Alamethicin aggregation in lipid membranes

Journal of Membrane Biology

Volumn 231, Issue 1, 2009, Pages 11-27

  Pan, Jianjun ^a   Tristram Nagle, Stephanie ^a   Nagle, John F ^a  

^a CARNEGIE MELLON UNIVERSITY   (United States)

Author keywords

Aggregation; Alamethicin; Helix bundle; Hydrophobic mismatch; Ion channel; Water pore

Indexed keywords

ALAMETHICIN;

ARTICLE; CALCULATION; HUMAN; LIPID MEMBRANE; MATHEMATICAL ANALYSIS; RADIATION SCATTERING; SIMULATION;

ALAMETHICIN; HYDROPHOBICITY; ION CHANNELS; LIPID BILAYERS; MEMBRANE LIPIDS; MODELS, CHEMICAL; MODELS, MOLECULAR; MOLECULAR DYNAMICS SIMULATION; PHOSPHATIDYLCHOLINES; SCATTERING, RADIATION; X-RAY DIFFRACTION;

EID: 70350031590     PISSN: 00222631     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00232-009-9199-8     Document Type: Article

References (52)

1. Als-Nielsen J, McMorrow D (2001) Elements of modern X-ray physics. Wiley, New York
2. OS Andersen RE Koeppe 2007 Bilayer thickness and membrane protein function: an energetic perspective Annu Rev Biophys Biomol Struct 36 107 130 10.1146/annurev.biophys.36.040306.132643 17263662 (Pubitemid 46998112)
3. M Bak RP Bywater M Hohwy JK Thomsen K Adelhorst HJ Jakobsen OW Sorensen NC Nielsen 2001 Conformation of alamethicin in oriented phospholipid bilayers determined by n-15 solid-state nuclear magnetic resonance Biophys J 81 1684 1698 10.1016/S0006-3495(01)75822-5 11509381
4. G Baumann P Mueller 1974 A molecular model of membrane excitability J Supramol Struct 2 538 557 10.1002/jss.400020504 4461846
5. T Baumgart ST Hess WW Webb 2003 Imaging coexisting fluid domains in biomembrane models coupling curvature and line tension Nature 425 821 824 10.1038/nature02013 14574408 (Pubitemid 37351463)
6. MF Brown 1994 Modulation of rhodopsin function by properties of the membrane bilayer Chem Phys Lipids 73 159 180 10.1016/0009-3084(94)90180-5 8001180 (Pubitemid 24299194)
7. DS Cafiso 1994 Alamethicin: a peptide model for voltage gating and protein-membrane interactions Annu Rev Biophys Biomol Struct 23 141 165 10.1146/annurev.bb.23.060194.001041 7522664
8. RS Cantor 1997 Lateral pressures in cell membranes: a mechanism for modulation of protein function J Phys Chem B Condens Matter Mater Surf Interfaces Biophys 101 1723 1725
9. D Constantin G Brotons A Jarre C Li T Salditt 2007 Interaction of alamethicin pores in dmpc bilayers Biophys J 92 3978 3987 10.1529/biophysj.106. 101204 17369412 (Pubitemid 46910584)
10. RO Fox FM Richards 1982 A voltage-gated ion channel model inferred from the crystal-structure of alamethicin at 1.5-a resolution Nature 300 325 330 10.1038/300325a0 6292726 (Pubitemid 13196895)
11. SM Gruner E Shyamsunder 1991 Is the mechanism of general-anesthesia related to lipid-membrane spontaneous curvature Ann N Y Acad Sci 625 685 697 10.1111/j.1749-6632.1991.tb33902.x 2058916
12. Guinier A (1994) X-ray diffraction in crystals, imperfect crystals, and amorphous bodies. Dover, New York
13. JE Hall I Vodyanoy TM Balasubramanian GR Marshall 1984 Alamethicin-a rich model for channel behavior Biophys J 45 233 247 10.1016/S0006-3495(84)84151-X 6324906
14. Hansen JP, McDonald IR (1976) Theory of simple liquids. Academic Press, New York
15. K He SJ Ludtke Y Wu HW Huang 1993 X-ray scattering with momentum transfer in the plane of membrane. Application to gramicidin organization Biophys J 64 157 162 10.1016/S0006-3495(93)81350-X 7679294
16. K He SJ Ludtke HW Huang DL Worcester 1995 Antimicrobial peptide pores in membranes detected by neutron in-plane scattering Biochemistry 34 15614 15618 10.1021/bi00048a002 7495788
17. K He SJ Ludtke DL Worcester HW Huang 1996 Neutron scattering in the plane of membranes: structure of alamethicin pores Biophys J 70 2659 2666 10.1016/S0006-3495(96)79835-1 8744303
18. HW Huang 1986 Deformation free energy of bilayer membrane and its effect on gramicidin channel lifetime Biophys J 50 1061 1070 10.1016/S0006-3495(86) 83550-0 2432948
19. JS Hub T Salditt MC Rheinstadter BL de Groot 2007 Short-range order and collective dynamics of dmpc bilayers: a comparison between molecular dynamics simulations, X-ray, and neutron scattering experiments Biophys J 93 3156 3168 10.1529/biophysj.107.104885 17631531 (Pubitemid 350097106)
20. WC Hung MT Lee FY Chen HW Huang 2007 The condensing effect of cholesterol in lipid bilayers Biophys J 92 3960 3967 10.1529/biophysj.106.099234 17369407 (Pubitemid 46910582)
21. MO Jensen OG Mouritsen 2004 Lipids do influence protein function-the hydrophobic matching hypothesis revisited Biochim Biophys Acta 1666 205 226 10.1016/j.bbamem.2004.06.009 15519316 (Pubitemid 39429479)
22. SL Keller SM Bezrukov SM Gruner MW Tate I Vodyanoy VA Parsegian 1993 Probability of alamethicin conductance states varies with nonlamellar tendency of bilayer phospholipids Biophys J 65 23 27 10.1016/S0006-3495(93)81040-3 8369434
23. JA Killian 1998 Hydrophobic mismatch between proteins and lipids in membranes Biochim Biophys Acta 1376 401 415 9805000
24. N Kučerka Y Liu N Chu HI Petrache S Tristram-Nagle JF Nagle 2005 Structure of fully hydrated fluid phase dmpc and dlpc lipid bilayers using X-ray scattering from oriented multilamellar arrays and from unilamellar vesicles Biophys J 88 2626 2637 10.1529/biophysj.104.056606 15665131 (Pubitemid 40976131)
25. N Kučerka S Tristram-Nagle JF Nagle 2005 Structure of fully hydrated fluid phase lipid bilayers with monounsaturated chains J Membr Biol 208 193 202 10.1007/s00232-005-7006-8 16604469
26. MT Lee WC Hung FY Chen HW Huang 2005 Many-body effect of antimicrobial peptides: on the correlation between lipid's spontaneous curvature and pore formation Biophys J 89 4006 4016 10.1529/biophysj.105.068080 16150963 (Pubitemid 41725621)
27. Y Liu JF Nagle 2004 Diffuse scattering provides material parameters and electron density profiles of biomembranes Phys Rev E Stat Nonlin Soft Matter Phys 69 040901 15169001
28. TJ McIntosh SA Simon 2006 Roles of bilayer material properties in function and distribution of membrane proteins Annu Rev Biophys Biomol Struct 35 177 198 10.1146/annurev.biophys.35.040405.102022 16689633 (Pubitemid 43877375)
29. TT Mills GE Toombes S Tristram-Nagle DM Smilgies GW Feigenson JF Nagle 2008 Order parameters and areas in fluid-phase oriented lipid membranes using wide angle X-ray scattering Biophys J 95 669 681 10.1529/biophysj.107.127845 18390624
30. C Münster A Spaar B Bechinger T Salditt 2002 Magainin 2 in phospholipid bilayers: peptide orientation and lipid chain ordering studied by X-ray diffraction Biochim Biophys Acta 1562 37 44 10.1016/S0005-2736(02)00357-7 11988220 (Pubitemid 34461943)
31. C Nielsen M Goulian OS Andersen 1998 Energetics of inclusion-induced bilayer deformations Biophys J 74 1966 1983 10.1016/S0006-3495(98)77904-4 9545056
32. G Pabst S Danner R Podgornik J Katsaras 2007 Entropy-driven softening of fluid lipid bilayers by alamethicin Langmuir 23 11705 11711 10.1021/la701586c 17939689 (Pubitemid 350133018)
33. Pan JJ (2009) Supramolecular organization of the antimicrobial peptide alamethicin in fluid membranes. PhD thesis, Carnegie Mellon University, Pittsburgh
34. J Pan S Tristram-Nagle N Kučerka JF Nagle 2008 Temperature dependence of structure, bending rigidity, and bilayer interactions of dioleoylphosphatidylcholine bilayers Biophys J 94 117 124 10.1529/biophysj.107. 115691 17827241
35. JJ Pan TT Mills S Tristram-Nagle JF Nagle 2008 Cholesterol perturbs lipid bilayers nonuniversally Phys Rev Lett 100 198103 10.1103/PhysRevLett.100.198103 18518492 (Pubitemid 351697483)
36. JJ Pan DP Tieleman JF Nagle N Kučerka S Tristram-Nagle 2009 Alamethicin in lipid bilayers: combined use of X-ray scattering and MD simulations Biochim Biophys Acta 1788 1387 1397 10.1016/j.bbamem.2009.02.013 19248763
37. JJ Pan S Tristram-Nagle JF Nagle 2009 Effect of cholesterol on structural and mechanical properties of membranes depends on lipid chain saturation Phys Rev E 80 021931 10.1103/PhysRevE.80.021931 1-12
38. R Phillips T Ursell P Wiggins P Sens 2009 Emerging roles for lipids in shaping membrane-protein function Nature 459 379 385 10.1038/nature08147 19458714
39. S Qian W Wang L Yang HW Huang 2008 Structure of the alamethicin pore reconstructed by X-ray diffraction analysis Biophys J 94 3512 3522 10.1529/biophysj.107.126474 18199659
40. W Rawicz KC Olbrich T McIntosh D Needham E Evans 2000 Effect of chain length and unsaturation on elasticity of lipid bilayers Biophys J 79 328 339 10.1016/S0006-3495(00)76295-3 10866959
41. Y Rosenfeld 1990 Free-energy model for the inhomogeneous hard-sphere fluid in d-dimensions-structure factors for the hard-disk (d = 2) mixtures in simple explicit form Phys Rev A 42 5978 5989 10.1103/PhysRevA.42.5978 9903877
42. T Salditt CH Li A Spaar 2006 Structure of antimicrobial peptides and lipid membranes probed by interface-sensitive X-ray scattering Biochim Biophys Acta 1758 1483 1498 10.1016/j.bbamem.2006.08.002 16987495 (Pubitemid 44436089)
43. MS Sansom 1991 The biophysics of peptide models of ion channels Prog Biophys Mol Biol 55 139 235 10.1016/0079-6107(91)90004-C 1715999
44. L Thøgersen B Schiøtt T Vosegaard NC Nielsen E Tajkhorshid 2008 Peptide aggregation and pore formation in a lipid bilayer: a combined coarse-grained and all atom molecular dynamics study Biophys J 95 4337 4347 10.1529/biophysj.108.133330 18676652
45. DP Tieleman B Hess MSP Sansom 2002 Analysis and evaluation of channel models: simulations of alamethicin Biophys J 83 2393 2407 10.1016/S0006-3495(02) 73920-9 12414676
46. Tristram-Nagle S (2007) Preparation of oriented, fully hydrated lipid samples for structure determination using X-ray scattering. Humana Press, Totowa
47. S Tristram-Nagle R Zhang RM Suter CR Worthington WJ Sun JF Nagle 1993 Measurement of chain tilt angle in fully hydrated bilayers of gel phase lecithins Biophys J 64 1097 1109 10.1016/S0006-3495(93)81475-9 8494973
48. S Tristram-Nagle JF Nagle 2007 HIV-1 fusion peptide decreases bending energy and promotes curved fusion intermediates Biophys J 93 2048 2055 10.1529/biophysj.107.109181 17526585 (Pubitemid 47437587)
49. GA Woolley BA Wallace 1992 Model ion channels: gramicidin and alamethicin J Membr Biol 129 109 136 1279177
50. L Yang TA Harroun WT Heller TM Weiss HW Huang 1998 Neutron off-plane scattering of aligned membranes. I. Method of measurement Biophys J 75 641 645 10.1016/S0006-3495(98)77554-X 9675166
51. L Yang TM Weiss TA Harroun WT Heller HW Huang 1999 Supramolecular structures of peptide assemblies in membranes by neutron off-plane scattering: method of analysis Biophys J 77 2648 2656 10.1016/S0006-3495(99)77099-2 10545365
52. L Yang TM Weiss RI Lehrer HW Huang 2000 Crystallization of antimicrobial pores in membranes: magainin and protegrin Biophys J 79 2002 2009 10.1016/S0006-3495(00)76448-4 11023904