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Volumn 8, Issue 1, 2013, Pages

Sputum Microbiota in Tuberculosis as Revealed by 16S rRNA Pyrosequencing

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

EID: 84872854805     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0054574     Document Type: Article
Times cited : (90)

References (47)
  • 1
    • 79955103273 scopus 로고    scopus 로고
    • WHO, Available
    • WHO (2011) Global tuberculosis control: WHO report 2011. Available: http://www.who.int/tb/publications/global_report/en/index.html. Accessed 2012 Oct 24.
    • (2011) Global tuberculosis control: WHO report 2011
  • 2
    • 41849118808 scopus 로고    scopus 로고
    • Confronting the scientific obstacles to global control of tuberculosis
    • Young DB, Perkins MD, Duncan K, Barry CE 3rd (2008) Confronting the scientific obstacles to global control of tuberculosis. J Clin Invest 118: 1255-1265.
    • (2008) J Clin Invest , vol.118 , pp. 1255-1265
    • Young, D.B.1    Perkins, M.D.2    Duncan, K.3    Barry 3rd, C.E.4
  • 3
    • 70350478800 scopus 로고    scopus 로고
    • The past and future of tuberculosis research
    • Comas I, Gagneux S, (2009) The past and future of tuberculosis research. PLoS Pathog 5: e1000600.
    • (2009) PLoS Pathog , vol.5
    • Comas, I.1    Gagneux, S.2
  • 4
    • 84858376593 scopus 로고    scopus 로고
    • The impact of the gut microbiota on human health: an integrative view
    • Clemente JC, Ursell LK, Parfrey LW, Knight R, (2012) The impact of the gut microbiota on human health: an integrative view. Cell 148: 1258-1270.
    • (2012) Cell , vol.148 , pp. 1258-1270
    • Clemente, J.C.1    Ursell, L.K.2    Parfrey, L.W.3    Knight, R.4
  • 5
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, et al. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-380.
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1    Egholm, M.2    Altman, W.E.3    Attiya, S.4    Bader, J.S.5
  • 6
    • 84859905060 scopus 로고    scopus 로고
    • Contrasting denitrifier communities relate to contrasting N2O emission patterns from acidic peat soils in arctic tundra
    • Palmer K, Biasi C, Horn MA, (2012) Contrasting denitrifier communities relate to contrasting N2O emission patterns from acidic peat soils in arctic tundra. ISME J 6: 1058-1077.
    • (2012) ISME J , vol.6 , pp. 1058-1077
    • Palmer, K.1    Biasi, C.2    Horn, M.A.3
  • 7
    • 77954834182 scopus 로고    scopus 로고
    • Composition and genetic diversity of picoeukaryotes in subtropical coastal waters as revealed by 454 pyrosequencing
    • Cheung MK, Au CH, Chu KH, Kwan HS, Wong CK, (2010) Composition and genetic diversity of picoeukaryotes in subtropical coastal waters as revealed by 454 pyrosequencing. ISME J 4: 1053-1059.
    • (2010) ISME J , vol.4 , pp. 1053-1059
    • Cheung, M.K.1    Au, C.H.2    Chu, K.H.3    Kwan, H.S.4    Wong, C.K.5
  • 8
    • 80054851581 scopus 로고    scopus 로고
    • Gastrointestinal microbiome signatures of pediatric patients with irritable bowel syndrome
    • Saulnier DM, Riehle K, Mistretta TA, Diaz MA, Mandal D, et al. (2011) Gastrointestinal microbiome signatures of pediatric patients with irritable bowel syndrome. Gastroenterology 141: 1782-1791.
    • (2011) Gastroenterology , vol.141 , pp. 1782-1791
    • Saulnier, D.M.1    Riehle, K.2    Mistretta, T.A.3    Diaz, M.A.4    Mandal, D.5
  • 9
    • 84865781286 scopus 로고    scopus 로고
    • Prevalence of streptococci and increased polymicrobial diversity associated with cystic fibrosis patient stability
    • Filkins LM, Hampton TH, Gifford AH, Gross MJ, Hogan DA, et al. (2012) Prevalence of streptococci and increased polymicrobial diversity associated with cystic fibrosis patient stability. J Bacteriol 194: 4709-4717.
    • (2012) J Bacteriol , vol.194 , pp. 4709-4717
    • Filkins, L.M.1    Hampton, T.H.2    Gifford, A.H.3    Gross, M.J.4    Hogan, D.A.5
  • 10
    • 78650586813 scopus 로고    scopus 로고
    • Phylogenetic and metabolic diversity of bacteria associated with cystic fibrosis
    • Guss AM, Roeselers G, Newton IL, Young CR, Klepac-Ceraj V, et al. (2011) Phylogenetic and metabolic diversity of bacteria associated with cystic fibrosis. ISME J 5: 20-29.
    • (2011) ISME J , vol.5 , pp. 20-29
    • Guss, A.M.1    Roeselers, G.2    Newton, I.L.3    Young, C.R.4    Klepac-Ceraj, V.5
  • 11
    • 84867563577 scopus 로고    scopus 로고
    • Microbiome diversity in the bronchial tract of patients with chronic obstructive pulmonary disease
    • Cabrera-Rubio R, Garcia-Núñez M, Setó L, Antó JM, Moya A, et al. (2012) Microbiome diversity in the bronchial tract of patients with chronic obstructive pulmonary disease. J Clin Microbiol 50: 3562-3568.
    • (2012) J Clin Microbiol , vol.50 , pp. 3562-3568
    • Cabrera-Rubio, R.1    Garcia-Núñez, M.2    Setó, L.3    Antó, J.M.4    Moya, A.5
  • 12
    • 77957302426 scopus 로고    scopus 로고
    • Analysis of the microbiota of sputum samples from patients with lower respiratory tract infections
    • Zhou Y, Lin P, Li Q, Han L, Zheng H, et al. (2010) Analysis of the microbiota of sputum samples from patients with lower respiratory tract infections. Acta Biochim Biophys Sin (Shanghai) 42: 754-76.
    • (2010) Acta Biochim Biophys Sin (Shanghai) , vol.42 , pp. 754-776
    • Zhou, Y.1    Lin, P.2    Li, Q.3    Han, L.4    Zheng, H.5
  • 14
    • 84872855123 scopus 로고    scopus 로고
    • Prevalence and diversity of Synergistetes taxa in periodontal health and disease
    • In press
    • You M, Mo S, Watt RM, Leung WK Prevalence and diversity of Synergistetes taxa in periodontal health and disease. J Periodontal Res. In press.
    • J Periodontal Res
    • You, M.1    Mo, S.2    Watt, R.M.3    Leung, W.K.4
  • 16
    • 78650088377 scopus 로고    scopus 로고
    • Stop TB Partnership, Available
    • Stop TB Partnership (2011) The global plan to stop TB 2011-2015. Available: http://www.stoptb.org/global/plan/. Accessed 2012 Oct 24.
    • (2011) The global plan to stop TB 2011-2015
  • 17
    • 79952748287 scopus 로고    scopus 로고
    • Unravelling the effects of the environment and host genotype on the gut microbiome
    • Spor A, Koren O, Ley R, (2011) Unravelling the effects of the environment and host genotype on the gut microbiome. Nat Rev Microbiol 9: 279-290.
    • (2011) Nat Rev Microbiol , vol.9 , pp. 279-290
    • Spor, A.1    Koren, O.2    Ley, R.3
  • 18
    • 77950669604 scopus 로고    scopus 로고
    • The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice
    • Turnbaugh PJ, Ridaura VK, Faith JJ, Rey FE, Knight R, et al. (2009) The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Sci Transl Med 1: 6ra14.
    • (2009) Sci Transl Med , vol.1
    • Turnbaugh, P.J.1    Ridaura, V.K.2    Faith, J.J.3    Rey, F.E.4    Knight, R.5
  • 19
    • 84858439578 scopus 로고    scopus 로고
    • The human microbiome: at the interface of health and disease
    • Cho I, Blaser MJ, (2012) The human microbiome: at the interface of health and disease. Nat Rev Genet 13: 260-270.
    • (2012) Nat Rev Genet , vol.13 , pp. 260-270
    • Cho, I.1    Blaser, M.J.2
  • 21
    • 37249089774 scopus 로고    scopus 로고
    • Value of single acid-fast bacilli sputum smears in the diagnosis of tuberculosis in HIV-positive subjects
    • Vignesh R, Balakrishnan P, Shankar EM, Murugavel KG, Hanas S, et al. (2007) Value of single acid-fast bacilli sputum smears in the diagnosis of tuberculosis in HIV-positive subjects. J Med Microbiol 56: 1709-1710.
    • (2007) J Med Microbiol , vol.56 , pp. 1709-1710
    • Vignesh, R.1    Balakrishnan, P.2    Shankar, E.M.3    Murugavel, K.G.4    Hanas, S.5
  • 24
    • 68949175293 scopus 로고    scopus 로고
    • Neisseria meningitidis: epidemiology, treatment and prevention in adolescents
    • Brigham KS, Sandora TJ, (2009) Neisseria meningitidis: epidemiology, treatment and prevention in adolescents. Curr Opin Pediatr 21: 437-443.
    • (2009) Curr Opin Pediatr , vol.21 , pp. 437-443
    • Brigham, K.S.1    Sandora, T.J.2
  • 26
    • 79952353786 scopus 로고    scopus 로고
    • Streptococcus mitis: walking the line between commensalism and pathogenesis
    • Mitchell J, (2011) Streptococcus mitis: walking the line between commensalism and pathogenesis. Mol Oral Microbiol 26: 89-98.
    • (2011) Mol Oral Microbiol , vol.26 , pp. 89-98
    • Mitchell, J.1
  • 28
    • 67649158949 scopus 로고    scopus 로고
    • The immune response of oral epithelial cells induced by single-species and complex naturally formed biofilms
    • Eberhard J, Pietschmann R, Falk W, Jepsen S, Dommisch H, (2009) The immune response of oral epithelial cells induced by single-species and complex naturally formed biofilms. Oral Microbiol Immunol 24: 325-330.
    • (2009) Oral Microbiol Immunol , vol.24 , pp. 325-330
    • Eberhard, J.1    Pietschmann, R.2    Falk, W.3    Jepsen, S.4    Dommisch, H.5
  • 29
    • 84859967531 scopus 로고    scopus 로고
    • Complete genome and transcriptomes of Streptococcus parasanguinis FW213: phylogenic relations and potential virulence mechanisms
    • Geng J, Chiu CH, Tang P, Chen Y, Shieh HR, et al. (2012) Complete genome and transcriptomes of Streptococcus parasanguinis FW213: phylogenic relations and potential virulence mechanisms. PLoS One 7: e34769.
    • (2012) PLoS One , vol.7
    • Geng, J.1    Chiu, C.H.2    Tang, P.3    Chen, Y.4    Shieh, H.R.5
  • 30
    • 30744469396 scopus 로고    scopus 로고
    • Viridans streptococci isolated by culture from blood of cancer patients: clinical and microbiologic analysis of 50 cases
    • Han XY, Kamana M, Rolston KV, (2006) Viridans streptococci isolated by culture from blood of cancer patients: clinical and microbiologic analysis of 50 cases. J Clin Microbiol 44: 160-165.
    • (2006) J Clin Microbiol , vol.44 , pp. 160-165
    • Han, X.Y.1    Kamana, M.2    Rolston, K.V.3
  • 31
    • 77950251400 scopus 로고    scopus 로고
    • A human gut microbial gene catalogue established by metagenomic sequencing
    • Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, et al. (2010) A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464: 59-65.
    • (2010) Nature , vol.464 , pp. 59-65
    • Qin, J.1    Li, R.2    Raes, J.3    Arumugam, M.4    Burgdorf, K.S.5
  • 32
    • 0023198150 scopus 로고
    • Characteristics and sites of infection of Eubacterium nodatum, Eubacterium timidum, Eubacterium brachy, and other asaccharolytic eubacteria
    • Hill GB, Ayers OM, Kohan AP, (1987) Characteristics and sites of infection of Eubacterium nodatum, Eubacterium timidum, Eubacterium brachy, and other asaccharolytic eubacteria. J Clin Microbiol 25: 1540-1545.
    • (1987) J Clin Microbiol , vol.25 , pp. 1540-1545
    • Hill, G.B.1    Ayers, O.M.2    Kohan, A.P.3
  • 33
    • 5444269195 scopus 로고    scopus 로고
    • Oribacterium sinus gen. nov., sp. nov., within the family 'Lachnospiraceae' (phylum Firmicutes)
    • Carlier JP, K'ouas G, Bonne I, Lozniewski A, Mory F, (2004) Oribacterium sinus gen. nov., sp. nov., within the family 'Lachnospiraceae' (phylum Firmicutes). Int J Syst Evol Microbiol 54: 1611-1615.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 1611-1615
    • Carlier, J.P.1    K'ouas, G.2    Bonne, I.3    Lozniewski, A.4    Mory, F.5
  • 34
    • 34248194876 scopus 로고    scopus 로고
    • Moryella indoligenes gen. nov., sp. nov., an anaerobic bacterium isolated from clinical specimens
    • Carlier JP, K'ouas G, Han XY, (2007) Moryella indoligenes gen. nov., sp. nov., an anaerobic bacterium isolated from clinical specimens. Int J Syst Evol Microbiol 57: 725-729.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 725-729
    • Carlier, J.P.1    K'ouas, G.2    Han, X.Y.3
  • 35
  • 36
    • 84861753753 scopus 로고    scopus 로고
    • Lactobacillus crispatus M206119 exacerbates murine DSS-colitis by interfering with inflammatory responses
    • Zhou FX, Chen L, Liu XW, Ouyang CH, Wu XP, et al. (2012) Lactobacillus crispatus M206119 exacerbates murine DSS-colitis by interfering with inflammatory responses. World J Gastroenterol 18: 2344-2356.
    • (2012) World J Gastroenterol , vol.18 , pp. 2344-2356
    • Zhou, F.X.1    Chen, L.2    Liu, X.W.3    Ouyang, C.H.4    Wu, X.P.5
  • 38
    • 60849132184 scopus 로고    scopus 로고
    • Co-infection by Streptococcus anginosus and Mycobacterium tuberculosis: three case reports
    • Rabuñal R, Corredoira J, Monte R, Coira A, (2009) Co-infection by Streptococcus anginosus and Mycobacterium tuberculosis: three case reports. J Med Case Rep 3: 37.
    • (2009) J Med Case Rep , vol.3 , pp. 37
    • Rabuñal, R.1    Corredoira, J.2    Monte, R.3    Coira, A.4
  • 39
    • 0033390409 scopus 로고    scopus 로고
    • Reclassification of Peptostreptococcus magnus (Prevot 1933) Holdeman and Moore 1972 as Finegoldia magna comb. nov. and Peptostreptococcus micros (Prevot 1933) Smith 1957 as Micromonas micros comb. nov
    • Murdoch DA, Shah HN, (1999) Reclassification of Peptostreptococcus magnus (Prevot 1933) Holdeman and Moore 1972 as Finegoldia magna comb. nov. and Peptostreptococcus micros (Prevot 1933) Smith 1957 as Micromonas micros comb. nov. Anaerobe 5: 555-559.
    • (1999) Anaerobe , vol.5 , pp. 555-559
    • Murdoch, D.A.1    Shah, H.N.2
  • 40
    • 2342442430 scopus 로고    scopus 로고
    • Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease
    • Ott SJ, Musfeldt M, Wenderoth DF, Hampe J, Brant O, et al. (2004) Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease. Gut 53: 685-93.
    • (2004) Gut , vol.53 , pp. 685-693
    • Ott, S.J.1    Musfeldt, M.2    Wenderoth, D.F.3    Hampe, J.4    Brant, O.5
  • 41
    • 79551495183 scopus 로고    scopus 로고
    • Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma
    • Huang YJ, Nelson CE, Brodie EL, Desantis TZ, Baek MS, et al. (2011) Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma. J Allergy Clin Immunol 127: 372-381.
    • (2011) J Allergy Clin Immunol , vol.127 , pp. 372-381
    • Huang, Y.J.1    Nelson, C.E.2    Brodie, E.L.3    Desantis, T.Z.4    Baek, M.S.5
  • 42
    • 44649129135 scopus 로고    scopus 로고
    • Commensals, bacterial pathogens and intestinal inflammation: an intriguing ménage à trois
    • Pédron T, Sansonetti P, (2008) Commensals, bacterial pathogens and intestinal inflammation: an intriguing ménage à trois. Cell Host Microbe 3: 344-347.
    • (2008) Cell Host Microbe , vol.3 , pp. 344-347
    • Pédron, T.1    Sansonetti, P.2
  • 43
    • 40349113425 scopus 로고    scopus 로고
    • The macaque gut microbiome in health, lentiviral infection, and chronic enterocolitis
    • McKenna P, Hoffmann C, Minkah N, Aye PP, Lackner A, et al. (2008) The macaque gut microbiome in health, lentiviral infection, and chronic enterocolitis. PLoS Pathog 4: e20.
    • (2008) PLoS Pathog , vol.4
    • McKenna, P.1    Hoffmann, C.2    Minkah, N.3    Aye, P.P.4    Lackner, A.5
  • 45
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q, Garrity GM, Tiedje JM, Cole JR, (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 46
    • 33746061683 scopus 로고    scopus 로고
    • Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
    • DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, et al. (2006) Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 72: 5069-5072.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 5069-5072
    • DeSantis, T.Z.1    Hugenholtz, P.2    Larsen, N.3    Rojas, M.4    Brodie, E.L.5
  • 47
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities
    • Lozupone C, Knight R, (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71: 8228-8235.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2


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