-
1
-
-
77949732088
-
Prediction of the human membrane proteome
-
doi: 10.1002/pmic.200900258
-
Fagerberg L, Jonasson K, von Heijne G, Uhlen M, Berglund L (2010) Prediction of the human membrane proteome. Proteomics 10 (6): 1141-1149. doi: 10.1002/pmic.200900258
-
(2010)
Proteomics
, vol.10
, Issue.6
, pp. 1141-1149
-
-
Fagerberg, L.1
Jonasson, K.2
Von Heijne, G.3
Uhlen, M.4
Berglund, L.5
-
2
-
-
79959429680
-
Transmembrane communication: General principles and lessons from the structure and function of the M2 proton channel, K (+) channels, and integrin receptors
-
doi: 10.1146/ annurev-biochem-091008-152423
-
Grigoryan G, Moore DT, DeGrado WF (2011) Transmembrane communication: general principles and lessons from the structure and function of the M2 proton channel, K (+) channels, and integrin receptors. Annu Rev Biochem 80:211-237. doi: 10.1146/ annurev-biochem-091008-152423
-
(2011)
Annu Rev Biochem
, vol.80
, pp. 211-237
-
-
Grigoryan, G.1
Moore, D.T.2
Degrado, W.F.3
-
3
-
-
84855782874
-
Computational design of membrane proteins
-
doi: 10.1016/j. str.2011.12.003
-
Perez-Aguilar JM, Saven JG (2012) Computational design of membrane proteins. Structure 20 (1):5-14. doi: 10.1016/j. str.2011.12.003
-
(2012)
Structure
, vol.20
, Issue.1
, pp. 5-14
-
-
Perez-Aguilar, J.M.1
Saven, J.G.2
-
4
-
-
4143085058
-
Folding of helical membrane proteins: The role of polar, GxxxG-like and proline motifs
-
doi: 10.1016/j.sbi.2004.07.007
-
Senes A, Engel DE, DeGrado WF (2004) Folding of helical membrane proteins: the role of polar, GxxxG-like and proline motifs. Curr Opin Struct Biol 14 (4):465-479. doi: 10.1016/j.sbi.2004.07.007
-
(2004)
Curr Opin Struct Biol
, vol.14
, Issue.4
, pp. 465-479
-
-
Senes, A.1
Engel, D.E.2
Degrado, W.F.3
-
5
-
-
54749145468
-
Peptide probes for protein transmembrane domains
-
doi: 10.1021/cb800049w
-
Slivka PF, Wong J, Caputo GA, Yin H (2008) Peptide probes for protein transmembrane domains. ACS Chem Biol 3 (7):402-411. doi: 10.1021/cb800049w
-
(2008)
ACS Chem Biol
, vol.3
, Issue.7
, pp. 402-411
-
-
Slivka, P.F.1
Wong, J.2
Caputo, G.A.3
Yin, H.4
-
6
-
-
0019891830
-
Fluorescence quenching in model membranes. Relationship between calcium adenosinetriphosphatase enzyme activity and the affinity of the protein for phosphatidylcholines with different acyl chain characteristics
-
Caffrey M, Feigenson GW (1981) Fluorescence quenching in model membranes. Relationship between calcium adenosinetriphosphatase enzyme activity and the affinity of the protein for phosphatidylcholines with different acyl chain characteristics. Biochemistry 20 (7):1949-1961
-
(1981)
Biochemistry
, vol.20
, Issue.7
, pp. 1949-1961
-
-
Caffrey, M.1
Feigenson, G.W.2
-
7
-
-
79958841994
-
Light-induced conformational changes in photosynthetic reaction centers: Impact of detergents and lipids on the electronic structure of the primary electron donor
-
doi: 10.1021/bi200595z
-
Deshmukh SS, Akhavein H, Williams JC, Allen JP, Kalman L (2011) Light-induced conformational changes in photosynthetic reaction centers: impact of detergents and lipids on the electronic structure of the primary electron donor. Biochemistry 50 (23): 5249-5262. doi: 10.1021/bi200595z
-
(2011)
Biochemistry
, vol.50
, Issue.23
, pp. 5249-5262
-
-
Deshmukh, S.S.1
Akhavein, H.2
Williams, J.C.3
Allen, J.P.4
Kalman, L.5
-
8
-
-
0025876658
-
Hydrophobic membrane thickness and lipid-protein interactions of the leucine transport system of Lactococcus lactis
-
In't Veld G, Driessen AJ, Op den Kamp JA, Konings WN (1991) Hydrophobic membrane thickness and lipid-protein interactions of the leucine transport system of Lactococcus lactis. Biochim Biophys Acta 1065 (2):203-212
-
(1991)
Biochim Biophys Acta
, vol.1065
, Issue.2
, pp. 203-212
-
-
In'T Veld, G.1
Driessen, A.J.2
Op Den Kamp, J.A.3
Konings, W.N.4
-
9
-
-
0020486964
-
Bilayer thickness and enzymatic activity in the mitochondrial cytochrome c oxidase and ATPase complex
-
Montecucco C, Smith GA, Dabbeni-sala F, Johannsson A, Galante YM, Bisson R (1982) Bilayer thickness and enzymatic activity in the mitochondrial cytochrome c oxidase and ATPase complex. FEBS Lett 144 (1):145-148
-
(1982)
FEBS Lett
, vol.144
, Issue.1
, pp. 145-148
-
-
Montecucco, C.1
Smith, G.A.2
Dabbeni-Sala, F.3
Johannsson, A.4
Galante, Y.M.5
Bisson, R.6
-
10
-
-
0035902530
-
Effects of bilayer thickness on the activity of diacylglycerol kinase of Escherichia coli
-
Pilot JD, East JM, Lee AG (2001) Effects of bilayer thickness on the activity of diacylglycerol kinase of Escherichia coli. Biochemistry 40 (28):8188-8195
-
(2001)
Biochemistry
, vol.40
, Issue.28
, pp. 8188-8195
-
-
Pilot, J.D.1
East, J.M.2
Lee, A.G.3
-
11
-
-
34347262391
-
Bilayer thickness and membrane protein function: An energetic perspective
-
doi: 10.1146/ annurev.biophys.36.040306.132643
-
Andersen OS, Koeppe RE II (2007) Bilayer thickness and membrane protein function: an energetic perspective. Annu Rev Biophys Biomol Struct 36:107-130. doi: 10.1146/ annurev.biophys.36.040306.132643
-
(2007)
Annu Rev Biophys Biomol Struct
, vol.36
, pp. 107-130
-
-
Andersen, O.S.1
Koeppe, R.E.I.I.2
-
12
-
-
37249037182
-
Molecular code for transmembrane-helix recognition by the Sec61 translocon
-
doi: 10.1038/nature06387
-
Hessa T, Meindl-Beinker NM, Bernsel A, Kim H, Sato Y, Lerch-Bader M, Nilsson I, White SH, von Heijne G (2007) Molecular code for transmembrane-helix recognition by the Sec61 translocon. Nature 450 (7172):1026-1030. doi: 10.1038/nature06387
-
(2007)
Nature
, vol.450
, Issue.7172
, pp. 1026-1030
-
-
Hessa, T.1
Meindl-Beinker, N.M.2
Bernsel, A.3
Kim, H.4
Sato, Y.5
Lerch-Bader, M.6
Nilsson, I.7
White, S.H.8
Von Heijne, G.9
-
13
-
-
77954299061
-
A comprehensive comparison of transmembrane domains reveals organelle-specific properties
-
doi: 10.1016/j.cell. 2010.05.037
-
Sharpe HJ, Stevens TJ, Munro S (2010) A comprehensive comparison of transmembrane domains reveals organelle-specific properties. Cell 142 (1):158-169. doi: 10.1016/j.cell. 2010.05.037
-
(2010)
Cell
, vol.142
, Issue.1
, pp. 158-169
-
-
Sharpe, H.J.1
Stevens, T.J.2
Munro, S.3
-
14
-
-
0031740415
-
Hydrophobic mismatch between proteins and lipids in membranes
-
Killian JA (1998) Hydrophobic mismatch between proteins and lipids in membranes. Biochim Biophys Acta 1376 (3):401-415
-
(1998)
Biochim Biophys Acta
, vol.1376
, Issue.3
, pp. 401-415
-
-
Killian, J.A.1
-
15
-
-
0034284386
-
How proteins adapt to a membrane-water interface
-
Killian JA, von Heijne G (2000) How proteins adapt to a membrane-water interface. Trends Biochem Sci 25 (9):429-434
-
(2000)
Trends Biochem Sci
, vol.25
, Issue.9
, pp. 429-434
-
-
Killian, J.A.1
Von Heijne, G.2
-
16
-
-
0037465834
-
Cumulative effects of amino acid substitutions and hydrophobic mismatch upon the transmembrane stability and conformation of hydrophobic alpha-helices
-
doi: 10.1021/bi026697d
-
Caputo GA, London E (2003) Cumulative effects of amino acid substitutions and hydrophobic mismatch upon the transmembrane stability and conformation of hydrophobic alpha-helices. Biochemistry 42 (11):3275-3285. doi: 10.1021/bi026697d
-
(2003)
Biochemistry
, vol.42
, Issue.11
, pp. 3275-3285
-
-
Caputo, G.A.1
London, E.2
-
17
-
-
0027892019
-
Cholesterol and the Golgi apparatus
-
Bretscher MS, Munro S (1993) Cholesterol and the Golgi apparatus. Science 261 (5126): 1280-1281
-
(1993)
Science
, vol.261
, Issue.5126
, pp. 1280-1281
-
-
Bretscher, M.S.1
Munro, S.2
-
18
-
-
0036725152
-
Physical principles underlying the transduction of bilayer deformation forces during mechanosensitive channel gating
-
doi: 10.1038/ nsb827
-
Perozo E, Kloda A, Cortes DM, Martinac B (2002) Physical principles underlying the transduction of bilayer deformation forces during mechanosensitive channel gating. Nat Struct Biol 9 (9):696-703. doi: 10.1038/ nsb827
-
(2002)
Nat Struct Biol
, vol.9
, Issue.9
, pp. 696-703
-
-
Perozo, E.1
Kloda, A.2
Cortes, D.M.3
Martinac, B.4
-
19
-
-
36248948604
-
Mechanosensitive channel of large conductance
-
doi: 10.1016/j.biocel.2007.02.003
-
Kloda A, Petrov E, Meyer GR, Nguyen T, Hurst AC, Hool L, Martinac B (2008) Mechanosensitive channel of large conductance. Int J Biochem Cell Biol 40 (2):164-169. doi: 10.1016/j.biocel.2007.02.003
-
(2008)
Int J Biochem Cell Biol
, vol.40
, Issue.2
, pp. 164-169
-
-
Kloda, A.1
Petrov, E.2
Meyer, G.R.3
Nguyen, T.4
Hurst, A.C.5
Hool, L.6
Martinac, B.7
-
20
-
-
0032581038
-
Influence of lipid/peptide hydrophobic mismatch on the thickness of diacylphosphatidylcholine bilayers. A 2H NMR and ESR study using designed transmembrane alpha-helical peptides and gramicidin A
-
doi: 10.1021/bi980233r
-
de Planque MR, Greathouse DV, Koeppe RE II, Schafer H, Marsh D, Killian JA (1998) Influence of lipid/peptide hydrophobic mismatch on the thickness of diacylphosphatidylcholine bilayers. A 2H NMR and ESR study using designed transmembrane alpha-helical peptides and gramicidin A. Biochemistry 37 (26):9333-9345. doi: 10.1021/bi980233r
-
(1998)
Biochemistry
, vol.37
, Issue.26
, pp. 9333-9345
-
-
De Planque, M.R.1
Greathouse, D.V.2
Koeppe, R.E.I.I.3
Schafer, H.4
Marsh, D.5
Killian, J.A.6
-
21
-
-
77956579453
-
Influence of hydrophobic mismatch and amino acid composition on the lateral diffusion of transmembrane peptides
-
doi: 10.1016/j. bpj.2010.05.042
-
Ramadurai S, Holt A, Schafer LV, Krasnikov VV, Rijkers DT, Marrink SJ, Killian JA, Poolman B (2010) Influence of hydrophobic mismatch and amino acid composition on the lateral diffusion of transmembrane peptides. Biophys J 99 (5):1447-1454. doi: 10.1016/j. bpj.2010.05.042
-
(2010)
Biophys J
, vol.99
, Issue.5
, pp. 1447-1454
-
-
Ramadurai, S.1
Holt, A.2
Schafer, L.V.3
Krasnikov, V.V.4
Rijkers, D.T.5
Marrink, S.J.6
Killian, J.A.7
Poolman, B.8
-
22
-
-
0034696524
-
Tryptophan-anchored transmembrane peptides promote formation of nonlamellar phases in phosphatidylethanolamine model membranes in a mismatch-dependent manner
-
van der Wel PC, Pott T, Morein S, Greathouse DV, Koeppe RE II, Killian JA (2000) Tryptophan-anchored transmembrane peptides promote formation of nonlamellar phases in phosphatidylethanolamine model membranes in a mismatch-dependent manner. Biochemistry 39 (11):3124-3133
-
(2000)
Biochemistry
, vol.39
, Issue.11
, pp. 3124-3133
-
-
Van Der Wel, P.C.1
Pott, T.2
Morein, S.3
Greathouse, D.V.4
Koeppe, R.E.I.I.5
Killian, J.A.6
-
23
-
-
0026442901
-
Interaction of a peptide model of a hydrophobic transmembrane alpha-helical segment of a membrane protein with phosphatidylcholine bilayers: Differential scanning calorimetric and FTIR spectroscopic studies
-
Zhang YP, Lewis RN, Hodges RS, McElhaney RN (1992) Interaction of a peptide model of a hydrophobic transmembrane alpha-helical segment of a membrane protein with phosphatidylcholine bilayers: differential scanning calorimetric and FTIR spectroscopic studies. Biochemistry 31 (46):11579-11588
-
(1992)
Biochemistry
, vol.31
, Issue.46
, pp. 11579-11588
-
-
Zhang, Y.P.1
Lewis, R.N.2
Hodges, R.S.3
McElhaney, R.N.4
-
24
-
-
35548971929
-
Effect of sequence hydrophobicity and bilayer width upon the minimum length required for the formation of transmembrane helices in membranes
-
Krishnakumar SS, London E (2007) Effect of sequence hydrophobicity and bilayer width upon the minimum length required for the formation of transmembrane helices in membranes. J Mol Biol 374 (3):671-687
-
(2007)
J Mol Biol
, vol.374
, Issue.3
, pp. 671-687
-
-
Krishnakumar, S.S.1
London, E.2
-
25
-
-
77954371031
-
Revisiting hydrophobic mismatch with free energy simulation studies of transmembrane helix tilt and rotation
-
doi: 10.1016/j. bpj.2010.04.015
-
Kim T, Im W (2010) Revisiting hydrophobic mismatch with free energy simulation studies of transmembrane helix tilt and rotation. Biophys J 99 (1):175-183. doi: 10.1016/j. bpj.2010.04.015
-
(2010)
Biophys J
, vol.99
, Issue.1
, pp. 175-183
-
-
Kim, T.1
Im, W.2
-
26
-
-
0032512417
-
Hydrophobic mismatch and the incorporation of peptides into lipid bilayers: A possible mechanism for retention in the Golgi
-
doi: 10.1021/bi972441+
-
Webb RJ, East JM, Sharma RP, Lee AG (1998) Hydrophobic mismatch and the incorporation of peptides into lipid bilayers: a possible mechanism for retention in the Golgi. Biochemistry 37 (2):673-679. doi: 10.1021/bi972441+
-
(1998)
Biochemistry
, vol.37
, Issue.2
, pp. 673-679
-
-
Webb, R.J.1
East, J.M.2
Sharma, R.P.3
Lee, A.G.4
-
27
-
-
12244255728
-
Hydrophobic mismatch between helices and lipid bilayers
-
doi: 10.1016/ S0006-3495(03)74858-9
-
Weiss TM, van der Wel PC, Killian JA, Koeppe RE II, Huang HW (2003) Hydrophobic mismatch between helices and lipid bilayers. Biophys J 84 (1):379-385. doi: 10.1016/ S0006-3495 (03)74858-9
-
(2003)
Biophys J
, vol.84
, Issue.1
, pp. 379-385
-
-
Weiss, T.M.1
Van Der Wel, P.C.2
Killian, J.A.3
Koeppe, R.E.I.I.4
Huang, H.W.5
-
28
-
-
0036199831
-
Characterization of the thermotropic behavior and lateral organization of lipid-peptide mixtures by a combined experimental and theoretical approach: Effects of hydrophobic mismatch and role of flanking residues
-
doi: 10.1016/ S0006-3495 (02)75495-7
-
Morein S, Killian JA, Sperotto MM (2002) Characterization of the thermotropic behavior and lateral organization of lipid-peptide mixtures by a combined experimental and theoretical approach: effects of hydrophobic mismatch and role of flanking residues. Biophys J 82 (3):1405-1417. doi: 10.1016/ S0006-3495 (02)75495-7
-
(2002)
Biophys J
, vol.82
, Issue.3
, pp. 1405-1417
-
-
Morein, S.1
Killian, J.A.2
Sperotto, M.M.3
-
29
-
-
0034108440
-
The effect of peptide/ lipid hydrophobic mismatch on the phase behavior of model membranes mimicking the lipid composition in Escherichia coli membranes
-
Morein S, Koeppe IR, Lindblom G, de Kruijff B, Killian JA (2000) The effect of peptide/ lipid hydrophobic mismatch on the phase behavior of model membranes mimicking the lipid composition in Escherichia coli membranes. Biophys J 78 (5):2475-2485
-
(2000)
Biophys J
, vol.78
, Issue.5
, pp. 2475-2485
-
-
Morein, S.1
Koeppe, I.R.2
Lindblom, G.3
De Kruijff, B.4
Killian, J.A.5
-
30
-
-
33646198955
-
Molecular dynamics simulations of model transmembrane peptides in lipid bilayers: A systematic investigation of hydrophobic mismatch
-
doi: 10.1529/ biophysj.105.073395
-
Kandasamy SK, Larson RG (2006) Molecular dynamics simulations of model transmembrane peptides in lipid bilayers: a systematic investigation of hydrophobic mismatch. Biophys J 90 (7):2326-2343. doi: 10.1529/ biophysj.105.073395
-
(2006)
Biophys J
, vol.90
, Issue.7
, pp. 2326-2343
-
-
Kandasamy, S.K.1
Larson, R.G.2
-
31
-
-
77952257688
-
Order parameters of a transmembrane helix in a fluid bilayer: Case study of a WALP peptide
-
doi: 10.1016/j. bpj.2010.01.016
-
Holt A, Rougier L, Reat V, Jolibois F, Saurel O, Czaplicki J, Killian JA, Milon A (2010) Order parameters of a transmembrane helix in a fluid bilayer: case study of a WALP peptide. Biophys J 98 (9):1864-1872. doi: 10.1016/j. bpj.2010.01.016
-
(2010)
Biophys J
, vol.98
, Issue.9
, pp. 1864-1872
-
-
Holt, A.1
Rougier, L.2
Reat, V.3
Jolibois, F.4
Saurel, O.5
Czaplicki, J.6
Killian, J.A.7
Milon, A.8
-
32
-
-
0037062590
-
Lipid dependence of membrane anchoring properties and snorkeling behavior of aromatic and charged residues in transmembrane peptides
-
Strandberg E, Morein S, Rijkers DT, Liskamp RM, van der Wel PC, Killian JA (2002) Lipid dependence of membrane anchoring properties and snorkeling behavior of aromatic and charged residues in transmembrane peptides. Biochemistry 41 (23):7190-7198
-
(2002)
Biochemistry
, vol.41
, Issue.23
, pp. 7190-7198
-
-
Strandberg, E.1
Morein, S.2
Rijkers, D.T.3
Liskamp, R.M.4
Van Der Wel, P.C.5
Killian, J.A.6
-
33
-
-
0037162409
-
Effect of variations in the structure of a polyleucine-based alpha-helical transmembrane peptide on its interaction with phosphatidylcholine bilayers
-
Liu F, Lewis RN, Hodges RS, McElhaney RN (2002) Effect of variations in the structure of a polyleucine-based alpha-helical transmembrane peptide on its interaction with phosphatidylcholine bilayers. Biochemistry 41 (29):9197-9207
-
(2002)
Biochemistry
, vol.41
, Issue.29
, pp. 9197-9207
-
-
Liu, F.1
Lewis, R.N.2
Hodges, R.S.3
McElhaney, R.N.4
-
34
-
-
16644377766
-
Effect of variations in the structure of a polyleucine-based alpha-helical transmembrane peptide on its interaction with phosphatidylethanolamine Bilayers
-
doi: 10.1529/biophysj.104.046342
-
Liu F, Lewis RN, Hodges RS, McElhaney RN (2004) Effect of variations in the structure of a polyleucine-based alpha-helical transmembrane peptide on its interaction with phosphatidylethanolamine Bilayers. Biophys J 87 (4):2470-2482. doi: 10.1529/biophysj.104.046342
-
(2004)
Biophys J
, vol.87
, Issue.4
, pp. 2470-2482
-
-
Liu, F.1
Lewis, R.N.2
Hodges, R.S.3
McElhaney, R.N.4
-
35
-
-
1642279990
-
Effect of variations in the structure of a polyleucine-based alpha-helical transmembrane peptide on its interaction with phosphatidylglycerol bilayers
-
doi: 10.1021/bi036214l
-
Liu F, Lewis RN, Hodges RS, McElhaney RN (2004) Effect of variations in the structure of a polyleucine-based alpha-helical transmembrane peptide on its interaction with phosphatidylglycerol bilayers. Biochemistry 43 (12): 3679-3687. doi: 10.1021/bi036214l
-
(2004)
Biochemistry
, vol.43
, Issue.12
, pp. 3679-3687
-
-
Liu, F.1
Lewis, R.N.2
Hodges, R.S.3
McElhaney, R.N.4
-
36
-
-
0028941129
-
Interaction of a peptide model of a hydrophobic transmembrane alpha-helical segment of a membrane protein with phosphatidylethanolamine bilayers: Differential scanning calorimetric and Fourier transform infrared spectroscopic studies
-
doi: 10.1016/S0006-3495 (95)80261-4
-
Zhang YP, Lewis RN, Hodges RS, McElhaney RN (1995) Interaction of a peptide model of a hydrophobic transmembrane alpha-helical segment of a membrane protein with phosphatidylethanolamine bilayers: differential scanning calorimetric and Fourier transform infrared spectroscopic studies. Biophys J 68 (3):847-857. doi: 10.1016/S0006-3495 (95)80261-4
-
(1995)
Biophys J
, vol.68
, Issue.3
, pp. 847-857
-
-
Zhang, Y.P.1
Lewis, R.N.2
Hodges, R.S.3
McElhaney, R.N.4
-
37
-
-
0035895347
-
Peptide models of the helical hydrophobic transmembrane segments of membrane proteins: Interactions of acetyl- K2- (LA)12-K2-amide with phosphatidylethanolamine bilayer membranes
-
Zhang YP, Lewis RN, Hodges RS, McElhaney RN (2001) Peptide models of the helical hydrophobic transmembrane segments of membrane proteins: interactions of acetyl- K2- (LA)12-K2-amide with phosphatidylethanolamine bilayer membranes. Biochemistry 40 (2):474-482
-
(2001)
Biochemistry
, vol.40
, Issue.2
, pp. 474-482
-
-
Zhang, Y.P.1
Lewis, R.N.2
Hodges, R.S.3
McElhaney, R.N.4
-
38
-
-
3042774119
-
Position and ionization state of Asp in the core of membrane- inserted alpha helices control both the equilibrium between transmembrane and nontransmembrane helix topography and transmembrane helix positioning
-
Caputo GA, London E (2004) Position and ionization state of Asp in the core of membrane- inserted alpha helices control both the equilibrium between transmembrane and nontransmembrane helix topography and transmembrane helix positioning. Biochemistry 43 (27):8794-8806
-
(2004)
Biochemistry
, vol.43
, Issue.27
, pp. 8794-8806
-
-
Caputo, G.A.1
London, E.2
-
39
-
-
0033522486
-
Control of the transmembrane orientation and interhelical interactions within membranes by hydrophobic helix length
-
Ren J, Lew S, Wang J, London E (1999) Control of the transmembrane orientation and interhelical interactions within membranes by hydrophobic helix length. Biochemistry 38 (18):5905-5912
-
(1999)
Biochemistry
, vol.38
, Issue.18
, pp. 5905-5912
-
-
Ren, J.1
Lew, S.2
Wang, J.3
London, E.4
-
40
-
-
0030738720
-
Transmembrane orientation of hydrophobic alpha-helices is regulated both by the relationship of helix length to bilayer thickness and by the cholesterol concentration
-
Ren J, Lew S, Wang Z, London E (1997) Transmembrane orientation of hydrophobic alpha-helices is regulated both by the relationship of helix length to bilayer thickness and by the cholesterol concentration. Biochemistry 36 (33):10213-10220
-
(1997)
Biochemistry
, vol.36
, Issue.33
, pp. 10213-10220
-
-
Ren, J.1
Lew, S.2
Wang, Z.3
London, E.4
-
41
-
-
36248978178
-
The control of transmembrane helix transverse position in membranes by hydrophilic residues
-
doi: 10.1016/j.jmb.2007.10.032
-
Krishnakumar SS, London E (2007) The control of transmembrane helix transverse position in membranes by hydrophilic residues. J Mol Biol 374 (5):1251-1269. doi: 10.1016/j.jmb.2007.10.032
-
(2007)
J Mol Biol
, vol.374
, Issue.5
, pp. 1251-1269
-
-
Krishnakumar, S.S.1
London, E.2
-
42
-
-
0025269179
-
Relationships between lipid membrane area, hydrophobic thickness, and acyl-chain orientational order. The effects of cholesterol
-
doi: 10.1016/ S0006-3495(90)82557-82561
-
Ipsen JH, Mouritsen OG, Bloom M (1990) Relationships between lipid membrane area, hydrophobic thickness, and acyl-chain orientational order. The effects of cholesterol. Biophys J 57 (3):405-412. doi: 10.1016/ S0006-3495 (90)82557-1
-
(1990)
Biophys J
, vol.57
, Issue.3
, pp. 405-412
-
-
Ipsen, J.H.1
Mouritsen, O.G.2
Bloom, M.3
-
43
-
-
0022718663
-
Determining bilayer hydrocarbon thickness from neutron diffraction measurements using strip-function models
-
doi: 10.1016/S0006-3495(86)83733-X
-
King GI, White SH (1986) Determining bilayer hydrocarbon thickness from neutron diffraction measurements using strip-function models. Biophys J 49 (5):1047-1054. doi: 10.1016/S0006-3495 (86)83733-X
-
(1986)
Biophys J
, vol.49
, Issue.5
, pp. 1047-1054
-
-
King, G.I.1
White, S.H.2
-
44
-
-
0021104058
-
Lipid bilayer thickness varies linearly with acyl chain length in fluid phosphatidylcholine vesicles
-
Lewis BA, Engelman DM (1983) Lipid bilayer thickness varies linearly with acyl chain length in fluid phosphatidylcholine vesicles. J Mol Biol 166 (2):211-217
-
(1983)
J Mol Biol
, vol.166
, Issue.2
, pp. 211-217
-
-
Lewis, B.A.1
Engelman, D.M.2
-
45
-
-
0033932837
-
Effect of chain length and unsaturation on elasticity of lipid bilayers
-
doi: 10.1016/S0006-3495 (00)76295-3
-
Rawicz W, Olbrich KC, McIntosh T, Needham D, Evans E (2000) Effect of chain length and unsaturation on elasticity of lipid bilayers. Biophys J 79 (1):328-339. doi: 10.1016/S0006-3495 (00)76295-3
-
(2000)
Biophys J
, vol.79
, Issue.1
, pp. 328-339
-
-
Rawicz, W.1
Olbrich, K.C.2
McIntosh, T.3
Needham, D.4
Evans, E.5
-
46
-
-
0037465698
-
Using a novel dual fluorescence quenching assay for measurement of tryptophan depth within lipid bilayers to determine hydrophobic alphahelix locations within membranes
-
Caputo GA, London E (2003) Using a novel dual fluorescence quenching assay for measurement of tryptophan depth within lipid bilayers to determine hydrophobic alphahelix locations within membranes. Biochemistry 42 (11):3265-3274
-
(2003)
Biochemistry
, vol.42
, Issue.11
, pp. 3265-3274
-
-
Caputo, G.A.1
London, E.2
-
47
-
-
77249173166
-
Repositioning of transmembrane alphahelices during membrane protein folding
-
doi: 10.1016/j. jmb.2010.01.042
-
Kauko A, Hedin LE, Thebaud E, Cristobal S, Elofsson A, von Heijne G (2010) Repositioning of transmembrane alphahelices during membrane protein folding. J Mol Biol 397 (1):190-201. doi: 10.1016/j. jmb.2010.01.042
-
(2010)
J Mol Biol
, vol.397
, Issue.1
, pp. 190-201
-
-
Kauko, A.1
Hedin, L.E.2
Thebaud, E.3
Cristobal, S.4
Elofsson, A.5
Von Heijne, G.6
-
48
-
-
0037298237
-
Stop-transfer efficiency of marginally hydrophobic segments depends on the length of the carboxy-terminal tail
-
doi: 10.1038/sj.embor.embor728
-
Hessa T, Monne M, von Heijne G (2003) Stop-transfer efficiency of marginally hydrophobic segments depends on the length of the carboxy-terminal tail. EMBO Rep 4 (2):178-183 doi: 10.1038/sj.embor.embor728
-
(2003)
EMBO Rep
, vol.4
, Issue.2
, pp. 178-183
-
-
Hessa, T.1
Monne, M.2
Von Heijne, G.3
-
49
-
-
0033527670
-
Turns in transmembrane helices: Determination of the minimal length of a "helical hairpin" and derivation of a fine- grained turn propensity scale
-
doi: 10.1006/jmbi.1999.3183
-
Monne M, Nilsson I, Elofsson A, von Heijne G (1999) Turns in transmembrane helices: determination of the minimal length of a "helical hairpin" and derivation of a fine- grained turn propensity scale. J Mol Biol 293 (4):807-814. doi: 10.1006/jmbi.1999.3183
-
(1999)
J Mol Biol
, vol.293
, Issue.4
, pp. 807-814
-
-
Monne, M.1
Nilsson, I.2
Elofsson, A.3
Von Heijne, G.4
-
50
-
-
0032509124
-
Positively and negatively charged residues have different effects on the position in the membrane of a model transmembrane helix
-
doi: 10.1006/jmbi.1998.2218
-
Monne M, Nilsson I, Johansson M, Elmhed N, von Heijne G (1998) Positively and negatively charged residues have different effects on the position in the membrane of a model transmembrane helix. J Mol Biol 284 (4):1177-1183. doi: 10.1006/jmbi.1998.2218
-
(1998)
J Mol Biol
, vol.284
, Issue.4
, pp. 1177-1183
-
-
Monne, M.1
Nilsson, I.2
Johansson, M.3
Elmhed, N.4
Von Heijne, G.5
-
51
-
-
0032509102
-
Prolineinduced disruption of a transmembrane alpha-helix in its natural environment
-
doi: 10.1006/ jmbi.1998.2217
-
Nilsson I, Saaf A, Whitley P, Gafvelin G, Waller C, von Heijne G (1998) Prolineinduced disruption of a transmembrane alpha-helix in its natural environment. J Mol Biol 284 (4):1165-1175. doi: 10.1006/ jmbi.1998.2217
-
(1998)
J Mol Biol
, vol.284
, Issue.4
, pp. 1165-1175
-
-
Nilsson, I.1
Saaf, A.2
Whitley, P.3
Gafvelin, G.4
Waller, C.5
Von Heijne, G.6
-
52
-
-
0026071516
-
Monte Carlo simulation studies of lipid order parameter profiles near integral membrane proteins
-
doi: 10.1016/ S0006-3495 (91)82219-6
-
Sperotto MM, Mouritsen OG (1991) Monte Carlo simulation studies of lipid order parameter profiles near integral membrane proteins. Biophys J 59 (2):261-270. doi: 10.1016/ S0006-3495 (91)82219-6
-
(1991)
Biophys J
, vol.59
, Issue.2
, pp. 261-270
-
-
Sperotto, M.M.1
Mouritsen, O.G.2
-
53
-
-
0033038093
-
Theoretical analysis of hydrophobic matching and membranemediated interactions in lipid bilayers containing gramicidin
-
doi: 10.1016/S0006-3495 (99)77469-2
-
Harroun TA, Heller WT, Weiss TM, Yang L, Huang HW (1999) Theoretical analysis of hydrophobic matching and membranemediated interactions in lipid bilayers containing gramicidin. Biophys J 76 (6):3176-3185. doi: 10.1016/S0006-3495 (99)77469-2
-
(1999)
Biophys J
, vol.76
, Issue.6
, pp. 3176-3185
-
-
Harroun, T.A.1
Heller, W.T.2
Weiss, T.M.3
Yang, L.4
Huang, H.W.5
-
54
-
-
0032988823
-
Experimental evidence for hydrophobic matching and membranemediated interactions in lipid bilayers containing gramicidin
-
doi: 10.1016/S0006-3495 (99)77257-7
-
Harroun TA, Heller WT, Weiss TM, Yang L, Huang HW (1999) Experimental evidence for hydrophobic matching and membranemediated interactions in lipid bilayers containing gramicidin. Biophys J 76 (2):937-945. doi: 10.1016/S0006-3495 (99)77257-7
-
(1999)
Biophys J
, vol.76
, Issue.2
, pp. 937-945
-
-
Harroun, T.A.1
Heller, W.T.2
Weiss, T.M.3
Yang, L.4
Huang, H.W.5
-
55
-
-
0035936573
-
A differential scanning calorimetric and 31P NMR spectroscopic study of the effect of transmembrane alpha-helical peptides on the lamellar-reversed hexagonal phase transition of phosphatidylethanolamine model membranes
-
Liu F, Lewis RN, Hodges RS, McElhaney RN (2001) A differential scanning calorimetric and 31P NMR spectroscopic study of the effect of transmembrane alpha-helical peptides on the lamellar-reversed hexagonal phase transition of phosphatidylethanolamine model membranes. Biochemistry 40 (3):760-768
-
(2001)
Biochemistry
, vol.40
, Issue.3
, pp. 760-768
-
-
Liu, F.1
Lewis, R.N.2
Hodges, R.S.3
McElhaney, R.N.4
-
56
-
-
0033783447
-
Alignment of lysine-anchored membrane peptides under conditions of hydrophobic mismatch: A CD, 15N and 31P solid-state NMR spectroscopy investigation
-
Harzer U, Bechinger B (2000) Alignment of lysine-anchored membrane peptides under conditions of hydrophobic mismatch: a CD, 15N and 31P solid-state NMR spectroscopy investigation. Biochemistry 39 (43):13106-13114
-
(2000)
Biochemistry
, vol.39
, Issue.43
, pp. 13106-13114
-
-
Harzer, U.1
Bechinger, B.2
-
57
-
-
15244348542
-
The conformation of the pore region of the M2 proton channel depends on lipid bilayer environment
-
doi: 10.1110/ps.041185805
-
Duong-Ly KC, Nanda V, Degrado WF, Howard KP (2005) The conformation of the pore region of the M2 proton channel depends on lipid bilayer environment. Protein Sci 14 (4):856-861. doi: 10.1110/ps.041185805
-
(2005)
Protein Sci
, vol.14
, Issue.4
, pp. 856-861
-
-
Duong-Ly, K.C.1
Nanda, V.2
Degrado, W.F.3
Howard, K.P.4
-
58
-
-
52249123874
-
PH- induced conformational change of the influenza M2 protein C-terminal domain
-
doi: 10.1021/bi801315m
-
Nguyen PA, Soto CS, Polishchuk A, Caputo GA, Tatko CD, Ma C, Ohigashi Y, Pinto LH, DeGrado WF, Howard KP (2008) pH- induced conformational change of the influenza M2 protein C-terminal domain. Biochemistry 47 (38):9934-9936. doi: 10.1021/bi801315m
-
(2008)
Biochemistry
, vol.47
, Issue.38
, pp. 9934-9936
-
-
Nguyen, P.A.1
Soto, C.S.2
Polishchuk, A.3
Caputo, G.A.4
Tatko, C.D.5
Ma, C.6
Ohigashi, Y.7
Pinto, L.H.8
Degrado, W.F.9
Howard, K.P.10
-
59
-
-
2942662220
-
Tilt angles of transmembrane model peptides in oriented and nonoriented lipid bilayers as determined by 2H solid-state NMR
-
doi: 10.1529/biophysj.103.035402
-
Strandberg E, Ozdirekcan S, Rijkers DT, van der Wel PC, Koeppe RE II, Liskamp RM, Killian JA (2004) Tilt angles of transmembrane model peptides in oriented and nonoriented lipid bilayers as determined by 2H solid-state NMR. Biophys J 86 (6):3709-3721. doi: 10.1529/biophysj.103.035402
-
(2004)
Biophys J
, vol.86
, Issue.6
, pp. 3709-3721
-
-
Strandberg, E.1
Ozdirekcan, S.2
Rijkers, D.T.3
Van Der Wel, P.C.4
Koeppe, R.E.I.I.5
Liskamp, R.M.6
Killian, J.A.7
-
60
-
-
0036708458
-
Geometry and intrinsic tilt of a tryptophan-anchored transmembrane alpha-helix determined by (2)H NMR
-
doi: 10.1016/ S0006-3495 (02)73918-0
-
van der Wel PC, Strandberg E, Killian JA, Koeppe RE II (2002) Geometry and intrinsic tilt of a tryptophan-anchored transmembrane alpha-helix determined by (2)H NMR. Biophys J 83 (3):1479-1488. doi: 10.1016/ S0006-3495 (02)73918-0
-
(2002)
Biophys J
, vol.83
, Issue.3
, pp. 1479-1488
-
-
Van Der Wel, P.C.1
Strandberg, E.2
Killian, J.A.3
Koeppe, R.E.I.I.4
-
61
-
-
0035942298
-
Sensitivity of single membrane-spanning alpha-helical peptides to hydrophobic mismatch with a lipid bilayer: Effects on backbone structure, orientation, and extent of membrane incorporation
-
de Planque MR, Goormaghtigh E, Greathouse DV, Koeppe RE II, Kruijtzer JA, Liskamp RM, de Kruijff B, Killian JA (2001) Sensitivity of single membrane-spanning alpha-helical peptides to hydrophobic mismatch with a lipid bilayer: effects on backbone structure, orientation, and extent of membrane incorporation. Biochemistry 40 (16):5000-5010
-
(2001)
Biochemistry
, vol.40
, Issue.16
, pp. 5000-5010
-
-
De Planque, M.R.1
Goormaghtigh, E.2
Greathouse, D.V.3
Koeppe, R.E.I.I.4
Kruijtzer, J.A.5
Liskamp, R.M.6
De Kruijff, B.7
Killian, J.A.8
-
62
-
-
56049103780
-
Conformation and membrane orientation of amphiphilic helical peptides by oriented circular dichroism
-
doi: 10.1529/biophysj.108.136085
-
Burck J, Roth S, Wadhwani P, Afonin S, Kanithasen N, Strandberg E, Ulrich AS (2008) Conformation and membrane orientation of amphiphilic helical peptides by oriented circular dichroism. Biophys J 95 (8):3872-3881. doi: 10.1529/biophysj.108.136085
-
(2008)
Biophys J
, vol.95
, Issue.8
, pp. 3872-3881
-
-
Burck, J.1
Roth, S.2
Wadhwani, P.3
Afonin, S.4
Kanithasen, N.5
Strandberg, E.6
Ulrich, A.S.7
-
63
-
-
0034738609
-
Oriented circular dichroism of a class A amphipathic helix in aligned phospholipid multilayers
-
Clayton AH, Sawyer WH (2000) Oriented circular dichroism of a class A amphipathic helix in aligned phospholipid multilayers. Biochim Biophys Acta 1467 (1):124-130
-
(2000)
Biochim Biophys Acta
, vol.1467
, Issue.1
, pp. 124-130
-
-
Clayton, A.H.1
Sawyer, W.H.2
-
64
-
-
0342804291
-
Chirality and circular dichroism of oriented molecules and anisotropic phases
-
Kuball HG, Hofer T (2000) Chirality and circular dichroism of oriented molecules and anisotropic phases. Chirality 12 (4):278-286. doi: 10.1002/ (SICI)1520-636X (2000)12: 43.0.CO;2-O
-
(2000)
Chirality
, vol.12
, Issue.4
, pp. 278-286
-
-
Kuball, H.G.1
Hofer, T.2
-
65
-
-
0028598299
-
Analysis of circular dichroism spectra of oriented protein-lipid complexes: Toward a general application
-
de Jongh HH, Goormaghtigh E, Killian JA (1994) Analysis of circular dichroism spectra of oriented protein-lipid complexes: toward a general application. Biochemistry 33 (48): 14521-14528
-
(1994)
Biochemistry
, vol.33
, Issue.48
, pp. 14521-14528
-
-
De Jongh, H.H.1
Goormaghtigh, E.2
Killian, J.A.3
-
66
-
-
0025278431
-
Method of oriented circular dichroism
-
doi: 10.1016/S0006-3495 (90)82599-6
-
Wu Y, Huang HW, Olah GA (1990) Method of oriented circular dichroism. Biophys J 57 (4):797-806. doi: 10.1016/S0006-3495 (90)82599-6
-
(1990)
Biophys J
, vol.57
, Issue.4
, pp. 797-806
-
-
Wu, Y.1
Huang, H.W.2
Olah, G.A.3
-
67
-
-
0034459184
-
Attenuated total reflection IR spectroscopy as a tool to investigate the structure, orientation and tertiary structure changes in peptides and membrane proteins
-
Vigano C, Manciu L, Buyse F, Goormaghtigh E, Ruysschaert JM (2000) Attenuated total reflection IR spectroscopy as a tool to investigate the structure, orientation and tertiary structure changes in peptides and membrane proteins. Biopolymers 55 (5):373-380. d o i : 10.1002/1097- 0282 (2000)55: 53.0.CO;2-U
-
(2000)
Biopolymers
, vol.55
, Issue.5
, pp. 373-380
-
-
Vigano, C.1
Manciu, L.2
Buyse, F.3
Goormaghtigh, E.4
Ruysschaert, J.M.5
-
68
-
-
0027367861
-
Interaction of myelin basic protein with single bilayers on a solid support: An NMR, DSC and polarized infrared ATR study
-
Reinl HM, Bayerl TM (1993) Interaction of myelin basic protein with single bilayers on a solid support: an NMR, DSC and polarized infrared ATR study. Biochim Biophys Acta 1151 (2):127-136
-
(1993)
Biochim Biophys Acta
, vol.1151
, Issue.2
, pp. 127-136
-
-
Reinl, H.M.1
Bayerl, T.M.2
-
69
-
-
0025993413
-
Orientation of melittin in phospholipid bilayers. A polarized attenuated total reflection infrared study
-
doi: 10.1016/ S0006-3495 (91)82126-9
-
Frey S, Tamm LK (1991) Orientation of melittin in phospholipid bilayers. A polarized attenuated total reflection infrared study. Biophys J 60 (4):922-930. doi: 10.1016/ S0006-3495 (91)82126-9
-
(1991)
Biophys J
, vol.60
, Issue.4
, pp. 922-930
-
-
Frey, S.1
Tamm, L.K.2
-
70
-
-
33845995843
-
Activation of platelet alphaIIbbeta3 by an exogenous peptide corresponding to the transmembrane domain of alphaIIb
-
doi: 10.1074/jbc.M605877200
-
Yin H, Litvinov RI, Vilaire G, Zhu H, Li W, Caputo GA, Moore DT, Lear JD, Weisel JW, Degrado WF, Bennett JS (2006) Activation of platelet alphaIIbbeta3 by an exogenous peptide corresponding to the transmembrane domain of alphaIIb. J Biol Chem 281 (48):36732-36741. doi: 10.1074/jbc.M605877200
-
(2006)
J Biol Chem
, vol.281
, Issue.48
, pp. 36732-36741
-
-
Yin, H.1
Litvinov, R.I.2
Vilaire, G.3
Zhu, H.4
Li, W.5
Caputo, G.A.6
Moore, D.T.7
Lear, J.D.8
Weisel, J.W.9
Degrado, W.F.10
Bennett, J.S.11
-
71
-
-
34147130190
-
Computational design of peptides that target transmembrane helices
-
doi: 10.1126/science.1136782
-
Yin H, Slusky JS, Berger BW, Walters RS, Vilaire G, Litvinov RI, Lear JD, Caputo GA, Bennett JS, DeGrado WF (2007) Computational design of peptides that target transmembrane helices. Science 315 (5820): 1817-1822. doi: 10.1126/science.1136782
-
(2007)
Science
, vol.315
, Issue.5820
, pp. 1817-1822
-
-
Yin, H.1
Slusky, J.S.2
Berger, B.W.3
Walters, R.S.4
Vilaire, G.5
Litvinov, R.I.6
Lear, J.D.7
Caputo, G.A.8
Bennett, J.S.9
Degrado, W.F.10
-
72
-
-
0028879250
-
The infrared dichroism of transmembrane helical polypeptides
-
doi: 10.1016/ S0006-3495 (95)80150-5
-
Axelsen PH, Kaufman BK, McElhaney RN, Lewis RN (1995) The infrared dichroism of transmembrane helical polypeptides. Biophys J 69 (6):2770-2781. doi: 10.1016/ S0006-3495 (95)80150-5
-
(1995)
Biophys J
, vol.69
, Issue.6
, pp. 2770-2781
-
-
Axelsen, P.H.1
Kaufman, B.K.2
McElhaney, R.N.3
Lewis, R.N.4
-
73
-
-
78650627501
-
Membrane docking of the C2 domain from protein kinase Calpha as seen by polarized ATR-IR. The role of PIP (2)
-
doi: 10.1016/j.bbamem.2010.11.035
-
Ausili A, Corbalan-Garcia S, Gomez- Fernandez JC, Marsh D (2011) Membrane docking of the C2 domain from protein kinase Calpha as seen by polarized ATR-IR. The role of PIP (2). Biochim Biophys Acta 1808 (3):684-695. doi: 10.1016/j.bbamem.2010.11.035
-
(2011)
Biochim Biophys Acta
, vol.1808
, Issue.3
, pp. 684-695
-
-
Ausili, A.1
Corbalan-Garcia, S.2
Gomez-Fernandez, J.C.3
Marsh, D.4
-
74
-
-
70350322975
-
In-plane and out-of-plane infrared difference spectroscopy unravels tilting of helices and structural changes in a membrane protein upon substrate binding
-
doi: 10.1021/ ja906324z
-
Lorenz-Fonfria VA, Granell M, Leon X, Leblanc G, Padros E (2009) In-plane and out-of-plane infrared difference spectroscopy unravels tilting of helices and structural changes in a membrane protein upon substrate binding. J Am Chem Soc 131 (42):15094-15095. doi: 10.1021/ ja906324z
-
(2009)
J Am Chem Soc
, vol.131
, Issue.42
, pp. 15094-15095
-
-
Lorenz-Fonfria, V.A.1
Granell, M.2
Leon, X.3
Leblanc, G.4
Padros, E.5
-
75
-
-
0037379072
-
How do helix-helix interactions help determine the folds of membrane proteins? Perspectives from the study of homooligomeric helical bundles
-
DeGrado WF, Gratkowski H, Lear JD (2003) How do helix-helix interactions help determine the folds of membrane proteins? Perspectives from the study of homooligomeric helical bundles. Protein Sci 12 (4): 647-665
-
(2003)
Protein Sci
, vol.12
, Issue.4
, pp. 647-665
-
-
Degrado, W.F.1
Gratkowski, H.2
Lear, J.D.3
-
76
-
-
13844284976
-
Association of a model transmembrane peptide containing gly in a heptad sequence motif
-
doi: 10.1529/biophysj.103.032839
-
Lear JD, Stouffer AL, Gratkowski H, Nanda V, Degrado WF (2004) Association of a model transmembrane peptide containing gly in a heptad sequence motif. Biophys J 87 (5):3421-3429. doi: 10.1529/biophysj.103.032839
-
(2004)
Biophys J
, vol.87
, Issue.5
, pp. 3421-3429
-
-
Lear, J.D.1
Stouffer, A.L.2
Gratkowski, H.3
Nanda, V.4
Degrado, W.F.5
-
77
-
-
0029117442
-
Theory and application of fluorescence homotransfer to melittin oligomerization
-
doi: 10.1016/S0006-3495 (95)80030-5
-
Runnels LW, Scarlata SF (1995) Theory and application of fluorescence homotransfer to melittin oligomerization. Biophys J 69 (4): 1569-1583. doi: 10.1016/S0006-3495 (95) 80030-5
-
(1995)
Biophys J
, vol.69
, Issue.4
, pp. 1569-1583
-
-
Runnels, L.W.1
Scarlata, S.F.2
-
78
-
-
15544385324
-
Forster resonance energy transfer in liposomes: Measurements of transmembrane helix dimerization in the native bilayer environment
-
doi: 10.1016/j.ab.2005.01.035
-
You M, Li E, Wimley WC, Hristova K (2005) Forster resonance energy transfer in liposomes: measurements of transmembrane helix dimerization in the native bilayer environment. Anal Biochem 340 (1):154-164. doi: 10.1016/j.ab.2005.01.035
-
(2005)
Anal Biochem
, vol.340
, Issue.1
, pp. 154-164
-
-
You, M.1
Li, E.2
Wimley, W.C.3
Hristova, K.4
-
79
-
-
0041317291
-
The effect of interactions involving ionizable residues flanking membrane-inserted hydrophobic helices upon helix-helix interaction
-
Lew S, Caputo GA, London E (2003) The effect of interactions involving ionizable residues flanking membrane-inserted hydrophobic helices upon helix-helix interaction. Biochemistry 42 (36):10833-10842
-
(2003)
Biochemistry
, vol.42
, Issue.36
, pp. 10833-10842
-
-
Lew, S.1
Caputo, G.A.2
London, E.3
-
80
-
-
0031571617
-
Simple procedure for reversed-phase high-performance liquid chromatographic purification of long hydrophobic peptides that form transmembrane helices
-
Lew S, London E (1997) Simple procedure for reversed-phase high-performance liquid chromatographic purification of long hydrophobic peptides that form transmembrane helices. Anal Biochem 251 (1):113-116
-
(1997)
Anal Biochem
, vol.251
, Issue.1
, pp. 113-116
-
-
Lew, S.1
London, E.2
-
81
-
-
0031005647
-
Distribution analysis of depth-dependent fluorescence quenching in membranes: A practical guide
-
Ladokhin AS (1997) Distribution analysis of depth-dependent fluorescence quenching in membranes: a practical guide. Methods Enzymol 278:462-473
-
(1997)
Methods Enzymol
, vol.278
, pp. 462-473
-
-
Ladokhin, A.S.1
-
82
-
-
0026766835
-
Calibration of the parallax fluorescence quenching method for determination of membrane penetration depth: Refinement and comparison of quenching by spin-labeled and brominated lipids
-
Abrams FS, London E (1992) Calibration of the parallax fluorescence quenching method for determination of membrane penetration depth: refinement and comparison of quenching by spin-labeled and brominated lipids. Biochemistry 31 (23):5312-5322
-
(1992)
Biochemistry
, vol.31
, Issue.23
, pp. 5312-5322
-
-
Abrams, F.S.1
London, E.2
-
83
-
-
0023652259
-
Parallax method for direct measurement of membrane penetration depth utilizing fluorescence quenching by spin-labeled phospholipids
-
Chattopadhyay A, London E (1987) Parallax method for direct measurement of membrane penetration depth utilizing fluorescence quenching by spin-labeled phospholipids. Biochemistry 26 (1):39-45
-
(1987)
Biochemistry
, vol.26
, Issue.1
, pp. 39-45
-
-
Chattopadhyay, A.1
London, E.2
-
84
-
-
0025051457
-
Quenching of tryptophan fluorescence by brominated phospholipid
-
Bolen EJ, Holloway PW (1990) Quenching of tryptophan fluorescence by brominated phospholipid. Biochemistry 29 (41):9638-9643
-
(1990)
Biochemistry
, vol.29
, Issue.41
, pp. 9638-9643
-
-
Bolen, E.J.1
Holloway, P.W.2
-
85
-
-
33846399142
-
E (z),a depthdependent potential for assessing the energies of insertion of amino acid side-chains into membranes: Derivation and applications to determining the orientation of transmembrane and interfacial helices
-
Senes A, Chadi DC, Law PB, Walters RF, Nanda V, Degrado WF (2007) E (z), a depthdependent potential for assessing the energies of insertion of amino acid side-chains into membranes: derivation and applications to determining the orientation of transmembrane and interfacial helices. J Mol Biol 366 (2):436-448
-
(2007)
J Mol Biol
, vol.366
, Issue.2
, pp. 436-448
-
-
Senes, A.1
Chadi, D.C.2
Law, P.B.3
Walters, R.F.4
Nanda, V.5
Degrado, W.F.6
-
86
-
-
84861038844
-
Knowledge-based potential for positioning membrane-associated structures and assessing residue-specific energetic contributions
-
doi: 10.1016/j.str.2012.03.016
-
Schramm CA, Hannigan BT, Donald JE, Keasar C, Saven JG, Degrado WF, Samish I (2012) Knowledge-based potential for positioning membrane-associated structures and assessing residue-specific energetic contributions. Structure 20 (5):924-935. doi: 10.1016/j.str.2012.03.016
-
(2012)
Structure
, vol.20
, Issue.5
, pp. 924-935
-
-
Schramm, C.A.1
Hannigan, B.T.2
Donald, J.E.3
Keasar, C.4
Saven, J.G.5
Degrado, W.F.6
Samish, I.7
-
87
-
-
0027499143
-
Non-random distribution of amino acids in the transmembrane segments of human type i single span membrane proteins
-
doi: 10.1006/jmbi.1993.1066
-
Landolt-Marticorena C, Williams KA, Deber CM, Reithmeier RA (1993) Non-random distribution of amino acids in the transmembrane segments of human type I single span membrane proteins. J Mol Biol 229 (3): 602-608. doi: 10.1006/jmbi.1993.1066
-
(1993)
J Mol Biol
, vol.229
, Issue.3
, pp. 602-608
-
-
Landolt-Marticorena, C.1
Williams, K.A.2
Deber, C.M.3
Reithmeier, R.A.4
-
88
-
-
84857737028
-
Hydrophobic mismatch of mobile transmembrane helices: Merging theory and experiments
-
doi: 10.1016/j. bbamem.2012.01.023
-
Strandberg E, Esteban-Martin S, Ulrich AS, Salgado J (2012) Hydrophobic mismatch of mobile transmembrane helices: merging theory and experiments. Biochim Biophys Acta 1818 (5):1242-1249. doi: 10.1016/j. bbamem.2012.01.023
-
(2012)
Biochim Biophys Acta
, vol.1818
, Issue.5
, pp. 1242-1249
-
-
Strandberg, E.1
Esteban-Martin, S.2
Ulrich, A.S.3
Salgado, J.4
-
89
-
-
77952093470
-
Orientation and dynamics of transmembrane peptides: The power of simple models
-
doi: 10.1007/s00249-009-0567-1
-
Holt A, Killian JA (2010) Orientation and dynamics of transmembrane peptides: the power of simple models. Eur Biophys J 39 (4): 609-621. doi: 10.1007/s00249-009-0567-1
-
(2010)
Eur Biophys J
, vol.39
, Issue.4
, pp. 609-621
-
-
Holt, A.1
Killian, J.A.2
-
90
-
-
37049023237
-
On the orientation of a designed transmembrane peptide: Toward the right tilt angle?
-
doi: 10.1021/ja073784q
-
Ozdirekcan S, Etchebest C, Killian JA, Fuchs PF (2007) On the orientation of a designed transmembrane peptide: toward the right tilt angle? J Am Chem Soc 129 (49): 15174-15181. doi: 10.1021/ja073784q
-
(2007)
J Am Chem Soc
, vol.129
, Issue.49
, pp. 15174-15181
-
-
Ozdirekcan, S.1
Etchebest, C.2
Killian, J.A.3
Fuchs, P.F.4
-
91
-
-
70350031590
-
Alamethicin aggregation in lipid membranes
-
doi: 10.1007/ s00232-009-9199-8
-
Pan J, Tristram-Nagle S, Nagle JF (2009) Alamethicin aggregation in lipid membranes. J Membr Biol 231 (1):11-27. doi: 10.1007/ s00232-009-9199-8
-
(2009)
J Membr Biol
, vol.231
, Issue.1
, pp. 11-27
-
-
Pan, J.1
Tristram-Nagle, S.2
Nagle, J.F.3
-
92
-
-
0242405501
-
Synthetic peptides as models for intrinsic membrane proteins
-
Killian JA (2003) Synthetic peptides as models for intrinsic membrane proteins. FEBS Lett 555 (1):134-138
-
(2003)
FEBS Lett
, vol.555
, Issue.1
, pp. 134-138
-
-
Killian, J.A.1
-
93
-
-
0242659352
-
Proteinlipid interactions studied with designed transmembrane peptides: Role of hydrophobic matching and interfacial anchoring
-
doi: 10.1080/09687680310001605352
-
de Planque MR, Killian JA (2003) Proteinlipid interactions studied with designed transmembrane peptides: role of hydrophobic matching and interfacial anchoring. Mol Membr Biol 20 (4):271-284. doi: 10.1080/0 9687680310001605352
-
(2003)
Mol Membr Biol
, vol.20
, Issue.4
, pp. 271-284
-
-
De Planque, M.R.1
Killian, J.A.2
-
94
-
-
84860478724
-
Proline kink angle distributions for GWALP23 in lipid bilayers of different thicknesses
-
doi: 10.1021/bi300281k
-
Rankenberg JM, Vostrikov VV, DuVall CD, Greathouse DV, Koeppe RE II, Grant CV, Opella SJ (2012) Proline kink angle distributions for GWALP23 in lipid bilayers of different thicknesses. Biochemistry 51 (17): 3554-3564. doi: 10.1021/bi300281k
-
(2012)
Biochemistry
, vol.51
, Issue.17
, pp. 3554-3564
-
-
Rankenberg, J.M.1
Vostrikov, V.V.2
Duvall, C.D.3
Greathouse, D.V.4
Koeppe, R.E.I.I.5
Grant, C.V.6
Opella, S.J.7
-
95
-
-
44149116437
-
Effect of lipid composition on the topography of membrane- associated hydrophobic helices: Stabilization of transmembrane topography by anionic lipids
-
doi: 10.1016/j.jmb.2008.04.026
-
Shahidullah K, London E (2008) Effect of lipid composition on the topography of membrane- associated hydrophobic helices: stabilization of transmembrane topography by anionic lipids. J Mol Biol 379 (4):704-718. doi: 10.1016/j.jmb.2008.04.026
-
(2008)
J Mol Biol
, vol.379
, Issue.4
, pp. 704-718
-
-
Shahidullah, K.1
London, E.2
-
96
-
-
0017396567
-
Vesicles of variable diameter prepared by a modified injection method
-
Kremer JM, Esker MW, Pathmamanoharan C, Wiersema PH (1977) Vesicles of variable diameter prepared by a modified injection method. Biochemistry 16 (17):3932-3935
-
(1977)
Biochemistry
, vol.16
, Issue.17
, pp. 3932-3935
-
-
Kremer, J.M.1
Esker, M.W.2
Pathmamanoharan, C.3
Wiersema, P.H.4
-
97
-
-
0017511458
-
Dynamics of phospholipid aggregation in ethanol-water solutions
-
Aarts PA, Gijeman OL, Kremer JM, Wiersema PH (1977) Dynamics of phospholipid aggregation in ethanol-water solutions. Chem Phys Lipids 19 (3):267-274
-
(1977)
Chem Phys Lipids
, vol.19
, Issue.3
, pp. 267-274
-
-
Aarts, P.A.1
Gijeman, O.L.2
Kremer, J.M.3
Wiersema, P.H.4
-
98
-
-
34547640055
-
Using model membraneinserted hydrophobic helices to study the equilibrium between transmembrane and nontransmembrane states
-
London E (2007) Using model membraneinserted hydrophobic helices to study the equilibrium between transmembrane and nontransmembrane states. J Gen Physiol 130 (2): 229-232
-
(2007)
J Gen Physiol
, vol.130
, Issue.2
, pp. 229-232
-
-
London, E.1
-
99
-
-
74649085539
-
The effect of hydrophilic substitutions and anionic lipids upon the transverse positioning of the transmembrane helix of the ErbB2 (neu) protein incorporated into model membrane vesicles
-
doi: 10.1016/j.jmb.2009.11.037
-
Shahidullah K, Krishnakumar SS, London E (2010) The effect of hydrophilic substitutions and anionic lipids upon the transverse positioning of the transmembrane helix of the ErbB2 (neu) protein incorporated into model membrane vesicles. J Mol Biol 396 (1): 209-220. doi: 10.1016/j.jmb.2009.11.037
-
(2010)
J Mol Biol
, vol.396
, Issue.1
, pp. 209-220
-
-
Shahidullah, K.1
Krishnakumar, S.S.2
London, E.3
-
100
-
-
0028142681
-
Effect of charged residue substitutions on the membrane- interactive properties of signal sequences of the Escherichia coli LamB protein
-
doi: 10.1016/ S0006-3495 (94)80627-7
-
Jones JD, Gierasch LM (1994) Effect of charged residue substitutions on the membrane- interactive properties of signal sequences of the Escherichia coli LamB protein. Biophys J 67 (4):1534-1545. doi: 10.1016/ S0006-3495 (94)80627-7
-
(1994)
Biophys J
, vol.67
, Issue.4
, pp. 1534-1545
-
-
Jones, J.D.1
Gierasch, L.M.2
-
102
-
-
0034672769
-
Small-angle neutron scattering study of the n-decane effect on the bilayer thickness in extruded unilamellar dioleoylphosphatidylcholine liposomes
-
Uhrikova D, Balgavy P, Kucerka N, Islamov A, Gordeliy V, Kuklin A (2000) Small-angle neutron scattering study of the n-decane effect on the bilayer thickness in extruded unilamellar dioleoylphosphatidylcholine liposomes. Biophys Chem 88 (1-3): 165-170
-
(2000)
Biophys Chem
, vol.88
, Issue.1-3
, pp. 165-170
-
-
Uhrikova, D.1
Balgavy, P.2
Kucerka, N.3
Islamov, A.4
Gordeliy, V.5
Kuklin, A.6
-
103
-
-
0026704101
-
Combined influence of cholesterol and synthetic amphiphillic peptides upon bilayer thickness in model membranes
-
doi: 10.1016/S0006-3495 (92)81926-4
-
Nezil FA, Bloom M (1992) Combined influence of cholesterol and synthetic amphiphillic peptides upon bilayer thickness in model membranes. Biophys J 61 (5):1176-1183. doi: 10.1016/S0006-3495 (92)81926-4
-
(1992)
Biophys J
, vol.61
, Issue.5
, pp. 1176-1183
-
-
Nezil, F.A.1
Bloom, M.2
-
104
-
-
79953255545
-
Methyl-beta-cyclodextrins preferentially remove cholesterol from the liquid disordered phase in giant unilamellar vesicles
-
doi: 10.1007/ s00232-011-9348-8
-
Sanchez SA, Gunther G, Tricerri MA, Gratton E (2011) Methyl-beta- cyclodextrins preferentially remove cholesterol from the liquid disordered phase in giant unilamellar vesicles. J Membr Biol 241 (1):1-10. doi: 10.1007/ s00232-011-9348-8
-
(2011)
J Membr Biol
, vol.241
, Issue.1
, pp. 1-10
-
-
Sanchez, S.A.1
Gunther, G.2
Tricerri, M.A.3
Gratton, E.4
-
105
-
-
0242385346
-
Separation of liquid phases in giant vesicles of ternary mixtures of phospholipids and cholesterol
-
doi: 10.1016/ S0006-3495 (03)74726-2
-
Veatch SL, Keller SL (2003) Separation of liquid phases in giant vesicles of ternary mixtures of phospholipids and cholesterol. Biophys J 85 (5):3074-3083. doi: 10.1016/ S0006-3495 (03) 74726-2
-
(2003)
Biophys J
, vol.85
, Issue.5
, pp. 3074-3083
-
-
Veatch, S.L.1
Keller, S.L.2
-
106
-
-
49749131164
-
Computationally designed peptide inhibitors of proteinprotein interactions in membranes
-
doi: 10.1021/ bi800687h
-
Caputo GA, Litvinov RI, Li W, Bennett JS, Degrado WF, Yin H (2008) Computationally designed peptide inhibitors of proteinprotein interactions in membranes. Biochemistry 47 (33):8600-8606. doi: 10.1021/ bi800687h
-
(2008)
Biochemistry
, vol.47
, Issue.33
, pp. 8600-8606
-
-
Caputo, G.A.1
Litvinov, R.I.2
Li, W.3
Bennett, J.S.4
Degrado, W.F.5
Yin, H.6
-
107
-
-
13544273837
-
Topography of diphtheria toxin A chain inserted into lipid vesicles
-
Hayashibara M, London E (2005) Topography of diphtheria toxin A chain inserted into lipid vesicles. Biochemistry 44 (6): 2183-2196
-
(2005)
Biochemistry
, vol.44
, Issue.6
, pp. 2183-2196
-
-
Hayashibara, M.1
London, E.2
-
108
-
-
18244428625
-
Conformational adaptation of annexin v upon binding to liposomes: A time-resolved fluorescence study
-
doi: 10.1006/ bbrc.1997.6596
-
Follenius-Wund A, Piemont E, Freyssinet JM, Gerard D, Pigault C (1997) Conformational adaptation of annexin V upon binding to liposomes: a time-resolved fluorescence study. Biochem Biophys Res Commun 234 (1):111-116. doi: 10.1006/ bbrc.1997.6596
-
(1997)
Biochem Biophys Res Commun
, vol.234
, Issue.1
, pp. 111-116
-
-
Follenius-Wund, A.1
Piemont, E.2
Freyssinet, J.M.3
Gerard, D.4
Pigault, C.5
|