-
1
-
-
2442647912
-
Two motifs within a transmembrane domain, one for homodimerization and the other for heterodimerization
-
Gerber, D., Sal-Man, N., and Shai, Y. (2004) Two motifs within a transmembrane domain, one for homodimerization and the other for heterodimerization, J. Biol. Chem. 279, 21177-21182.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 21177-21182
-
-
Gerber, D.1
Sal-Man, N.2
Shai, Y.3
-
2
-
-
58149146156
-
Design of Transmembrane Proteins
-
RajBhandary, T, and Koehrer, C, Eds, Springer Verlag, New York, in press
-
Slusky, J. S., Yin, H., and DeGrado, W. F. Design of Transmembrane Proteins, in Protein Engineering (RajBhandary, T., and Koehrer, C., Eds.), Springer Verlag, New York, in press.
-
Protein Engineering
-
-
Slusky, J.S.1
Yin, H.2
DeGrado, W.F.3
-
3
-
-
33947213875
-
Membrane protein prediction methods
-
Punta, M., Forrest, L. R., Bigelow, H., Kernytsky, A., Liu, J., and Rost, B. (2007) Membrane protein prediction methods, Methods 41, 460-474.
-
(2007)
Methods
, vol.41
, pp. 460-474
-
-
Punta, M.1
Forrest, L.R.2
Bigelow, H.3
Kernytsky, A.4
Liu, J.5
Rost, B.6
-
5
-
-
0038499536
-
Sequence context strongly modulates association of polar residues in transmembrane helices
-
Dawson, J. P., Melnyk, R. A., Deber, C. M., and Engelman, D. M. (2003) Sequence context strongly modulates association of polar residues in transmembrane helices, J. Mol. Biol. 331, 255-262.
-
(2003)
J. Mol. Biol
, vol.331
, pp. 255-262
-
-
Dawson, J.P.1
Melnyk, R.A.2
Deber, C.M.3
Engelman, D.M.4
-
6
-
-
5144227144
-
Motifs of two small residues can assist but are not sufficient to mediate transmembrane helix interactions
-
Schneider, D., and Engelman, D. M. (2004) Motifs of two small residues can assist but are not sufficient to mediate transmembrane helix interactions, J. Mol. Biol. 343, 799-804.
-
(2004)
J. Mol. Biol
, vol.343
, pp. 799-804
-
-
Schneider, D.1
Engelman, D.M.2
-
7
-
-
0036301006
-
Motifs of serine and threonine can drive association of transmembrane helices
-
Dawson, J. P., Weinger, J. S., and Engelman, D. M. (2002) Motifs of serine and threonine can drive association of transmembrane helices, J. Mol. Biol. 316, 799-805.
-
(2002)
J. Mol. Biol
, vol.316
, pp. 799-805
-
-
Dawson, J.P.1
Weinger, J.S.2
Engelman, D.M.3
-
8
-
-
0034711953
-
The GxxxG motif: A framework for transmembrane helix-helix association
-
Russ, W. P., and Engelman, D. M. (2000) The GxxxG motif: a framework for transmembrane helix-helix association, J. Mol. Biol. 296, 911-919.
-
(2000)
J. Mol. Biol
, vol.296
, pp. 911-919
-
-
Russ, W.P.1
Engelman, D.M.2
-
9
-
-
33846399142
-
Ez, a depth-dependent potential for assessing the energies of insertion of amino acid side-chains into membranes: Derivation and applications to determining the orientation of transmembrane and interfacial helices
-
Senes, A., Chadi, D. C., Law, P. B., Walters, R. F. S., Nanda, V., and DeGrado, W. F. (2007) Ez, a depth-dependent potential for assessing the energies of insertion of amino acid side-chains into membranes: derivation and applications to determining the orientation of transmembrane and interfacial helices, J. Mol. Biol. 366, 436-448.
-
(2007)
J. Mol. Biol
, vol.366
, pp. 436-448
-
-
Senes, A.1
Chadi, D.C.2
Law, P.B.3
Walters, R.F.S.4
Nanda, V.5
DeGrado, W.F.6
-
10
-
-
0029738872
-
Experimentally determined hydrophobicity scale for proteins at membrane interfaces
-
Wimley, W. C., and White, S. H. (1996) Experimentally determined hydrophobicity scale for proteins at membrane interfaces, Nat. Struct. Mol. Biol. 3, 842-848.
-
(1996)
Nat. Struct. Mol. Biol
, vol.3
, pp. 842-848
-
-
Wimley, W.C.1
White, S.H.2
-
11
-
-
0033609498
-
The aromatic residues Trp and Phe have different effects on the positioning of a transmembrane helix in the microsomal membrane
-
Braun, P., and von Heijne, G. (1999) The aromatic residues Trp and Phe have different effects on the positioning of a transmembrane helix in the microsomal membrane, Biochemistry 38, 9778-9782.
-
(1999)
Biochemistry
, vol.38
, pp. 9778-9782
-
-
Braun, P.1
von Heijne, G.2
-
12
-
-
0034284386
-
How proteins adapt to a membrane-water interface
-
Killian, J. A., and von Heijne, G. (2000) How proteins adapt to a membrane-water interface, Trends Biochem. Sci. 25, 429-434.
-
(2000)
Trends Biochem. Sci
, vol.25
, pp. 429-434
-
-
Killian, J.A.1
von Heijne, G.2
-
13
-
-
0027499143
-
Non-random distribution of amino acids in the transmembrane segments of human type I single span membrane proteins
-
Landolt-Marticorena, C., Williams, K. A., Deber, C. M., and Reithmeier, R. A. F. (1993) Non-random distribution of amino acids in the transmembrane segments of human type I single span membrane proteins, J. Mol. Biol. 229, 602-608.
-
(1993)
J. Mol. Biol
, vol.229
, pp. 602-608
-
-
Landolt-Marticorena, C.1
Williams, K.A.2
Deber, C.M.3
Reithmeier, R.A.F.4
-
14
-
-
0025249842
-
Membrane protein folding and oligomerization: The two-stage model
-
Popot, J. L., and Engelman, D. M. (1990) Membrane protein folding and oligomerization: the two-stage model, Biochemistry 29, 4031-4037.
-
(1990)
Biochemistry
, vol.29
, pp. 4031-4037
-
-
Popot, J.L.1
Engelman, D.M.2
-
15
-
-
0033790343
-
Helical membrane protein folding, stability, and evolution
-
Popot, J.-L., and Engelman, D. M. (2000) Helical membrane protein folding, stability, and evolution, Annu. Rev. Biochem. 69, 881-922.
-
(2000)
Annu. Rev. Biochem
, vol.69
, pp. 881-922
-
-
Popot, J.-L.1
Engelman, D.M.2
-
16
-
-
2442442435
-
Interfacial folding and membrane insertion of a designed helical peptide
-
Ladokhin, A. S., and White, S. H. (2004) Interfacial folding and membrane insertion of a designed helical peptide, Biochemistry 43, 5782-5791.
-
(2004)
Biochemistry
, vol.43
, pp. 5782-5791
-
-
Ladokhin, A.S.1
White, S.H.2
-
17
-
-
0041317291
-
The effect of interactions involving ionizable residues flanking membrane-inserted hydrophobic helices upon helix-helix interaction
-
Lew, S., Caputo, G. A., and London, E. (2003) The effect of interactions involving ionizable residues flanking membrane-inserted hydrophobic helices upon helix-helix interaction, Biochemistry 42, 10833-10842.
-
(2003)
Biochemistry
, vol.42
, pp. 10833-10842
-
-
Lew, S.1
Caputo, G.A.2
London, E.3
-
18
-
-
0034681908
-
Designing transmembrane α-helices that insert spontaneously
-
Wimley, W. C., and White, S. H. (2000) Designing transmembrane α-helices that insert spontaneously, Biochemistry 39, 4432-4442.
-
(2000)
Biochemistry
, vol.39
, pp. 4432-4442
-
-
Wimley, W.C.1
White, S.H.2
-
19
-
-
1542344441
-
Polar residue tagging of transmembrane peptides
-
Melnyk, R. A., Partridge, A. W., Yip, J., Wu, Y., Goto, N. K., and Deber, C. M. (2003) Polar residue tagging of transmembrane peptides, Biopolymers 71, 675-685.
-
(2003)
Biopolymers
, vol.71
, pp. 675-685
-
-
Melnyk, R.A.1
Partridge, A.W.2
Yip, J.3
Wu, Y.4
Goto, N.K.5
Deber, C.M.6
-
20
-
-
34848885103
-
A monomeric membrane peptide that lives in three worlds: In solution, attached to, and inserted across lipid bilayers
-
Reshetnyak, Y. K., Segala, M., Andreev, O. A., and Engelman, D. M. (2007) A monomeric membrane peptide that lives in three worlds: in solution, attached to, and inserted across lipid bilayers, Biophys. J. 93, 2363-2372.
-
(2007)
Biophys. J
, vol.93
, pp. 2363-2372
-
-
Reshetnyak, Y.K.1
Segala, M.2
Andreev, O.A.3
Engelman, D.M.4
-
21
-
-
33646272211
-
Translocation of molecules into cells by pH-dependent insertion of a transmembrane helix
-
Reshetnyak, Y. K., Andreev, O. A., Lehnert, U., and Engelman, D. M. (2006) Translocation of molecules into cells by pH-dependent insertion of a transmembrane helix, Proc. Natl. Acad. Sci. U.S.A. 103, 6460-6465.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A
, vol.103
, pp. 6460-6465
-
-
Reshetnyak, Y.K.1
Andreev, O.A.2
Lehnert, U.3
Engelman, D.M.4
-
22
-
-
0030723767
-
Spontaneous, pH-dependent membrane insertion of a transbilayer α-helix
-
Hunt, J. F., Rath, P., Rothschild, K. J., and Engelman, D. M. (1997) Spontaneous, pH-dependent membrane insertion of a transbilayer α-helix, Biochemistry 36, 15177-15192.
-
(1997)
Biochemistry
, vol.36
, pp. 15177-15192
-
-
Hunt, J.F.1
Rath, P.2
Rothschild, K.J.3
Engelman, D.M.4
-
23
-
-
3042774119
-
Position and ionization state of Asp in the core of membrane-inserted α helices control both the equilibrium between transmembrane and nontransmembrane helix topography and transmembrane Helix positioning
-
Caputo, G. A., and London, E. (2004) Position and ionization state of Asp in the core of membrane-inserted α helices control both the equilibrium between transmembrane and nontransmembrane helix topography and transmembrane Helix positioning, Biochemistry 43, 8794-8806.
-
(2004)
Biochemistry
, vol.43
, pp. 8794-8806
-
-
Caputo, G.A.1
London, E.2
-
24
-
-
13544273837
-
Topography of diphtheria toxin A chain inserted into lipid vesicles
-
Hayashibara, M., and London, E. (2005) Topography of diphtheria toxin A chain inserted into lipid vesicles, Biochemistry 44, 2183-2196.
-
(2005)
Biochemistry
, vol.44
, pp. 2183-2196
-
-
Hayashibara, M.1
London, E.2
-
25
-
-
37349002470
-
Zwitterionic phospholipids and sterols modulate antimicrobial peptide-induced membrane destabilization
-
Mason, A. J., Marquette, A., and Bechinger, B. (2007) Zwitterionic phospholipids and sterols modulate antimicrobial peptide-induced membrane destabilization, Biophys. J. 93, 4289-4299.
-
(2007)
Biophys. J
, vol.93
, pp. 4289-4299
-
-
Mason, A.J.1
Marquette, A.2
Bechinger, B.3
-
26
-
-
33645780418
-
The antimicrobial peptide polyphemusin localizes to the cytoplasm of Escherichia coli following treatment
-
Powers, J.-P. S., Martin, M. M., Goosney, D. L., and Hancock, R. E. W. (2006) The antimicrobial peptide polyphemusin localizes to the cytoplasm of Escherichia coli following treatment, Antimicrob. Agents Chemother. 50, 1522-1524.
-
(2006)
Antimicrob. Agents Chemother
, vol.50
, pp. 1522-1524
-
-
Powers, J.-P.S.1
Martin, M.M.2
Goosney, D.L.3
Hancock, R.E.W.4
-
27
-
-
36849087359
-
Role of helix nucleation in the kinetics of binding of mastoparan X to phospholipid bilayers
-
Tang, J., Signarvic, R. S., DeGrado, W. F., and Gai, F. (2007) Role of helix nucleation in the kinetics of binding of mastoparan X to phospholipid bilayers, Biochemistry 46, 13856-13863.
-
(2007)
Biochemistry
, vol.46
, pp. 13856-13863
-
-
Tang, J.1
Signarvic, R.S.2
DeGrado, W.F.3
Gai, F.4
-
28
-
-
44049094436
-
Energetics and partition of two cecropin-melittin hybrid peptides to model membranes of different composition
-
Bastos, M., Bai, G., Gomes, P., Andreu, D., Goormaghtigh, E., and Prieto, M. (2008) Energetics and partition of two cecropin-melittin hybrid peptides to model membranes of different composition, Biophys. J. 94, 2128-2141.
-
(2008)
Biophys. J
, vol.94
, pp. 2128-2141
-
-
Bastos, M.1
Bai, G.2
Gomes, P.3
Andreu, D.4
Goormaghtigh, E.5
Prieto, M.6
-
29
-
-
0029775069
-
An antimicrobial peptide, magainin 2, induced rapid flip-flop of phospholipids coupled with pore formation and peptide translocation
-
Matsuzaki, K., Murase, O., Fujii, N., and Miyajima, K. (1996) An antimicrobial peptide, magainin 2, induced rapid flip-flop of phospholipids coupled with pore formation and peptide translocation, Biochemistry 35, 11361-11368.
-
(1996)
Biochemistry
, vol.35
, pp. 11361-11368
-
-
Matsuzaki, K.1
Murase, O.2
Fujii, N.3
Miyajima, K.4
-
30
-
-
0032539980
-
Magainin 2 amide interaction with lipid membranes: Calorimetric detection of peptide binding and pore formation
-
Wenk, M. R., and Seelig, J. (1998) Magainin 2 amide interaction with lipid membranes: calorimetric detection of peptide binding and pore formation, Biochemistry 37, 3909-3916.
-
(1998)
Biochemistry
, vol.37
, pp. 3909-3916
-
-
Wenk, M.R.1
Seelig, J.2
-
31
-
-
0034681140
-
Membrane binding and pore formation of the antibacterial peptide PGLa: Thermodynamic and mechanistic aspects
-
Wieprecht, T., Apostolov, O., Beyermann, M., and Seelig, J. (2000) Membrane binding and pore formation of the antibacterial peptide PGLa: thermodynamic and mechanistic aspects, Biochemistry 39, 442-452.
-
(2000)
Biochemistry
, vol.39
, pp. 442-452
-
-
Wieprecht, T.1
Apostolov, O.2
Beyermann, M.3
Seelig, J.4
-
32
-
-
0033935281
-
Binding of the antibacterial peptide magainin 2 amide to small and large unilamellar vesicles
-
Wieprecht, T., Apostolov, O., and Seelig, J. (2000) Binding of the antibacterial peptide magainin 2 amide to small and large unilamellar vesicles, Biophys. Chem. 85, 187-198.
-
(2000)
Biophys. Chem
, vol.85
, pp. 187-198
-
-
Wieprecht, T.1
Apostolov, O.2
Seelig, J.3
-
33
-
-
14644417184
-
Evaluation of the membrane-binding properties of the proximal region of the angiotensin II receptor (AT1A) carboxyl terminus by surface plasmon resonance
-
Kamimori, H., Unabia, S., Thomas, W. G., and Aguilar, M.-I. (2005) Evaluation of the membrane-binding properties of the proximal region of the angiotensin II receptor (AT1A) carboxyl terminus by surface plasmon resonance, Anal. Sci. 21, 171-174.
-
(2005)
Anal. Sci
, vol.21
, pp. 171-174
-
-
Kamimori, H.1
Unabia, S.2
Thomas, W.G.3
Aguilar, M.-I.4
-
34
-
-
22244489401
-
pH-dependent antifungal lipopeptides and their plausible mode of action
-
Makovitzki, A., and Shai, Y. (2005) pH-dependent antifungal lipopeptides and their plausible mode of action, Biochemistry 44, 9775-9784.
-
(2005)
Biochemistry
, vol.44
, pp. 9775-9784
-
-
Makovitzki, A.1
Shai, Y.2
-
35
-
-
18444391469
-
Lipid membrane-binding properties of tryptophan analogues of linear amphipathic β-sheet cationic antimicrobial peptides using surface plasmon resonance
-
Kamimori, H., Blazyk, J., and Aguilar, M.-I. (2005) Lipid membrane-binding properties of tryptophan analogues of linear amphipathic β-sheet cationic antimicrobial peptides using surface plasmon resonance, Biol. Pharm. Bull. 28, 148-150.
-
(2005)
Biol. Pharm. Bull
, vol.28
, pp. 148-150
-
-
Kamimori, H.1
Blazyk, J.2
Aguilar, M.-I.3
-
36
-
-
0037326012
-
Surface plasmon resonance spectroscopy in the study of membrane-mediated cell signalling
-
Mozsolits, H., Thomas, W. G., and Aguilar, M.-I. (2003) Surface plasmon resonance spectroscopy in the study of membrane-mediated cell signalling, J. Pept. Sci. 9, 77-89.
-
(2003)
J. Pept. Sci
, vol.9
, pp. 77-89
-
-
Mozsolits, H.1
Thomas, W.G.2
Aguilar, M.-I.3
-
37
-
-
33845995843
-
Activation of platelet αIIbβ3 by an exogenous peptide corresponding to the transmembrane domain of αIIb
-
Yin, H., Litvinov, R. I., Vilaire, G., Zhu, H., Li, W., Caputo, G. A., Moore, D. T., Lear, J. D., Weisel, J. W., DeGrado, W. F., and Bennett, J. S. (2006) Activation of platelet αIIbβ3 by an exogenous peptide corresponding to the transmembrane domain of αIIb, J. Biol. Chem. 281, 36732-36741.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 36732-36741
-
-
Yin, H.1
Litvinov, R.I.2
Vilaire, G.3
Zhu, H.4
Li, W.5
Caputo, G.A.6
Moore, D.T.7
Lear, J.D.8
Weisel, J.W.9
DeGrado, W.F.10
Bennett, J.S.11
-
38
-
-
36248978178
-
The control of transmembrane helix transverse position in membranes by hydrophilic residues
-
Krishnakumar, S. S., and London, E. (2007) The control of transmembrane helix transverse position in membranes by hydrophilic residues, J. Mol. Biol. 374, 1251-1269.
-
(2007)
J. Mol. Biol
, vol.374
, pp. 1251-1269
-
-
Krishnakumar, S.S.1
London, E.2
-
39
-
-
13444262028
-
Recognition of transmembrane helices by the endoplasmic reticulum translocon
-
Hessa, T., Kim, H., Bihlmaier, K., Lundin, C., Boekel, J., Andersson, H., Nilsson, I., White, S. H., and von Heijne, G. (2005) Recognition of transmembrane helices by the endoplasmic reticulum translocon, Nature 433, 377-381.
-
(2005)
Nature
, vol.433
, pp. 377-381
-
-
Hessa, T.1
Kim, H.2
Bihlmaier, K.3
Lundin, C.4
Boekel, J.5
Andersson, H.6
Nilsson, I.7
White, S.H.8
von Heijne, G.9
-
40
-
-
33750498869
-
Asn- and Asp-mediated interactions between transmembrane helices during translocon-mediated membrane protein assembly,
-
7
-
Meindl-Beinker, N. M., Lundin, C., Nilsson, I., White, S. H., and von Heijne, G. (2006) Asn- and Asp-mediated interactions between transmembrane helices during translocon-mediated membrane protein assembly, EMBO Rep. 7, 1111-1116.
-
(2006)
EMBO Rep
, pp. 1111-1116
-
-
Meindl-Beinker, N.M.1
Lundin, C.2
Nilsson, I.3
White, S.H.4
von Heijne, G.5
-
41
-
-
33746529820
-
An amino acid "transmembrane tendency" scale that approaches the theoretical limit to accuracy for prediction of transmembrane helices: Relationship to biological hydrophobicity
-
Zhao, G., and London, E. (2006) An amino acid "transmembrane tendency" scale that approaches the theoretical limit to accuracy for prediction of transmembrane helices: relationship to biological hydrophobicity, Protein Sci. 15, 1987-2001.
-
(2006)
Protein Sci
, vol.15
, pp. 1987-2001
-
-
Zhao, G.1
London, E.2
-
42
-
-
0033983453
-
Asparagine-mediated self-association of a model transmembrane helix
-
Choma, C., Gratkowski, H., Lear, J. D., and DeGrado, W. F. (2000) Asparagine-mediated self-association of a model transmembrane helix, Nat. Struct. Mol. Biol. 7, 161-166.
-
(2000)
Nat. Struct. Mol. Biol
, vol.7
, pp. 161-166
-
-
Choma, C.1
Gratkowski, H.2
Lear, J.D.3
DeGrado, W.F.4
-
43
-
-
0007949690
-
Interhelical hydrogen bonding drives strong interactions in membrane proteins
-
Xiao Zhou, F., Cocco, M. J., Russ, W. P., Brunger, A. T., and Engelman, D. M. (2000) Interhelical hydrogen bonding drives strong interactions in membrane proteins, Nat. Struct. Mol. Biol. 7, 154-160.
-
(2000)
Nat. Struct. Mol. Biol
, vol.7
, pp. 154-160
-
-
Xiao Zhou, F.1
Cocco, M.J.2
Russ, W.P.3
Brunger, A.T.4
Engelman, D.M.5
-
44
-
-
34147130190
-
Computational design of peptides that target transmembrane helices
-
Yin, H., Slusky, J. S., Berger, B. W., Walters, R. S., Vilaire, G., Litvinov, R. I., Lear, J. D., Caputo, G. A., Bennett, J. S., and DeGrado, W. F. (2007) Computational design of peptides that target transmembrane helices, Science 315, 1817-1822.
-
(2007)
Science
, vol.315
, pp. 1817-1822
-
-
Yin, H.1
Slusky, J.S.2
Berger, B.W.3
Walters, R.S.4
Vilaire, G.5
Litvinov, R.I.6
Lear, J.D.7
Caputo, G.A.8
Bennett, J.S.9
DeGrado, W.F.10
-
45
-
-
34547238759
-
Vertical and directional insertion of helical peptide into lipid bilayer membrane
-
Nakatani, K., Morita, T., and Kimura, S. (2007) Vertical and directional insertion of helical peptide into lipid bilayer membrane, Langmuir 23, 7170-7177.
-
(2007)
Langmuir
, vol.23
, pp. 7170-7177
-
-
Nakatani, K.1
Morita, T.2
Kimura, S.3
-
46
-
-
0034635171
-
Determining the membrane topology of peptides by fluorescence quenching
-
Wimley, W. C., and White, S. H. (2000) Determining the membrane topology of peptides by fluorescence quenching, Biochemistry 39, 161-170.
-
(2000)
Biochemistry
, vol.39
, pp. 161-170
-
-
Wimley, W.C.1
White, S.H.2
-
47
-
-
0034459184
-
Attenuated total reflection IR spectroscopy as a tool to investigate the structure, orientation and tertiary structure changes in peptides and membrane proteins
-
Vigano, C., Manciu, L., Buyse, F., Goormaghtigh, E., and Ruysschaert, J. M. (2000) Attenuated total reflection IR spectroscopy as a tool to investigate the structure, orientation and tertiary structure changes in peptides and membrane proteins, Biopolymers 55, 373-380.
-
(2000)
Biopolymers
, vol.55
, pp. 373-380
-
-
Vigano, C.1
Manciu, L.2
Buyse, F.3
Goormaghtigh, E.4
Ruysschaert, J.M.5
-
48
-
-
2642642114
-
Secondary structure analysis of individual transmembrane segments of the nicotinic acetylcholine receptor by circular dichroism and Fourier transform infrared spectroscopy
-
Corbin, J., Methot, N., Wang, H. H., Baenziger, J. E., and Blanton, M. P. (1998) Secondary structure analysis of individual transmembrane segments of the nicotinic acetylcholine receptor by circular dichroism and Fourier transform infrared spectroscopy, J. Biol. Chem. 273, 771-777.
-
(1998)
J. Biol. Chem
, vol.273
, pp. 771-777
-
-
Corbin, J.1
Methot, N.2
Wang, H.H.3
Baenziger, J.E.4
Blanton, M.P.5
-
49
-
-
0034859096
-
Barrel-stave model or toroidal model? A case study on melittin pores
-
Yang, L., Harroun, T. A., Weiss, T. M., Ding, L., and Huang, H. W. (2001) Barrel-stave model or toroidal model? A case study on melittin pores, Biophys. J. 81, 1475-1485.
-
(2001)
Biophys. J
, vol.81
, pp. 1475-1485
-
-
Yang, L.1
Harroun, T.A.2
Weiss, T.M.3
Ding, L.4
Huang, H.W.5
-
50
-
-
33244472850
-
Directed assembly of surface-supported bilayers with transmembrane helices
-
Merzlyakov, M., Li, E., and Hristova, K. (2006) Directed assembly of surface-supported bilayers with transmembrane helices, Langmuir 22, 1247-1253.
-
(2006)
Langmuir
, vol.22
, pp. 1247-1253
-
-
Merzlyakov, M.1
Li, E.2
Hristova, K.3
-
51
-
-
43649098591
-
Structure of the alamethicin pore reconstructed by x-ray diffraction analysis
-
Qian, S., Wang, W., Yang, L., and Huang, H. W. (2008) Structure of the alamethicin pore reconstructed by x-ray diffraction analysis, Biophys. J. 94, 3512-3522.
-
(2008)
Biophys. J
, vol.94
, pp. 3512-3522
-
-
Qian, S.1
Wang, W.2
Yang, L.3
Huang, H.W.4
-
52
-
-
12244255728
-
Hydrophobic mismatch between helices and lipid bilayers
-
Weiss, T. M., van der Wel, P. C. A., Killian, J. A., Koeppe, R. E., II, and Huang, H. W. (2003) Hydrophobic mismatch between helices and lipid bilayers, Biophys. J. 84, 379-385.
-
(2003)
Biophys. J
, vol.84
, pp. 379-385
-
-
Weiss, T.M.1
van der Wel, P.C.A.2
Killian, J.A.3
Koeppe II, R.E.4
Huang, H.W.5
-
53
-
-
0037465698
-
Using a novel dual fluorescence quenching assay for measurement of tryptophan depth within lipid bilayers to determine hydrophobic α-helix locations within membranes
-
Caputo, G. A., and London, E. (2003) Using a novel dual fluorescence quenching assay for measurement of tryptophan depth within lipid bilayers to determine hydrophobic α-helix locations within membranes, Biochemistry 42, 3265-3274.
-
(2003)
Biochemistry
, vol.42
, pp. 3265-3274
-
-
Caputo, G.A.1
London, E.2
-
54
-
-
33947241230
-
Analytical ultracentrifugation studies of the influenza M2 homotetramerization equilibrium in detergent solutions
-
Wandrey, C, and Cölfen, H, Eds, pp, Springer, Berlin/Heidelberg
-
Stouffer, A., DeGrado, W., and Lear, J. (2006) Analytical ultracentrifugation studies of the influenza M2 homotetramerization equilibrium in detergent solutions, in Analytical Ultracentrifugation VIII, (Wandrey, C., and Cölfen, H., Eds.), pp 108-115, Springer, Berlin/Heidelberg.
-
(2006)
Analytical Ultracentrifugation VIII
, pp. 108-115
-
-
Stouffer, A.1
DeGrado, W.2
Lear, J.3
-
55
-
-
33646005188
-
Invariant chain transmembrane domain trimerization: A step in MHC class II assembly
-
Dixon, A. M., Stanley, B. J., Matthews, E. E., Dawson, J. P., and Engelman, D. M. (2006) Invariant chain transmembrane domain trimerization: a step in MHC class II assembly, Biochemistry 45, 5228-5234.
-
(2006)
Biochemistry
, vol.45
, pp. 5228-5234
-
-
Dixon, A.M.1
Stanley, B.J.2
Matthews, E.E.3
Dawson, J.P.4
Engelman, D.M.5
-
56
-
-
33846390316
-
Dimerization of the erythropoietin receptor transmembrane domain in micelles
-
Ebie, A. Z., and Fleming, K. G. (2007) Dimerization of the erythropoietin receptor transmembrane domain in micelles, J. Mol. Biol. 366, 517-524.
-
(2007)
J. Mol. Biol
, vol.366
, pp. 517-524
-
-
Ebie, A.Z.1
Fleming, K.G.2
-
57
-
-
33744807250
-
Characterization of a membrane protein folding motif, the Ser zipper, using designed peptides
-
North, B., Cristian, L., Fu Stowell, X., Lear, J. D., Saven, J. G., and DeGrado, W. F. (2006) Characterization of a membrane protein folding motif, the Ser zipper, using designed peptides, J. Mol. Biol. 359, 930-939.
-
(2006)
J. Mol. Biol
, vol.359
, pp. 930-939
-
-
North, B.1
Cristian, L.2
Fu Stowell, X.3
Lear, J.D.4
Saven, J.G.5
DeGrado, W.F.6
-
58
-
-
14144251553
-
Sequence determinants of a transmembrane proton channel: An inverse relationship between stability and function
-
Stouffer, A. L., Nanda, V., Lear, J. D., and DeGrado, W. F. (2005) Sequence determinants of a transmembrane proton channel: an inverse relationship between stability and function, J. Mol. Biol. 347, 169-179.
-
(2005)
J. Mol. Biol
, vol.347
, pp. 169-179
-
-
Stouffer, A.L.1
Nanda, V.2
Lear, J.D.3
DeGrado, W.F.4
-
60
-
-
11844249905
-
Sodium dodecyl sulfate-polyacrylamide gel electrophoresis and forster resonance energy transfer suggest weak interactions between fibroblast growth factor receptor 3 (FGFR3) transmembrane domains in the absence of extracellular domains and ligands
-
Li, E., You, M., and Hristova, K. (2005) Sodium dodecyl sulfate-polyacrylamide gel electrophoresis and forster resonance energy transfer suggest weak interactions between fibroblast growth factor receptor 3 (FGFR3) transmembrane domains in the absence of extracellular domains and ligands, Biochemistry 44, 352-360.
-
(2005)
Biochemistry
, vol.44
, pp. 352-360
-
-
Li, E.1
You, M.2
Hristova, K.3
-
61
-
-
13844284976
-
Association of a model transmembrane peptide containing gly in a heptad sequence motif
-
Lear, J. D., Stouffer, A. L., Gratkowski, H., Nanda, V., and DeGrado, W. F. (2004) Association of a model transmembrane peptide containing gly in a heptad sequence motif, Biophys. J. 87, 3421-3429.
-
(2004)
Biophys. J
, vol.87
, pp. 3421-3429
-
-
Lear, J.D.1
Stouffer, A.L.2
Gratkowski, H.3
Nanda, V.4
DeGrado, W.F.5
-
62
-
-
0032988826
-
A fluorescence energy transfer method for analyzing protein oligomeric structure: Application to phospholamban
-
Li, M., Reddy, L. G., Bennett, R., Silva, N. D., Jr., Jones, L. R., and Thomas, D. D. (1999) A fluorescence energy transfer method for analyzing protein oligomeric structure: application to phospholamban, Biophys. J. 76, 2587-2599.
-
(1999)
Biophys. J
, vol.76
, pp. 2587-2599
-
-
Li, M.1
Reddy, L.G.2
Bennett, R.3
Silva Jr., N.D.4
Jones, L.R.5
Thomas, D.D.6
-
63
-
-
0033522486
-
Control of the transmembrane orientation and interhelical interactions within membranes by hydrophobic helix length
-
Ren, J., Lew, S., Wang, J., and London, E. (1999) Control of the transmembrane orientation and interhelical interactions within membranes by hydrophobic helix length, Biochemistry 38, 5905-5912.
-
(1999)
Biochemistry
, vol.38
, pp. 5905-5912
-
-
Ren, J.1
Lew, S.2
Wang, J.3
London, E.4
-
64
-
-
0029117442
-
Theory and application of fluorescence homotransfer to melittin oligomerization
-
Runnels, L. W., and Scarlata, S. F. (1995) Theory and application of fluorescence homotransfer to melittin oligomerization, Biophys. J. 69, 1569-1583.
-
(1995)
Biophys. J
, vol.69
, pp. 1569-1583
-
-
Runnels, L.W.1
Scarlata, S.F.2
-
65
-
-
0036785582
-
A structure for the yeast prohibitin complex: Structure prediction and evidence from chemical crosslinking and mass spectrometry
-
Back, J. W., Sanz, M. A., de Jong, L., de Koning, L. J., Nijtmans, L. G. J., de Koster, C. G., Grivell, L. A., van der Spek, H., and Muijsers, A. O. (2002) A structure for the yeast prohibitin complex: structure prediction and evidence from chemical crosslinking and mass spectrometry, Protein Sci. 11, 2471-2478.
-
(2002)
Protein Sci
, vol.11
, pp. 2471-2478
-
-
Back, J.W.1
Sanz, M.A.2
de Jong, L.3
de Koning, L.J.4
Nijtmans, L.G.J.5
de Koster, C.G.6
Grivell, L.A.7
van der Spek, H.8
Muijsers, A.O.9
-
66
-
-
34250792303
-
Use of site-directed cysteine and disulfide chemistry to probe protein structure and dynamics: Applications to soluble and transmembrane receptors of bacterial chemotaxis
-
Simon, M. I, Crane, B. R, and Crane, A, Eds, pp, Academic Press, New York
-
Bass, R. B., Butler, S. L., Chervitz, S. A., Gloor, S. L., and Falke, J. J. (2007) Use of site-directed cysteine and disulfide chemistry to probe protein structure and dynamics: applications to soluble and transmembrane receptors of bacterial chemotaxis, in Methods in Enzymology (Simon, M. I., Crane, B. R., and Crane, A., Eds.), pp 25-51, Academic Press, New York.
-
(2007)
Methods in Enzymology
, pp. 25-51
-
-
Bass, R.B.1
Butler, S.L.2
Chervitz, S.A.3
Gloor, S.L.4
Falke, J.J.5
-
67
-
-
33846817047
-
The Tim9p/10p and Tim8p/13p complexes bind to specific sites on Tim23p during mitochondrial protein import
-
Davis, A. J., Alder, N. N., Jensen, R. E., and Johnson, A. E. (2007) The Tim9p/10p and Tim8p/13p complexes bind to specific sites on Tim23p during mitochondrial protein import, Mol. Biol. Cell 18, 475-486.
-
(2007)
Mol. Biol. Cell
, vol.18
, pp. 475-486
-
-
Davis, A.J.1
Alder, N.N.2
Jensen, R.E.3
Johnson, A.E.4
-
68
-
-
33846452163
-
TOAC spin labels in the backbone of alamethicin: EPR studies in lipid membranes
-
Marsh, D., Jost, M., Peggion, C., and Toniolo, C. (2007) TOAC spin labels in the backbone of alamethicin: EPR studies in lipid membranes, Biophys. J. 92, 473-481.
-
(2007)
Biophys. J
, vol.92
, pp. 473-481
-
-
Marsh, D.1
Jost, M.2
Peggion, C.3
Toniolo, C.4
-
69
-
-
41149088216
-
Incorporation of transmembrane peptides from the vacuolar H+-ATPase in phospholipid membranes: Spin-label electron paramagnetic resonance and polarized infrared spectroscopy
-
Kóta, Z., Páli, T., Dixon, N., Kee, T. P., Harrison, M. A., Findlay, J. B. C., Finbow, M. E., and Marsh, D. (2008) Incorporation of transmembrane peptides from the vacuolar H+-ATPase in phospholipid membranes: spin-label electron paramagnetic resonance and polarized infrared spectroscopy, Biochemistry 47, 3937-3949.
-
(2008)
Biochemistry
, vol.47
, pp. 3937-3949
-
-
Kóta, Z.1
Páli, T.2
Dixon, N.3
Kee, T.P.4
Harrison, M.A.5
Findlay, J.B.C.6
Finbow, M.E.7
Marsh, D.8
-
70
-
-
33646902110
-
Folding and stability of α-helical integral membrane proteins
-
MacKenzie, K. R. (2006) Folding and stability of α-helical integral membrane proteins, Chem. Rev. 106, 1931-1977.
-
(2006)
Chem. Rev
, vol.106
, pp. 1931-1977
-
-
MacKenzie, K.R.1
-
71
-
-
0033521097
-
Inhibition of G-protein-coupled receptor function by disruption of transmembrane domain interactions
-
Tarasova, N. I., Rice, W. G., and Michejda, C. J. (1999) Inhibition of G-protein-coupled receptor function by disruption of transmembrane domain interactions, J. Biol. Chem. 274, 34911-34915.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 34911-34915
-
-
Tarasova, N.I.1
Rice, W.G.2
Michejda, C.J.3
-
72
-
-
13444291852
-
A push-pull mechanism for regulating integrin function
-
Li, W., Metcalf, D. G., Gorelik, R., Li, R., Mitra, N., Nanda, V., Law, P. B., Lear, J. D., DeGrado, W. F., and Bennett, J. S. (2005) A push-pull mechanism for regulating integrin function, Proc. Natl. Acad. Sci. U.S.A. 102, 1424-1429.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A
, vol.102
, pp. 1424-1429
-
-
Li, W.1
Metcalf, D.G.2
Gorelik, R.3
Li, R.4
Mitra, N.5
Nanda, V.6
Law, P.B.7
Lear, J.D.8
DeGrado, W.F.9
Bennett, J.S.10
-
73
-
-
0024337144
-
Studies of the HER-2/neu proto-oncogene in human breast and ovarian cancer
-
Slamon, D. J., Godolphin, W., Jones, L. A., Holt, J. A., Wong, S. G., Keith, D. E., Levin, W. J., Stuart, S. G., Udove, J., and Ullrich, A., et al. (1989) Studies of the HER-2/neu proto-oncogene in human breast and ovarian cancer, Science 244, 707-712.
-
(1989)
Science
, vol.244
, pp. 707-712
-
-
Slamon, D.J.1
Godolphin, W.2
Jones, L.A.3
Holt, J.A.4
Wong, S.G.5
Keith, D.E.6
Levin, W.J.7
Stuart, S.G.8
Udove, J.9
Ullrich, A.10
-
74
-
-
0010482231
-
Molecular cloning of the neu gene: Absence of gross structural alteration in oncogenic alleles
-
Hung, M.-C., Schechter, A. L., Chevray, P.-Y. M., Stern, D. F., and Weinberg, R. A. (1986) Molecular cloning of the neu gene: absence of gross structural alteration in oncogenic alleles, Proc. Natl. Acad. Sci. U.S.A. 83, 261-264.
-
(1986)
Proc. Natl. Acad. Sci. U.S.A
, vol.83
, pp. 261-264
-
-
Hung, M.-C.1
Schechter, A.L.2
Chevray, P.-Y.M.3
Stern, D.F.4
Weinberg, R.A.5
-
75
-
-
0023100261
-
Epidermal growth factor induces rapid, reversible aggregation of the purified epidermal growth factor receptor
-
Yarden, Y., and Schlessinger, J. (1987) Epidermal growth factor induces rapid, reversible aggregation of the purified epidermal growth factor receptor, Biochemistry 26, 1443-1451.
-
(1987)
Biochemistry
, vol.26
, pp. 1443-1451
-
-
Yarden, Y.1
Schlessinger, J.2
-
76
-
-
0027203585
-
Specific short transmembrane sequences can inhibit transformation by the mutant neu growth factor receptor in vitro and in vivo
-
Lofts, F. J., Hurst, H. C., Sternberg, M. J., and Gullick, W. J. (1993) Specific short transmembrane sequences can inhibit transformation by the mutant neu growth factor receptor in vitro and in vivo, Oncogene 8, 2813-2820.
-
(1993)
Oncogene
, vol.8
, pp. 2813-2820
-
-
Lofts, F.J.1
Hurst, H.C.2
Sternberg, M.J.3
Gullick, W.J.4
-
77
-
-
0042931286
-
Sequence motifs, polar interactions and conformational changes in helical membrane proteins
-
Curran, A. R., and Engelman, D. M. (2003) Sequence motifs, polar interactions and conformational changes in helical membrane proteins, Curr. Opin. Struc. Biol. 13, 412-417.
-
(2003)
Curr. Opin. Struc. Biol
, vol.13
, pp. 412-417
-
-
Curran, A.R.1
Engelman, D.M.2
-
78
-
-
0030932407
-
A transmembrane helix dimer: Structure and implications
-
MacKenzie, K. R., Prestegard, J. H., and Engelman, D. M. (1997) A transmembrane helix dimer: structure and implications, Science 276, 131-133.
-
(1997)
Science
, vol.276
, pp. 131-133
-
-
MacKenzie, K.R.1
Prestegard, J.H.2
Engelman, D.M.3
-
79
-
-
0037085373
-
The single transmembrane domains of ErbB receptors self-associate in cell membranes
-
Mendrola, J. M., Berger, M. B., King, M. C., and Lemmon, M. A. (2002) The single transmembrane domains of ErbB receptors self-associate in cell membranes, J. Biol. Chem. 277, 4704-4712.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 4704-4712
-
-
Mendrola, J.M.1
Berger, M.B.2
King, M.C.3
Lemmon, M.A.4
-
80
-
-
0027268645
-
Integrins: Cell adhesives and modulators of cell function
-
Bosman, F. T. (1993) Integrins: cell adhesives and modulators of cell function, Histochem. J. 25, 469-477.
-
(1993)
Histochem. J
, vol.25
, pp. 469-477
-
-
Bosman, F.T.1
-
81
-
-
31044441154
-
Structure and function of the platelet integrin αIIbβ3
-
Bennett, J. S. (2005) Structure and function of the platelet integrin αIIbβ3, J. Clin. Invest. 115, 3363-3369.
-
(2005)
J. Clin. Invest
, vol.115
, pp. 3363-3369
-
-
Bennett, J.S.1
-
82
-
-
0003422388
-
-
5th ed, W. H. Freeman & Co, New York
-
Lodish, H., Berk, A., Matsudaira, P., Kaiser, C. A., Krieger, M., Scott, M. P., Zipursky, L., and Darnell, J. (2003) Molecular Cell Biology, 5th ed., W. H. Freeman & Co., New York.
-
(2003)
Molecular Cell Biology
-
-
Lodish, H.1
Berk, A.2
Matsudaira, P.3
Kaiser, C.A.4
Krieger, M.5
Scott, M.P.6
Zipursky, L.7
Darnell, J.8
-
83
-
-
0037820642
-
A transmembrane segment mimic derived from Escherichia coli diacylglycerol kinase inhibits protein activity
-
Partridge, A. W., Melnyk, R. A., Yang, D., Bowie, J. U., and Deber, C. M. (2003) A transmembrane segment mimic derived from Escherichia coli diacylglycerol kinase inhibits protein activity, J. Biol. Chem. 278, 22056-22060.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 22056-22060
-
-
Partridge, A.W.1
Melnyk, R.A.2
Yang, D.3
Bowie, J.U.4
Deber, C.M.5
-
84
-
-
2942700100
-
Dimerization of the transmembrane domain of integrin αIIb subunit in cell membranes
-
Li, R., Gorelik, R., Nanda, V., Law, P. B., Lear, J. D., DeGrado, W. F., and Bennett, J. S. (2004) Dimerization of the transmembrane domain of integrin αIIb subunit in cell membranes, J. Biol. Chem. 279, 26666-26673.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 26666-26673
-
-
Li, R.1
Gorelik, R.2
Nanda, V.3
Law, P.B.4
Lear, J.D.5
DeGrado, W.F.6
Bennett, J.S.7
-
85
-
-
0035940359
-
Oligomerization of the integrin αIIbβ3: Roles of the transmembrane and cytoplasmic domains
-
Li, R., Babu, C. R., Lear, J. D., Wand, A. J., Bennett, J. S., and DeGrado, W. F. (2001) Oligomerization of the integrin αIIbβ3: roles of the transmembrane and cytoplasmic domains, Proc. Natl. Acad. Sci. U.S.A. 98, 12462-12467.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A
, vol.98
, pp. 12462-12467
-
-
Li, R.1
Babu, C.R.2
Lear, J.D.3
Wand, A.J.4
Bennett, J.S.5
DeGrado, W.F.6
-
86
-
-
16644396938
-
A specific interface between integrin transmembrane helices and affinity for ligand
-
Luo, B.-H., Springer, T. A., and Takagi, J. (2004) A specific interface between integrin transmembrane helices and affinity for ligand, PLoS Biol. 2, 776-786.
-
(2004)
PLoS Biol
, vol.2
, pp. 776-786
-
-
Luo, B.-H.1
Springer, T.A.2
Takagi, J.3
-
87
-
-
0031013825
-
T-cell antigen receptor transmembrane peptides modulate T-cell function and T cell-mediated disease
-
Manolios, N., Collier, S., Taylor, J., Pollard, J., Harrison, L. C., and Bender, V. (1997) T-cell antigen receptor transmembrane peptides modulate T-cell function and T cell-mediated disease, Nat. Med. 3, 84-88.
-
(1997)
Nat. Med
, vol.3
, pp. 84-88
-
-
Manolios, N.1
Collier, S.2
Taylor, J.3
Pollard, J.4
Harrison, L.C.5
Bender, V.6
-
88
-
-
0021271862
-
The interleukin-2 T-cell system: A new cell growth model
-
Cantrell, D. A., and Smith, K. A. (1984) The interleukin-2 T-cell system: a new cell growth model, Science 224, 1312-1316.
-
(1984)
Science
, vol.224
, pp. 1312-1316
-
-
Cantrell, D.A.1
Smith, K.A.2
-
89
-
-
0023907493
-
Interleukin-2: Inception, impact, and implications
-
Smith, K. A. (1988) Interleukin-2: inception, impact, and implications, Science 240, 1169-1176.
-
(1988)
Science
, vol.240
, pp. 1169-1176
-
-
Smith, K.A.1
-
90
-
-
0025314322
-
Transmembrane helical interactions and the assembly of the T cell receptor complex
-
Manolios, N., Bonifacino, J. S., and Klausner, R. D. (1990) Transmembrane helical interactions and the assembly of the T cell receptor complex, Science 249, 274-277.
-
(1990)
Science
, vol.249
, pp. 274-277
-
-
Manolios, N.1
Bonifacino, J.S.2
Klausner, R.D.3
-
91
-
-
11144245007
-
T Cell antigen receptor peptide-lipid membrane interactions using surface plasmon resonance
-
Bender, V., Ali, M., Amon, M., Diefenbach, E., and Manolios, N. (2004) T Cell antigen receptor peptide-lipid membrane interactions using surface plasmon resonance, J. Biol. Chem. 279, 54002-54007.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 54002-54007
-
-
Bender, V.1
Ali, M.2
Amon, M.3
Diefenbach, E.4
Manolios, N.5
-
92
-
-
33747036119
-
Lipidation and glycosylation of a T cell antigen receptor (TCR) transmembrane hydrophobic peptide dramatically enhances in vitro and in vivo function
-
Amon, M. A., Ali, M., Bender, V., Chan, Y.-N., Toth, I., and Manolios, N. (2006) Lipidation and glycosylation of a T cell antigen receptor (TCR) transmembrane hydrophobic peptide dramatically enhances in vitro and in vivo function, Biochim. Biophys. Acta 1763, 879-888.
-
(2006)
Biochim. Biophys. Acta
, vol.1763
, pp. 879-888
-
-
Amon, M.A.1
Ali, M.2
Bender, V.3
Chan, Y.-N.4
Toth, I.5
Manolios, N.6
-
93
-
-
2142762954
-
Selection and characterization of small random transmembrane proteins that bind and activate the platelet-derived growth factor β receptor
-
Freeman-Cook, L. L., Dixon, A. M., Frank, J. B., Xia, Y., Ely, L., Gerstein, M., Engelman, D. M., and DiMaio, D. (2004) Selection and characterization of small random transmembrane proteins that bind and activate the platelet-derived growth factor β receptor, J. Mol. Biol. 338, 907-920.
-
(2004)
J. Mol. Biol
, vol.338
, pp. 907-920
-
-
Freeman-Cook, L.L.1
Dixon, A.M.2
Frank, J.B.3
Xia, Y.4
Ely, L.5
Gerstein, M.6
Engelman, D.M.7
DiMaio, D.8
-
94
-
-
34547529460
-
Packing contacts can mediate highly specific interactions between artificial transmembrane proteins and the PDGFβ receptor
-
Ptacek, J. B., Edwards, A. P. B., Freeman-Cook, L. L., and DiMaio, D. (2007) Packing contacts can mediate highly specific interactions between artificial transmembrane proteins and the PDGFβ receptor, Proc. Natl. Acad. Sci. U.S.A. 104, 11945-11950.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A
, vol.104
, pp. 11945-11950
-
-
Ptacek, J.B.1
Edwards, A.P.B.2
Freeman-Cook, L.L.3
DiMaio, D.4
-
95
-
-
0031726412
-
Virocrine transformation: The intersection between viral transforming proteins and cellular signal transduction pathways
-
DiMaio, D., Lai, C.-C., and Klein, O. (1998) Virocrine transformation: the intersection between viral transforming proteins and cellular signal transduction pathways, Annu. Rev. Microbiol. 52, 397-421.
-
(1998)
Annu. Rev. Microbiol
, vol.52
, pp. 397-421
-
-
DiMaio, D.1
Lai, C.-C.2
Klein, O.3
-
96
-
-
0343362951
-
Translation of open reading frame E5 of bovine papillomavirus is required for its transforming activity
-
DiMaio, D., Guralski, D., and Schiller, J. T. (1986) Translation of open reading frame E5 of bovine papillomavirus is required for its transforming activity, Proc. Natl. Acad. Sci. U.S.A. 83, 1797-1801.
-
(1986)
Proc. Natl. Acad. Sci. U.S.A
, vol.83
, pp. 1797-1801
-
-
DiMaio, D.1
Guralski, D.2
Schiller, J.T.3
-
97
-
-
27944441344
-
Modulation of cell function by small transmembrane proteins modeled on the bovine papillomavirus E5 protein
-
Freeman-Cook, L. L., and DiMaio, D. (2005) Modulation of cell function by small transmembrane proteins modeled on the bovine papillomavirus E5 protein, Oncogene 24, 7756-7762.
-
(2005)
Oncogene
, vol.24
, pp. 7756-7762
-
-
Freeman-Cook, L.L.1
DiMaio, D.2
-
98
-
-
1042298843
-
Computational design of protein-protein interactions
-
Kortemme, T., and Baker, D. (2004) Computational design of protein-protein interactions, Curr. Opin. Chem. Biol. 8, 91-97.
-
(2004)
Curr. Opin. Chem. Biol
, vol.8
, pp. 91-97
-
-
Kortemme, T.1
Baker, D.2
-
99
-
-
0034641749
-
Native protein sequences are close to optimal for their structures
-
Kuhlman, B., and Baker, D. (2000) Native protein sequences are close to optimal for their structures, Proc. Natl. Acad. Sci. U.S.A. 97, 10383-10388.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A
, vol.97
, pp. 10383-10388
-
-
Kuhlman, B.1
Baker, D.2
-
100
-
-
0038161052
-
Protein-protein docking with simultaneous optimization of rigid-body displacement and sidechain conformations
-
Gray, J. J., Moughon, S., Wang, C., Schueler-Furman, O., Kuhlman, B., Rohl, C. A., and Baker, D. (2003) Protein-protein docking with simultaneous optimization of rigid-body displacement and sidechain conformations, J. Mol. Biol. 331, 281-299.
-
(2003)
J. Mol. Biol
, vol.331
, pp. 281-299
-
-
Gray, J.J.1
Moughon, S.2
Wang, C.3
Schueler-Furman, O.4
Kuhlman, B.5
Rohl, C.A.6
Baker, D.7
-
101
-
-
0037470581
-
An orientationdependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes
-
Kortemme, T., Morozov, A. V., and Baker, D. (2003) An orientationdependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes, J. Mol. Biol. 326, 1239-1259.
-
(2003)
J. Mol. Biol
, vol.326
, pp. 1239-1259
-
-
Kortemme, T.1
Morozov, A.V.2
Baker, D.3
-
102
-
-
0033135638
-
Effective energy function for proteins in solution
-
Lazaridis, T., and Karplus, M. (1999) Effective energy function for proteins in solution, Proteins 35, 133-152.
-
(1999)
Proteins
, vol.35
, pp. 133-152
-
-
Lazaridis, T.1
Karplus, M.2
-
103
-
-
35648943768
-
Toward high-resolution prediction and design of transmembrane helical protein structures
-
Barth, P., Schonbrun, J., and Baker, D. (2007) Toward high-resolution prediction and design of transmembrane helical protein structures, Proc. Natl. Acad. Sci. U.S.A. 104, 15682-15687.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A
, vol.104
, pp. 15682-15687
-
-
Barth, P.1
Schonbrun, J.2
Baker, D.3
|