733-43.
-
(2009)
Lancet
, vol.374
, pp. 733-743
-
-
Salvi, S.S.1
Barnes, P.J.2
-
65
-
-
84879973355
-
Analysis of the airway microbiota of healthy individuals and patients with chronic obstructive pulmonary disease by T-RFLP and clone sequencing
-
1:CAS:528:DC%2BC3sXhtFyis7rN 3706416 23874580
-
Zakharkina T, Heinzel E, Koczulla RA, Greulich T, Rentz K, Pauling JK, et al. Analysis of the airway microbiota of healthy individuals and patients with chronic obstructive pulmonary disease by T-RFLP and clone sequencing. PLoS One. 2013;8:e68302.
-
(2013)
PLoS One
, vol.8
-
-
Zakharkina, T.1
Heinzel, E.2
Koczulla, R.A.3
Greulich, T.4
Rentz, K.5
Pauling, J.K.6
Baumbach, J.7
Herrmann, M.8
Grunewald, C.9
Dienemann, H.10
Von Muller, L.11
Bals, R.12
-
66
-
-
84861399683
-
The lung tissue microbiome in chronic obstructive pulmonary disease
-
3359894 22427533
-
Sze MA, Dimitriu PA, Hayashi S, Elliott WM, McDonough JE, Gosselink JV, et al. The lung tissue microbiome in chronic obstructive pulmonary disease. Am J Respir Crit Care Med. 2012;185:1073-80.
-
(2012)
Am J Respir Crit Care Med
, vol.185
, pp. 1073-1080
-
-
Sze, M.A.1
Dimitriu, P.A.2
Hayashi, S.3
Elliott, W.M.4
McDonough, J.E.5
Gosselink, J.V.6
Cooper, J.7
Sin, D.D.8
Mohn, W.W.9
Hogg, J.C.10
-
67
-
-
84867563577
-
Microbiome diversity in the bronchial tracts of patients with chronic obstructive pulmonary disease
-
3486223 22915614
-
Cabrera-Rubio R, Garcia-Nunez M, Seto L, Anto JM, Moya A, Monso E, et al. Microbiome diversity in the bronchial tracts of patients with chronic obstructive pulmonary disease. J Clin Microbiol. 2012;50:3562-8.
-
(2012)
J Clin Microbiol
, vol.50
, pp. 3562-3568
-
-
Cabrera-Rubio, R.1
Garcia-Nunez, M.2
Seto, L.3
Anto, J.M.4
Moya, A.5
Monso, E.6
Mira, A.7
-
68
-
-
84905217349
-
Airway microbiome dynamics in exacerbations of chronic obstructive pulmonary disease
-
4136157 24850358
-
Huang YJ, Sethi S, Murphy T, Nariya S, Boushey HA, Lynch SV. Airway microbiome dynamics in exacerbations of chronic obstructive pulmonary disease. J Clin Microbiol. 2014;52:2813-23.
-
(2014)
J Clin Microbiol
, vol.52
, pp. 2813-2823
-
-
Huang, Y.J.1
Sethi, S.2
Murphy, T.3
Nariya, S.4
Boushey, H.A.5
Lynch, S.V.6
-
69
-
-
79959344460
-
National Asthma Education and Prevention Program Expert Panel Report 3 (EPR-3): Guidelines for the Diagnosis and Management of Asthma-Summary Report 2007
-
NHLBI (National Heart, Lung, and Blood Institute)
-
NHLBI (National Heart, Lung, and Blood Institute). National Asthma Education and Prevention Program Expert Panel Report 3 (EPR-3): Guidelines for the Diagnosis and Management of Asthma-Summary Report 2007. J Allergy Clin Immunol. 2007;120(5):94-138.
-
(2007)
J Allergy Clin Immunol
, vol.120
, Issue.5
, pp. 94-138
-
-
-
70
-
-
84885191350
-
Asthma microbiome studies and the potential for new therapeutic strategies
-
3778058 23709178
-
Huang YJ. Asthma microbiome studies and the potential for new therapeutic strategies. Curr Allergy Asthma Rep. 2013;13:453-61.
-
(2013)
Curr Allergy Asthma Rep
, vol.13
, pp. 453-461
-
-
Huang, Y.J.1
-
72
-
-
40949096946
-
A meta-analysis of the association between Caesarean section and childhood asthma
-
1:STN:280:DC%2BD1c7psFSjsQ%3D%3D 18352976
-
Thavagnanam S, Fleming J, Bromley A, Shields MD, Cardwell CR. A meta-analysis of the association between Caesarean section and childhood asthma. Clin Exp Allergy. 2008;38:629-33.
-
(2008)
Clin Exp Allergy
, vol.38
, pp. 629-633
-
-
Thavagnanam, S.1
Fleming, J.2
Bromley, A.3
Shields, M.D.4
Cardwell, C.R.5
-
73
-
-
78649512314
-
Farm living: Effects on childhood asthma and allergy
-
von Mutius E, Vercelli D. Farm living: Effects on childhood asthma and allergy. Nat Rev Immunol. 2010;10:861-8.
-
(2010)
Nat Rev Immunol
, vol.10
, pp. 861-868
-
-
Von Mutius, E.1
Vercelli, D.2
-
74
-
-
84893940382
-
Environmental microorganisms and lung health
-
von Mutius E. Environmental microorganisms and lung health. Ann Am Thorac Soc. 2014;11 Suppl 1:13-5.
-
(2014)
Ann Am Thorac Soc
, vol.11
, pp. 13-15
-
-
Von Mutius, E.1
-
75
-
-
84874950423
-
The role of early life viral bronchiolitis in the inception of asthma
-
1:CAS:528:DC%2BC3sXjtF2ntrw%3D 3714103 23385289
-
Beigelman A, Bacharier LB. The role of early life viral bronchiolitis in the inception of asthma. Curr Opin Allergy Clin Immunol. 2013;13:211-6.
-
(2013)
Curr Opin Allergy Clin Immunol
, vol.13
, pp. 211-216
-
-
Beigelman, A.1
Bacharier, L.B.2
-
76
-
-
48249118401
-
Helicobacter pylori colonization is inversely associated with childhood asthma
-
3902975 18598192
-
Chen Y, Blaser MJ. Helicobacter pylori colonization is inversely associated with childhood asthma. J Infect Dis. 2008;198:553-60.
-
(2008)
J Infect Dis
, vol.198
, pp. 553-560
-
-
Chen, Y.1
Blaser, M.J.2
-
77
-
-
42549096146
-
Does Helicobacter pylori protect against asthma and allergy?
-
3888205 18194986
-
Blaser MJ, Chen Y, Reibman J. Does Helicobacter pylori protect against asthma and allergy? Gut. 2008;57:561-7.
-
(2008)
Gut
, vol.57
, pp. 561-567
-
-
Blaser, M.J.1
Chen, Y.2
Reibman, J.3
-
78
-
-
63149098836
-
Antibiotic use in children is associated with increased risk of asthma
-
Marra F, Marra CA, Richardson K, Lynd LD, Kozyrskyj A, Patrick DM, et al. Antibiotic use in children is associated with increased risk of asthma. Pediatrics. 2009;123:1003-10.
-
(2009)
Pediatrics
, vol.123
, pp. 1003-1010
-
-
Marra, F.1
Marra, C.A.2
Richardson, K.3
Lynd, L.D.4
Kozyrskyj, A.5
Patrick, D.M.6
Bowie, W.R.7
Fitzgerald, J.M.8
-
79
-
-
79957883289
-
Prenatal or early-life exposure to antibiotics and risk of childhood asthma: A systematic review
-
Murk W, Risnes KR, Bracken MB. Prenatal or early-life exposure to antibiotics and risk of childhood asthma: A systematic review. Pediatrics. 2011;127:1125-38.
-
(2011)
Pediatrics
, vol.127
, pp. 1125-1138
-
-
Murk, W.1
Risnes, K.R.2
Bracken, M.B.3
-
80
-
-
77958452906
-
Vaccination strategies to promote mucosal antibody responses
-
1:CAS:528:DC%2BC3cXhtlGmtLvE 3045856 21029959
-
Chen K, Cerutti A. Vaccination strategies to promote mucosal antibody responses. Immunity. 2010;33:479-91.
-
(2010)
Immunity
, vol.33
, pp. 479-491
-
-
Chen, K.1
Cerutti, A.2
-
81
-
-
84861980130
-
Interactions between the microbiota and the immune system
-
1:CAS:528:DC%2BC38XnvFektL8%3D 4420145 22674334
-
Hooper LV, Littman DR, Macpherson AJ. Interactions between the microbiota and the immune system. Science. 2012;336:1268-73.
-
(2012)
Science
, vol.336
, pp. 1268-1273
-
-
Hooper, L.V.1
Littman, D.R.2
Macpherson, A.J.3
-
83
-
-
0031781980
-
Detection of Mycoplasma pneumoniae in the airways of adults with chronic asthma
-
1:STN:280:DyaK1cvgt1KrtQ%3D%3D 9731038
-
Kraft M, Cassell GH, Henson JE, Watson H, Williamson J, Marmion BP, et al. Detection of Mycoplasma pneumoniae in the airways of adults with chronic asthma. Am J Respir Crit Care Med. 1998;158:998-1001.
-
(1998)
Am J Respir Crit Care Med
, vol.158
, pp. 998-1001
-
-
Kraft, M.1
Cassell, G.H.2
Henson, J.E.3
Watson, H.4
Williamson, J.5
Marmion, B.P.6
Gaydos, C.A.7
Martin, R.J.8
-
84
-
-
0036279989
-
Mycoplasma pneumoniae and Chlamydia pneumoniae in asthma: Effect of clarithromycin
-
1:CAS:528:DC%2BD38XlsVejtbg%3D 12065339
-
Kraft M, Cassell GH, Pak J, Martin J. Mycoplasma pneumoniae and Chlamydia pneumoniae in asthma: Effect of clarithromycin. Chest. 2002;121:1782-8.
-
(2002)
Chest
, vol.121
, pp. 1782-1788
-
-
Kraft, M.1
Cassell, G.H.2
Pak, J.3
Martin, J.4
-
85
-
-
0035093489
-
Persistent airflow limitation in adult-onset nonatopic asthma is associated with serologic evidence of Chlamydia pneumoniae infection
-
ten Brinke A, van Dissel JT, Sterk PJ, Zwinderman AH, Rabe KF, Bel EH. Persistent airflow limitation in adult-onset nonatopic asthma is associated with serologic evidence of Chlamydia pneumoniae infection. J Allergy Clin Immunol. 2001;107:449-54.
-
(2001)
J Allergy Clin Immunol
, vol.107
, pp. 449-454
-
-
Ten Brinke, A.1
Van Dissel, J.T.2
Sterk, P.J.3
Zwinderman, A.H.4
Rabe, K.F.5
Bel, E.H.6
-
86
-
-
0035034606
-
A link between chronic asthma and chronic infection
-
1:STN:280:DC%2BD3M3jslOhtA%3D%3D 11295645
-
Martin RJ, Kraft M, Chu HW, Berns EA, Cassell GH. A link between chronic asthma and chronic infection. J Allergy Clin Immunol. 2001;107:595-601.
-
(2001)
J Allergy Clin Immunol
, vol.107
, pp. 595-601
-
-
Martin, R.J.1
Kraft, M.2
Chu, H.W.3
Berns, E.A.4
Cassell, G.H.5
-
87
-
-
79953187944
-
Chlamydophila pneumoniae, Mycoplasma pneumoniae infections, and asthma control
-
Specjalski K, Jassem E. Chlamydophila pneumoniae, Mycoplasma pneumoniae infections, and asthma control. Allergy Asthma Proc. 2011;32:9-17.
-
(2011)
Allergy Asthma Proc
, vol.32
, pp. 9-17
-
-
Specjalski, K.1
Jassem, E.2
-
88
-
-
35248851540
-
Childhood asthma after bacterial colonization of the airway in neonates
-
1:CAS:528:DC%2BD2sXhtFKmurzK 17928596
-
Bisgaard H, Hermansen MN, Buchvald F, Loland L, Halkjaer LB, Bonnelykke K, et al. Childhood asthma after bacterial colonization of the airway in neonates. N Engl J Med. 2007;357:1487-95.
-
(2007)
N Engl J Med
, vol.357
, pp. 1487-1495
-
-
Bisgaard, H.1
Hermansen, M.N.2
Buchvald, F.3
Loland, L.4
Halkjaer, L.B.5
Bonnelykke, K.6
Brasholt, M.7
Heltberg, A.8
Vissing, N.H.9
Thorsen, S.V.10
Stage, M.11
Pipper, C.B.12
-
89
-
-
77957828103
-
Association of bacteria and viruses with wheezy episodes in young children: Prospective birth cohort study
-
2950260 20921080
-
Bisgaard H, Hermansen MN, Bonnelykke K, Stokholm J, Baty F, Skytt NL, et al. Association of bacteria and viruses with wheezy episodes in young children: prospective birth cohort study. BMJ. 2010;341:c4978.
-
(2010)
BMJ
, vol.341
-
-
Bisgaard, H.1
Hermansen, M.N.2
Bonnelykke, K.3
Stokholm, J.4
Baty, F.5
Skytt, N.L.6
Aniscenko, J.7
Kebadze, T.8
Johnston, S.L.9
-
90
-
-
79551495183
-
Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma
-
3037020 21194740
-
Huang YJ, Nelson CE, Brodie EL, Desantis TZ, Baek MS, Liu J, et al. Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma. J Allergy Clin Immunol. 2011;127:372-81.
-
(2011)
J Allergy Clin Immunol
, vol.127
, pp. 372-381
-
-
Huang, Y.J.1
Nelson, C.E.2
Brodie, E.L.3
Desantis, T.Z.4
Baek, M.S.5
Liu, J.6
Woyke, T.7
Allgaier, M.8
Bristow, J.9
Wiener-Kronish, J.P.10
Sutherland, E.R.11
King, T.S.12
Icitovic, N.13
Martin, R.J.14
Calhoun, W.J.15
Castro, M.16
Denlinger, L.C.17
Dimango, E.18
Kraft, M.19
Peters, S.P.20
Wasserman, S.I.21
Wechsler, M.E.22
Boushey, H.A.23
Lynch, S.V.24
more..
-
91
-
-
84873405282
-
Asthma associated differences in microbial composition of induced sputum
-
1:CAS:528:DC%2BC38XhvFWhsLrP 4403876 23265859
-
Marri PR, Stern DA, Wright AL, Billheimer D, Martinez FD. Asthma associated differences in microbial composition of induced sputum. J Allergy Clin Immunol. 2013;131:346-52.
-
(2013)
J Allergy Clin Immunol
, vol.131
, pp. 346-352
-
-
Marri, P.R.1
Stern, D.A.2
Wright, A.L.3
Billheimer, D.4
Martinez, F.D.5
-
92
-
-
84887923275
-
The effects of airway microbiome on corticosteroid responsiveness in asthma
-
1:CAS:528:DC%2BC3sXhvF2kur3I 3863730 24024497
-
Goleva E, Jackson LP, Harris JK, Robertson CE, Sutherland ER, Hall CF, et al. The effects of airway microbiome on corticosteroid responsiveness in asthma. Am J Respir Crit Care Med. 2013;188:1193-201.
-
(2013)
Am J Respir Crit Care Med
, vol.188
, pp. 1193-1201
-
-
Goleva, E.1
Jackson, L.P.2
Harris, J.K.3
Robertson, C.E.4
Sutherland, E.R.5
Hall, C.F.6
Good, J.T.7
Gelfand, E.W.8
Martin, R.J.9
Leung, D.Y.M.10
-
93
-
-
84873244728
-
Differences in fungi present in induced sputum samples from asthma patients and non-atopic controls: A community based case control study
-
3570489 23384395
-
van Woerden HC, Gregory C, Brown R, Marchesi JR, Hoogendoorn B, Matthews IP. Differences in fungi present in induced sputum samples from asthma patients and non-atopic controls: a community based case control study. BMC Infect Dis. 2013;13:69.
-
(2013)
BMC Infect Dis
, vol.13
, pp. 69
-
-
Van Woerden, H.C.1
Gregory, C.2
Brown, R.3
Marchesi, J.R.4
Hoogendoorn, B.5
Matthews, I.P.6
-
94
-
-
84902147234
-
The impact of azithromycin therapy on the airway microbiota in asthma
-
4078717 24287164
-
Slater M, Rivett DW, Williams L, Martin M, Harrison T, Sayers I, et al. The impact of azithromycin therapy on the airway microbiota in asthma. Thorax. 2014;69:673-4.
-
(2014)
Thorax
, vol.69
, pp. 673-674
-
-
Slater, M.1
Rivett, D.W.2
Williams, L.3
Martin, M.4
Harrison, T.5
Sayers, I.6
Bruce, K.D.7
Shaw, D.8
-
95
-
-
84866429095
-
Lung-enriched organisms and aberrant bacterial and fungal respiratory microbiota after lung transplant
-
3480531 22798321
-
Charlson ES, Diamond JM, Bittinger K, Fitzgerald AS, Yadav A, Haas AR, et al. Lung-enriched organisms and aberrant bacterial and fungal respiratory microbiota after lung transplant. Am J Respir Crit Care Med. 2012;186:536-45.
-
(2012)
Am J Respir Crit Care Med
, vol.186
, pp. 536-545
-
-
Charlson, E.S.1
Diamond, J.M.2
Bittinger, K.3
Fitzgerald, A.S.4
Yadav, A.5
Haas, A.R.6
Bushman, F.D.7
Collman, R.G.8
-
96
-
-
84872367788
-
Longitudinal analysis of the lung microbiome in lung transplantation
-
1:CAS:528:DC%2BC3sXjsFKqu7g%3D 3546157 23173619
-
Borewicz K, Pragman AA, Kim HB, Hertz M, Wendt C, Isaacson RE. Longitudinal analysis of the lung microbiome in lung transplantation. FEMS Microbiol Lett. 2013;339:57-65.
-
(2013)
FEMS Microbiol Lett
, vol.339
, pp. 57-65
-
-
Borewicz, K.1
Pragman, A.A.2
Kim, H.B.3
Hertz, M.4
Wendt, C.5
Isaacson, R.E.6
-
97
-
-
84875148797
-
Re-establishment of recipient-associated microbiota in the lung allograft is linked to reduced risk of bronchiolitis obliterans syndrome
-
1:CAS:528:DC%2BC3sXlslygu70%3D 23328523
-
Willner DL, Hugenholtz P, Yerkovich ST, Tan ME, Daly JN, Lachner N, et al. Re-establishment of recipient-associated microbiota in the lung allograft is linked to reduced risk of bronchiolitis obliterans syndrome. Am J Respir Crit Care Med. 2013;187:640-7.
-
(2013)
Am J Respir Crit Care Med
, vol.187
, pp. 640-647
-
-
Willner, D.L.1
Hugenholtz, P.2
Yerkovich, S.T.3
Tan, M.E.4
Daly, J.N.5
Lachner, N.6
Hopkins, P.7
Chambers, D.C.8
-
98
-
-
84865176424
-
Oral and airway microbiota in HIV-infected pneumonia patients
-
1:CAS:528:DC%2BC38XhsVarsbvJ 3421777 22760045
-
Iwai S, Fei M, Huang D, Fong S, Subramanian A, Grieco K, et al. Oral and airway microbiota in HIV-infected pneumonia patients. J Clin Microbiol. 2012;50:2995-3002.
-
(2012)
J Clin Microbiol
, vol.50
, pp. 2995-3002
-
-
Iwai, S.1
Fei, M.2
Huang, D.3
Fong, S.4
Subramanian, A.5
Grieco, K.6
Lynch, S.V.7
Huang, L.8
-
99
-
-
84902125525
-
Metabolomics of bronchoalveolar lavage differentiate healthy HIV-1-infected subjects from controls
-
1:CAS:528:DC%2BC2cXpsVelsrw%3D 4046199 24417396
-
Cribbs SK, Park Y, Guidot DM, Martin GS, Brown LA, Lennox J, et al. Metabolomics of bronchoalveolar lavage differentiate healthy HIV-1-infected subjects from controls. AIDS Res Hum Retroviruses. 2014;30:579-85.
-
(2014)
AIDS Res Hum Retroviruses
, vol.30
, pp. 579-585
-
-
Cribbs, S.K.1
Park, Y.2
Guidot, D.M.3
Martin, G.S.4
Brown, L.A.5
Lennox, J.6
Jones, D.P.7
-
100
-
-
84899678439
-
The lung microbiome of Ugandan HIV-infected pneumonia patients is compositionally and functionally distinct from that of San Franciscan patients
-
3994144 24752365
-
Iwai S, Huang D, Fong S, Jarlsberg LG, Worodria W, Yoo S, et al. The lung microbiome of Ugandan HIV-infected pneumonia patients is compositionally and functionally distinct from that of San Franciscan patients. PLoS One. 2014;9:e95726.
-
(2014)
PLoS One
, vol.9
-
-
Iwai, S.1
Huang, D.2
Fong, S.3
Jarlsberg, L.G.4
Worodria, W.5
Yoo, S.6
Cattamanchi, A.7
Davis, J.L.8
Kaswabuli, S.9
Segal, M.10
Huang, L.11
Lynch, S.V.12
-
101
-
-
84877918651
-
Lung microbiota and bacterial abundance in patients with bronchiectasis when clinically stable and during exacerbation
-
3734618 23348972
-
Tunney MM, Einarsson GG, Wei L, Drain M, Klem ER, Cardwell C, et al. Lung microbiota and bacterial abundance in patients with bronchiectasis when clinically stable and during exacerbation. Am J Respir Crit Care Med. 2013;187:1118-26.
-
(2013)
Am J Respir Crit Care Med
, vol.187
, pp. 1118-1126
-
-
Tunney, M.M.1
Einarsson, G.G.2
Wei, L.3
Drain, M.4
Klem, E.R.5
Cardwell, C.6
Ennis, M.7
Boucher, R.C.8
Wolfgang, M.C.9
Elborn, J.S.10
-
102
-
-
84879963088
-
Clinical measures of disease in adult non-CF bronchiectasis correlate with airway microbiota composition
-
Rogers GB, van der Gast CJ, Cuthbertson L, Thomson SK, Bruce KD, Martin ML, et al. Clinical measures of disease in adult non-CF bronchiectasis correlate with airway microbiota composition. Thorax. 2013;68:731-7.
-
(2013)
Thorax
, vol.68
, pp. 731-737
-
-
Rogers, G.B.1
Van Der Gast, C.J.2
Cuthbertson, L.3
Thomson, S.K.4
Bruce, K.D.5
Martin, M.L.6
Serisier, D.J.7
-
103
-
-
84903478837
-
A novel microbiota stratification system predicts future exacerbations in bronchiectasis
-
Rogers GB, Zain NMM, Bruce KD, Burr LD, Chen AC, Rivett DW, et al. A novel microbiota stratification system predicts future exacerbations in bronchiectasis. Ann Am Thorac Soc. 2014;11:496-503.
-
(2014)
Ann Am Thorac Soc
, vol.11
, pp. 496-503
-
-
Rogers, G.B.1
Zain, N.M.M.2
Bruce, K.D.3
Burr, L.D.4
Chen, A.C.5
Rivett, D.W.6
McGuckin, M.A.7
Serisier, D.J.8
-
104
-
-
84903993583
-
Lung microbiome and disease progression in idiopathic pulmonary fibrosis: An analysis of the COMET study
-
Han M, Zhou Y, Murray S, Tayob N, Noth I, Lama V, et al. Lung microbiome and disease progression in idiopathic pulmonary fibrosis: an analysis of the COMET study. Lancet Respir Med. 2014;2:548-56.
-
(2014)
Lancet Respir Med
, vol.2
, pp. 548-556
-
-
Han, M.1
Zhou, Y.2
Murray, S.3
Tayob, N.4
Noth, I.5
Lama, V.6
Moore, B.7
White, E.8
Flaherty, K.9
Huffnagle, G.10
Martinez, F.11
-
105
-
-
84918777951
-
The role of bacteria in the pathogenesis and progression of idiopathic pulmonary fibrosis
-
1:CAS:528:DC%2BC2cXitVyiur%2FF 4299577 25184687
-
Molyneaux P, Cox M, Willis-Owen S, Mallia P, Russell K, Russel A, et al. The role of bacteria in the pathogenesis and progression of idiopathic pulmonary fibrosis. Am J Respir Crit Care Med. 2014;190:906-13.
-
(2014)
Am J Respir Crit Care Med
, vol.190
, pp. 906-913
-
-
Molyneaux, P.1
Cox, M.2
Willis-Owen, S.3
Mallia, P.4
Russell, K.5
Russel, A.6
Murphy, E.7
Johnston, S.8
Schwartz, D.9
Wells, A.10
Cookson, W.11
Maher, T.12
Moffatt, M.13
-
106
-
-
84872854805
-
Sputum microbiota in tuberculosis as revealed by 16S rRNA pyrosequencing
-
1:CAS:528:DC%2BC3sXit1ChsLg%3D 3554703 23365674
-
Cheung MK, Lam WY, Fung WYW, Law PTW, Au CH, Nong W, et al. Sputum microbiota in tuberculosis as revealed by 16S rRNA pyrosequencing. PLoS One. 2013;8:e54574.
-
(2013)
PLoS One
, vol.8
-
-
Cheung, M.K.1
Lam, W.Y.2
Fung, W.Y.W.3
Law, P.T.W.4
Au, C.H.5
Nong, W.6
Kam, K.M.7
Kwan, H.S.8
Tsui, S.K.W.9
-
107
-
-
84887435078
-
Microbial communities in the respiratory tract of patients with interstitial lung disease
-
3841796 23945167
-
Garzoni C, Brugger SD, Qi W, Wasmer S, Cusini A, Dumont P, et al. Microbial communities in the respiratory tract of patients with interstitial lung disease. Thorax. 2013;68:1150-6.
-
(2013)
Thorax
, vol.68
, pp. 1150-1156
-
-
Garzoni, C.1
Brugger, S.D.2
Qi, W.3
Wasmer, S.4
Cusini, A.5
Dumont, P.6
Gorgievski-Hrisoho, M.7
Mühlemann, K.8
Von Garnier, C.9
Hilty, M.10
-
108
-
-
84896871488
-
Environmental arsenic exposure and microbiota in induced sputum
-
3945600 24566055
-
White AG, Watts GS, Lu Z, Meza-Montenegro MM, Lutz EA, Harber P, et al. Environmental arsenic exposure and microbiota in induced sputum. Int J Environ Res Public Health. 2014;11:2299-313.
-
(2014)
Int J Environ Res Public Health
, vol.11
, pp. 2299-2313
-
-
White, A.G.1
Watts, G.S.2
Lu, Z.3
Meza-Montenegro, M.M.4
Lutz, E.A.5
Harber, P.6
Burgess, J.L.7
-
109
-
-
84866857898
-
Quantitative analysis of the human airway microbial ecology reveals a pervasive signature for cystic fibrosis
-
Blainey PC, Milla CE, Cornfield DN, Quake SR. Quantitative analysis of the human airway microbial ecology reveals a pervasive signature for cystic fibrosis. Sci Transl Med. 2012;4:53ra130.
-
(2012)
Sci Transl Med
, vol.4
-
-
Blainey, P.C.1
Milla, C.E.2
Cornfield, D.N.3
Quake, S.R.4
-
110
-
-
84876999613
-
Inflammation and airway microbiota during cystic fibrosis pulmonary exacerbations
-
1:CAS:528:DC%2BC3sXnsVKhu74%3D 3639911 23646159
-
Zemanick ET, Harris JK, Wagner BD, Robertson CE, Sagel SD, Stevens MJ, et al. Inflammation and airway microbiota during cystic fibrosis pulmonary exacerbations. PLoS One. 2013;8:e62917.
-
(2013)
PLoS One
, vol.8
-
-
Zemanick, E.T.1
Harris, J.K.2
Wagner, B.D.3
Robertson, C.E.4
Sagel, S.D.5
Stevens, M.J.6
Accurso, F.J.7
Laguna, T.A.8
-
111
-
-
84875364582
-
Reducing bias in bacterial community analysis of lower respiratory infections
-
1:CAS:528:DC%2BC3sXksVKmtb0%3D 3603400 23190732
-
Rogers GB, Cuthbertson L, Hoffman LR, Wing PAC, Pope C, Hooftman DAP, et al. Reducing bias in bacterial community analysis of lower respiratory infections. ISME J. 2013;7:697-706.
-
(2013)
ISME J
, vol.7
, pp. 697-706
-
-
Rogers, G.B.1
Cuthbertson, L.2
Hoffman, L.R.3
Wing, P.A.C.4
Pope, C.5
Hooftman, D.A.P.6
Lilley, A.K.7
Oliver, A.8
Carroll, M.P.9
Bruce, K.D.10
Van Der Gast, C.J.11
-
112
-
-
84907060662
-
Three clinically distinct chronic pediatric airway infections share a common core microbiota
-
van der Gast CJ, Cuthbertson L, Rogers GB, Pope C, Marsh RL, Redding GJ, et al. Three clinically distinct chronic pediatric airway infections share a common core microbiota. Ann Am Thorac Soc. 2014;11:1039-48.
-
(2014)
Ann Am Thorac Soc
, vol.11
, pp. 1039-1048
-
-
Van Der Gast, C.J.1
Cuthbertson, L.2
Rogers, G.B.3
Pope, C.4
Marsh, R.L.5
Redding, G.J.6
Bruce, K.D.7
Chang, A.B.8
Hoffman, L.R.9
-
113
-
-
75549083380
-
Reducing the impact of PCR-mediated recombination in molecular evolution and environmental studies using a new-generation high-fidelity DNA polymerase
-
1:CAS:528:DC%2BD1MXht1ygtrfJ 19852769
-
Lahr DJ, Katz LA. Reducing the impact of PCR-mediated recombination in molecular evolution and environmental studies using a new-generation high-fidelity DNA polymerase. Biotechniques. 2009;47:857-66.
-
(2009)
Biotechniques
, vol.47
, pp. 857-866
-
-
Lahr, D.J.1
Katz, L.A.2
|