Taxonomic Precision of Different Hypervariable Regions of 16S rRNA Gene and Annotation Methods for Functional Bacterial Groups in Biological Wastewater Treatment

PLoS ONE

Volumn 8, Issue 10, 2013, Pages

  Guo, Feng ^a   Ju, Feng ^a   Cai, Lin ^a   Zhang, Tong ^a  

^a UNIVERSITY OF HONG KONG   (Hong Kong)

Author keywords

[No Author keywords available]

Indexed keywords

DNA 16S; RNA 16S;

ACCURACY; ACTIVATED SLUDGE; AMMONIA OXIDIZING BACTERIUM; AMPLICON; ARTICLE; BACTERIUM; BACTERIUM IDENTIFICATION; BLAST BASED BEST HIT ANNOTATION; BULKING BACTERIUM; CLASSIFICATION ALGORITHM; CONTROLLED STUDY; DNA SEQUENCE; FALSE NEGATIVE RESULT; FOAMING BACTERIUM; GENE STRUCTURE; GENETIC DATABASE; HIGH THROUGHPUT SEQUENCING; HYPERVARIABLE REGION V12; HYPERVARIABLE REGION V21; HYPERVARIABLE REGION V34; HYPERVARIABLE REGION V43; HYPERVARIABLE REGION V56; HYPERVARIABLE REGION V65; HYPERVARIABLE REGION V789; HYPERVARIABLE REGION V987; INTERMETHOD COMPARISON; METAGENOME ANALYZER LOWEST COMMON ANCESTOR ANNOTATION; MICROBIAL COMMUNITY; NITRITE OXIDIZING BACTERIUM; NONHUMAN; ORGANISMS BY METABOLISM; POPULATION ABUNDANCE; PYROSEQUENCING; RIBOSOMAL DATABASE PROJECT CLASSIFIER; RNA GENE; TAXONOMIC IDENTIFICATION; WASTE WATER MANAGEMENT;

BACTERIA (MICROORGANISMS);

BACTERIA; BIODEGRADATION, ENVIRONMENTAL; GENES, RRNA; GENETIC VARIATION; MOLECULAR SEQUENCE ANNOTATION; MULTILOCUS SEQUENCE TYPING; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEWAGE; WASTE WATER;

EID: 84885796893     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0076185     Document Type: Article

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