-
1
-
-
77954834323
-
Bacterial diversity in the oral cavity of 10 healthy individuals
-
Bik EM, et al. 2010. Bacterial diversity in the oral cavity of 10 healthy individuals. ISME J. 4:962-974.
-
(2010)
ISME J.
, vol.4
, pp. 962-974
-
-
Bik, E.M.1
-
2
-
-
0031026793
-
Chryseobacterium meningosepticum: An emerging pathogen among immunocompromised adults
-
DOI 10.1097/00005792-199701000-00003
-
Bloch KC, Nadarajah R, Jacobs R. 1997. Chryseobacterium meningosepticum: an emerging pathogen among immunocompromised adults. Report of 6 cases and literature review. Medicine (Baltimore) 76:30-41. (Pubitemid 27074740)
-
(1997)
Medicine
, vol.76
, Issue.1
, pp. 30-41
-
-
Bloch, K.C.1
Nadarajah, R.2
Jacobs, R.3
-
3
-
-
0000286531
-
An ordination of upland forest communities of southern Wisconsin
-
Bray JR, Curtis JT. 1957. An ordination of upland forest communities of southern Wisconsin. Ecol. Monogr. 27:325-349.
-
(1957)
Ecol. Monogr.
, vol.27
, pp. 325-349
-
-
Bray, J.R.1
Curtis, J.T.2
-
4
-
-
33748805463
-
Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation
-
DOI 10.1128/AEM.00246-06
-
Brodie EL, et al. 2006. Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Appl. Environ. Microbiol. 72:6288-6298. (Pubitemid 44414663)
-
(2006)
Applied and Environmental Microbiology
, vol.72
, Issue.9
, pp. 6288-6298
-
-
Brodie, E.L.1
DeSantis, T.Z.2
Joyner, D.C.3
Baek, S.M.4
Larsen, J.T.5
Andersen, G.L.6
Hazen, T.C.7
Richardson, P.M.8
Herman, D.J.9
Tokunaga, T.K.10
Wan, J.M.11
Firestone, M.K.12
-
5
-
-
80053122563
-
Topographical continuity of bacterial populations in the healthy human respiratory tract
-
Charlson ES, et al. 2011. Topographical continuity of bacterial populations in the healthy human respiratory tract. Am. J. Respir. Crit. Care Med. 184:957-963.
-
(2011)
Am. J. Respir. Crit. Care Med.
, vol.184
, pp. 957-963
-
-
Charlson, E.S.1
-
6
-
-
0033772562
-
Atypical Chryseobacterium meningosepticum and meningitis and sepsis in newborns and the immunocompromised
-
Chiu CH, Waddingdon M, Greenberg D, Schreckenberger PC, Carnahan AM. 2000. Atypical Chryseobacterium meningosepticum and meningitis and sepsis in newborns and the immunocompromised, Taiwan. Emerg. Infect. Dis. 6:481-486.
-
(2000)
Taiwan. Emerg. Infect. Dis.
, vol.6
, pp. 481-486
-
-
Chiu, C.H.1
Waddingdon, M.2
Greenberg, D.3
Schreckenberger, P.C.4
Carnahan, A.M.5
-
7
-
-
47649120745
-
Utility of DNA microarrays for detection of viruses in acute respiratory tract infections in children
-
Chiu CY, et al. 2008. Utility of DNA microarrays for detection of viruses in acute respiratory tract infections in children. J. Pediatr. 153:76-83.
-
(2008)
J. Pediatr.
, vol.153
, pp. 76-83
-
-
Chiu, C.Y.1
-
8
-
-
58149200948
-
The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis
-
Cole JR, et al. 2009. The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res. 37:D141-D145.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Cole, J.R.1
-
9
-
-
72949091232
-
Bacterial community variation in human body habitats across space and time
-
Costello EK, et al. 2009. Bacterial community variation in human body habitats across space and time. Science 326:1694-1697.
-
(2009)
Science
, vol.326
, pp. 1694-1697
-
-
Costello, E.K.1
-
10
-
-
77955292433
-
Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients
-
doi:10.1371/journal.pone.0011044
-
Cox MJ, et al. 2010. Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients. PLoS One 5:e11044. doi:10.1371/journal. pone.0011044.
-
(2010)
PLoS One
, vol.5
-
-
Cox, M.J.1
-
11
-
-
77649323279
-
Lactobacillus casei abundance is associated with profound shifts in the infant gut microbiome
-
doi:10.1371/journal.pone.0008745
-
Cox MJ, et al. 2010. Lactobacillus casei abundance is associated with profound shifts in the infant gut microbiome. PLoS One 5:e8745. doi:10.1371/journal.pone.0008745.
-
(2010)
PLoS One
, vol.5
-
-
Cox, M.J.1
-
12
-
-
69249144453
-
Recurrent community-associated methicillin-resistant Staphylococcus aureus infections among HIV-infected persons: Incidence and risk factors
-
Crum-Cianflone N, Weekes J, Bavaro M. 2009. Recurrent community-associated methicillin-resistant Staphylococcus aureus infections among HIV-infected persons: incidence and risk factors. AIDS Patient Care STDs 23:499-502.
-
(2009)
AIDS Patient Care STDs
, vol.23
, pp. 499-502
-
-
Crum-Cianflone, N.1
Weekes, J.2
Bavaro, M.3
-
13
-
-
34248159346
-
High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment
-
DOI 10.1007/s00248-006-9134-9
-
DeSantis TZ, et al. 2007. High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment. Microb. Ecol. 53:371-383. (Pubitemid 46716624)
-
(2007)
Microbial Ecology
, vol.53
, Issue.3
, pp. 371-383
-
-
DeSantis, T.Z.1
Brodie, E.L.2
Moberg, J.P.3
Zubieta, I.X.4
Piceno, Y.M.5
Andersen, G.L.6
-
14
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DOI 10.1128/AEM.03006-05
-
DeSantis TZ, et al. 2006. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl. Environ. Microbiol. 72:5069-5072. (Pubitemid 44078840)
-
(2006)
Applied and Environmental Microbiology
, vol.72
, Issue.7
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
Huber, T.7
Dalevi, D.8
Hu, P.9
Andersen, G.L.10
-
15
-
-
20644441792
-
HIV infection associated with Strongyloides stercoralis colitis resulting in Streptococcus bovis bacteraemia and meningitis
-
DOI 10.1136/sti.2004.012393
-
de Silva T, Raychaudhuri M, Poulton M. 2005. HIV infection associated with Strongyloides stercoralis colitis resulting in Streptococcus bovis bacteraemia and meningitis. Sex. Transm. Infect. 81:276-277. (Pubitemid 40835060)
-
(2005)
Sexually Transmitted Infections
, vol.81
, Issue.3
, pp. 276-277
-
-
De Silva, T.1
Raychaudhuri, M.2
Poulton, M.3
-
16
-
-
67249119415
-
Implication of the mosquito midgut microbiota in the defense against malaria parasites
-
doi:10.1371/journal.ppat.1000423
-
Dong Y, Manfredini F, Dimopoulos G. 2009. Implication of the mosquito midgut microbiota in the defense against malaria parasites. PLoS Pathogens 5:e1000423. doi:10.1371/journal.ppat.1000423.
-
(2009)
PLoS Pathogens
, vol.5
-
-
Dong, Y.1
Manfredini, F.2
Dimopoulos, G.3
-
17
-
-
0346887122
-
Modulation of Pseudomonas aeruginosa gene expression by host microflora through interspecies communication
-
DOI 10.1046/j.1365-2958.2003.03803.x
-
Duan K, Dammel C, Stein J, Rabin H, Surette MG. 2003. Modulation of Pseudomonas aeruginosa gene expression by host microflora through interspecies communication. Mol. Microbiol. 50:1477-1491. (Pubitemid 38010446)
-
(2003)
Molecular Microbiology
, vol.50
, Issue.5
, pp. 1477-1491
-
-
Duan, K.1
Dammel, C.2
Stein, J.3
Rabin, H.4
Surette, M.G.5
-
18
-
-
42449095289
-
Enumeration of Archaea and Bacteria in seafloor basalt using real-time quantitative PCR and fluorescence microscopy
-
DOI 10.1111/j.1574-6968.2008.01119.x
-
Einen J, Thorseth IH, Ovreas L. 2008. Enumeration of Archaea and Bacteria in seafloor basalt using real-time quantitative PCR and fluorescence microscopy. FEMS Microbiol. Lett. 282:182-187. (Pubitemid 351569454)
-
(2008)
FEMS Microbiology Letters
, vol.282
, Issue.2
, pp. 182-187
-
-
Einen, J.1
Thorseth, I.H.2
Ovreas, L.3
-
19
-
-
79952063902
-
Analysis of the lung microbiome in the "healthy" smoker and in COPD
-
doi:10.1371/journal.pone.0016384
-
Erb-Downward JR, et al. 2011. Analysis of the lung microbiome in the "healthy" smoker and in COPD. PLoS One 6:e16384. doi:10.1371/journal. pone.0016384.
-
(2011)
PLoS One
, vol.6
-
-
Erb-Downward, J.R.1
-
20
-
-
34250622826
-
Loss of bacterial diversity during antibiotic treatment of intubated patients colonized with Pseudomonas aeruginosa
-
DOI 10.1128/JCM.02187-06
-
Flanagan JL, et al. 2007. Loss of bacterial diversity during antibiotic treatment of intubated patients colonized with Pseudomonas aeruginosa. J. Clin. Microbiol. 45:1954-1962. (Pubitemid 46933932)
-
(2007)
Journal of Clinical Microbiology
, vol.45
, Issue.6
, pp. 1954-1962
-
-
Flanagan, J.L.1
Brodie, E.L.2
Weng, L.3
Lynch, S.V.4
Garcia, O.5
Brown, R.6
Hugenholtz, P.7
DeSantis, T.Z.8
Andersen, G.L.9
Wiener-Kronish, J.P.10
Bristow, J.11
-
21
-
-
13944258421
-
+ T-cell restoration and enhanced gene expression regulating mucosal repair and regeneration
-
DOI 10.1128/JVI.79.5.2709-2719.2005
-
George MD, Reay E, Sankaran S, Dandekar S. 2005. Early antiretroviral therapy for simian immunodeficiency virus infection leads to mucosal CD4+ T-cell restoration and enhanced gene expression regulating mucosal repair and regeneration. J. Virol. 79:2709-2719. (Pubitemid 40270549)
-
(2005)
Journal of Virology
, vol.79
, Issue.5
, pp. 2709-2719
-
-
George, M.D.1
Reay, E.2
Sankaran, S.3
Dandekar, S.4
-
22
-
-
77649119443
-
Disordered microbial communities in asthmatic airways
-
doi:10.1371/journal.pone.0008578
-
Hilty M, et al. 2010. Disordered microbial communities in asthmatic airways. PLoS One 5:e8578. doi:10.1371/journal.pone.0008578.
-
(2010)
PLoS One
, vol.5
-
-
Hilty, M.1
-
23
-
-
77049098120
-
A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations
-
Huang YJ, et al. 2010. A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations. Omics 14:9-59.
-
(2010)
Omics
, vol.14
, pp. 9-59
-
-
Huang, Y.J.1
-
24
-
-
79551495183
-
Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma
-
Huang YJ, et al. 2011. Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma. J. Allergy Clin. Immunol. 127:372-381.
-
(2011)
J. Allergy Clin. Immunol.
, vol.127
, pp. 372-381
-
-
Huang, Y.J.1
-
25
-
-
53349173070
-
Specific microbiota direct the differentiation of IL-17-producing T-helper cells in the mucosa of the small intestine
-
Ivanov II, et al. 2008. Specific microbiota direct the differentiation of IL-17-producing T-helper cells in the mucosa of the small intestine. Cell Host Microbe 4:337-349.
-
(2008)
Cell Host Microbe
, vol.4
, pp. 337-349
-
-
Ivanov, I.I.1
-
26
-
-
0028010049
-
Streptococcus bovis bacteremia and meningitis associated with Strongyloides stercoralis colitis in a patient infected with human immunodeficiency virus
-
Jain AK, Agarwal SK, el-Sadr W. 1994. Streptococcus bovis bacteremia and meningitis associated with Strongyloides stercoralis colitis in a patient infected with human immunodeficiency virus. Clin. Infect. Dis. 18:253-254. (Pubitemid 24055270)
-
(1994)
Clinical Infectious Diseases
, vol.18
, Issue.2
, pp. 253-254
-
-
Jain, A.K.1
Agarwal, S.K.2
El-Sadr, W.3
-
27
-
-
0026322102
-
Fluconazole prophylaxis of recurrent oral candidiasis in HIV-positive patients
-
Just-Nubling G, et al. 1991. Fluconazole prophylaxis of recurrent oral candidiasis in HIV-positive patients. Eur. J. Clin. Microbiol. Infect. Dis. 10:917-921.
-
(1991)
Eur. J. Clin. Microbiol. Infect. Dis.
, vol.10
, pp. 917-921
-
-
Just-Nubling, G.1
-
28
-
-
58149218590
-
Pyrosequencing analysis of the oral microflora of healthy adults
-
Keijser BJF, et al. 2008. Pyrosequencing analysis of the oral microflora of healthy adults. J. Dent. Res. 87:1016-1020.
-
(2008)
J. Dent. Res.
, vol.87
, pp. 1016-1020
-
-
Keijser, B.J.F.1
-
30
-
-
69049108796
-
Antibiotic treatment of clostridium difficile carrier mice triggers a supershedder state, spore-mediated transmission, and severe disease in immunocompromised hosts
-
Lawley TD, et al. 2009. Antibiotic treatment of clostridium difficile carrier mice triggers a supershedder state, spore-mediated transmission, and severe disease in immunocompromised hosts. Infect. Immun. 77:3661-3669.
-
(2009)
Infect. Immun.
, vol.77
, pp. 3661-3669
-
-
Lawley, T.D.1
-
31
-
-
78650857856
-
Comparative analyses of the bacterial microbiota of the human nostril and oropharynx
-
doi:10.1128/mBio.00129-10
-
Lemon KP, et al. 2010. Comparative analyses of the bacterial microbiota of the human nostril and oropharynx. mBio 1:e00129-10. doi:10.1128/mBio.00129- 10.
-
(2010)
MBio
, vol.1
-
-
Lemon, K.P.1
-
32
-
-
0036615692
-
Oral health and respiratory infection
-
Mojon P. 2002. Oral health and respiratory infection. J. Can. Dent. Assoc. 68:340-345.
-
(2002)
J. Can. Dent. Assoc.
, vol.68
, pp. 340-345
-
-
Mojon, P.1
-
33
-
-
68649113028
-
Vegan: Community Ecology Package
-
version 1.17-3
-
Oksanen J, et al. 2010. vegan: Community Ecology Package. R package version 1.17-3. http://CRAN.R-project.org/package=vegan.
-
(2010)
R Package
-
-
Oksanen, J.1
-
34
-
-
70449713952
-
The NIH Human Microbiome Project
-
Peterson J, et al. 2009. The NIH Human Microbiome Project. Genome Res. 19:2317-2323.
-
(2009)
Genome Res.
, vol.19
, pp. 2317-2323
-
-
Peterson, J.1
-
35
-
-
79951480123
-
-
R Development Core Team. R Foundation for Statistical Computing, Vienna, Austria
-
R Development Core Team. 2010. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria.
-
(2010)
R: A Language and Environment for Statistical Computing
-
-
-
36
-
-
33750404277
-
Pneumonia in nonambulatory patients: The role of oral bacteria and oral hygiene
-
Scannapieco FA. 2006. Pneumonia in nonambulatory patients. The role of oral bacteria and oral hygiene. J. Am. Dent. Assoc. 137(Suppl.):21S-25S. (Pubitemid 44643018)
-
(2006)
Journal of the American Dental Association
, vol.137
, Issue.10 SUPPL.
-
-
Scannapieco, F.A.1
-
38
-
-
23044496716
-
Long-term effectiveness of potent antiretroviral therapy in preventing AIDS and death: A prospective cohort study
-
DOI 10.1016/S0140-6736(05)67022-5, PII S0140673605670225
-
Sterne JA, et al. 2005. Long-term effectiveness of potent antiretroviral therapy in preventing AIDS and death: a prospective cohort study. Lancet 366:378-384. (Pubitemid 41073955)
-
(2005)
Lancet
, vol.366
, Issue.9483
, pp. 378-384
-
-
Sterne, J.A.C.1
Hernan, M.A.2
Ledergerber, B.3
Tilling, K.4
Weber, R.5
Sendi, P.6
Rickenbach, M.7
Robins, J.M.8
Egger, M.9
Battegay, M.10
Bernasconi, E.11
Boni, J.12
Bucher, H.13
Burgisser, P.14
Cattacin, S.15
Cavassini, M.16
Dubs, R.17
Egger, M.18
Elzi, L.19
Erb, P.20
Fantelli, K.21
Fischer, M.22
Flepp, M.23
Fontana, A.24
Francioli, P.25
Furrer, H.26
Gorgievski, M.27
Gunthard, H.28
Hirschel, B.29
Kaiser, L.30
Kind, C.31
Klimkait, T.32
Lauper, U.33
Ledergerber, B.34
Opravil, M.35
Paccaud, F.36
Pantaleo, G.37
Perrin, L.38
Piffaretti, J.-C.39
Rickenbach, M.40
Rudin, C.41
Schmid, P.42
Schupbach, J.43
Speck, R.44
Telenti, A.45
Trkola, A.46
Vernazza, P.47
Weber, R.48
Yerly, S.49
more..
-
40
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
Turnbaugh PJ, et al. 2009. A core gut microbiome in obese and lean twins. Nature 457:480-484.
-
(2009)
Nature
, vol.457
, pp. 480-484
-
-
Turnbaugh, P.J.1
-
41
-
-
33845874101
-
An obesity-associated gut microbiome with increased capacity for energy harvest
-
DOI 10.1038/nature05414, PII NATURE05414
-
Turnbaugh PJ, et al. 2006. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444:1027-1031. (Pubitemid 46018515)
-
(2006)
Nature
, vol.444
, Issue.7122
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Mahowald, M.A.3
Magrini, V.4
Mardis, E.R.5
Gordon, J.I.6
-
42
-
-
77952158672
-
Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins
-
Turnbaugh PJ, et al. 2010. Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins. Proc. Natl. Acad. Sci. U. S. A. 107:7503-7508.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 7503-7508
-
-
Turnbaugh, P.J.1
-
43
-
-
0023614222
-
Bacterial infections in adult patients with the acquired immune deficiency syndrome (AIDS) and AIDS-related complex
-
Witt DJ, Craven DE, McCabe WR. 1987. Bacterial infections in adult patients with the acquired immune deficiency syndrome (AIDS) and AIDS-related complex. Am. J. Med. 82:900-906.
-
(1987)
Am. J. Med.
, vol.82
, pp. 900-906
-
-
Witt, D.J.1
Craven, D.E.2
McCabe, W.R.3
|