-
1
-
-
0037465834
-
Cumulative effects of amino acid substitutions and hydrophobic mismatch upon the transmembrane stability and conformation of hydrophobic α-helices
-
Caputo, G. A., and London, E. (2003) Cumulative effects of amino acid substitutions and hydrophobic mismatch upon the transmembrane stability and conformation of hydrophobic α-helices, Biochemistry 42, 3275-3285.
-
(2003)
Biochemistry
, vol.42
, pp. 3275-3285
-
-
Caputo, G.A.1
London, E.2
-
2
-
-
0035969998
-
Polar side chains drive the association of model transmembrane peptides
-
Gratkowski, H., Lear, J. D., and DeGrado, W. F. (2001) Polar side chains drive the association of model transmembrane peptides, Proc. Natl. Acad. Sci. U.S.A. 98, 880-885.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 880-885
-
-
Gratkowski, H.1
Lear, J.D.2
DeGrado, W.F.3
-
3
-
-
0027499143
-
Nonrandom distribution of amino acids in the transmembrane segments of human type I single span membrane proteins
-
Landolt-Marticorena, C., Williams, K. A., Deber, C. M., and Reithmeier, R. A. (1993) Nonrandom distribution of amino acids in the transmembrane segments of human type I single span membrane proteins, J. Mol. Biol. 229, 602-608.
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 602-608
-
-
Landolt-Marticorena, C.1
Williams, K.A.2
Deber, C.M.3
Reithmeier, R.A.4
-
4
-
-
0032509124
-
Positively and negatively charged residues have different effects on the position in the membrane of a model transmembrane helix
-
Monne, M., Nilsson, I., Johansson, M., Elmhed, N., and von Heijne, G. (1998) Positively and negatively charged residues have different effects on the position in the membrane of a model transmembrane helix, J. Mol. Biol. 284, 1177-1183.
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 1177-1183
-
-
Monne, M.1
Nilsson, I.2
Johansson, M.3
Elmhed, N.4
Von Heijne, G.5
-
5
-
-
0030738720
-
Transmembrane orientation of hydrophobic α-helices is regulated both by the relationship of helix length to bilayer thickness and by the cholesterol concentration
-
Ren, J., Lew, S., Wang, Z., and London, E. (1997) Transmembrane orientation of hydrophobic α-helices is regulated both by the relationship of helix length to bilayer thickness and by the cholesterol concentration, Biochemistry 36, 10213-10220.
-
(1997)
Biochemistry
, vol.36
, pp. 10213-10220
-
-
Ren, J.1
Lew, S.2
Wang, Z.3
London, E.4
-
6
-
-
0034711953
-
The GxxxG motif: A framework for transmembrane helix-helix association
-
Russ, W. P., and Engelman, D. M. (2000) The GxxxG motif: A framework for transmembrane helix-helix association, J. Mol. Biol. 296, 911-919.
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 911-919
-
-
Russ, W.P.1
Engelman, D.M.2
-
7
-
-
0035807810
-
Specificity in transmembrane helix-helix interactions can define a hierarchy of stability for sequence variants
-
Fleming, K. G., and Engelman, D. M. (2001) Specificity in transmembrane helix-helix interactions can define a hierarchy of stability for sequence variants, Proc. Natl. Acad. Sci. U.S.A. 98, 14340-14344.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 14340-14344
-
-
Fleming, K.G.1
Engelman, D.M.2
-
8
-
-
0242551561
-
Inter-helical hydrogen bond formation during membrane protein integration into the ER membrane
-
Hermansson, M., and von Heijne, G. (2003) Inter-helical hydrogen bond formation during membrane protein integration into the ER membrane, J. Mol. Biol. 334, 803-809.
-
(2003)
J. Mol. Biol.
, vol.334
, pp. 803-809
-
-
Hermansson, M.1
Von Heijne, G.2
-
9
-
-
0007949690
-
Interhelical hydrogen bonding drives strong interactions in membrane proteins
-
Zhou, F. X., Cocco, M. J., Russ, W. P., Brunger, A. T., and Engelman, D. M. (2000) Interhelical hydrogen bonding drives strong interactions in membrane proteins, Nat. Struct. Biol. 7, 154-160.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 154-160
-
-
Zhou, F.X.1
Cocco, M.J.2
Russ, W.P.3
Brunger, A.T.4
Engelman, D.M.5
-
10
-
-
0034644762
-
Charge pair interactions in a model transmembrane helix in the ER membrane
-
Chin, C. N., and von Heijne, G. (2000) Charge pair interactions in a model transmembrane helix in the ER membrane, J. Mol. Biol. 303, 1-5.
-
(2000)
J. Mol. Biol.
, vol.303
, pp. 1-5
-
-
Chin, C.N.1
Von Heijne, G.2
-
11
-
-
0035956884
-
Polar residues drive association of polyleucine transmembrane helices
-
Zhou, F. X., Merianos, H. J., Brunger, A. T., and Engelman, D. M. (2001) Polar residues drive association of polyleucine transmembrane helices, Proc. Natl. Acad. Sci. U.S.A. 98, 2250-2255.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 2250-2255
-
-
Zhou, F.X.1
Merianos, H.J.2
Brunger, A.T.3
Engelman, D.M.4
-
12
-
-
0038010641
-
Position-dependence of stabilizing polar interactions of asparagine in transmembrane helical bundles
-
Lear, J. D., Gratkowski, H., Adamian, L., Liang, J., and DeGrado, W. F. (2003) Position-dependence of stabilizing polar interactions of asparagine in transmembrane helical bundles, Biochemistry 42, 6400-6407.
-
(2003)
Biochemistry
, vol.42
, pp. 6400-6407
-
-
Lear, J.D.1
Gratkowski, H.2
Adamian, L.3
Liang, J.4
DeGrado, W.F.5
-
13
-
-
0033522486
-
Control of the transmembrane orientation and interhelical interactions within membranes by hydrophobic helix length
-
Ren, J., Lew, S., Wang, J., and London, E. (1999) Control of the transmembrane orientation and interhelical interactions within membranes by hydrophobic helix length, Biochemistry 38, 5905-5912.
-
(1999)
Biochemistry
, vol.38
, pp. 5905-5912
-
-
Ren, J.1
Lew, S.2
Wang, J.3
London, E.4
-
14
-
-
0033737012
-
The topology of lysine-containing amphipathic peptides in bilayers by circular dichroism, solid-state NMR, and molecular modeling
-
Vogt, B., Ducarme, P., Schinzel, S., Brasseur, R., and Bechinger, B. (2000) The topology of lysine-containing amphipathic peptides in bilayers by circular dichroism, solid-state NMR, and molecular modeling, Biophys. J. 79, 2644-2656.
-
(2000)
Biophys. J.
, vol.79
, pp. 2644-2656
-
-
Vogt, B.1
Ducarme, P.2
Schinzel, S.3
Brasseur, R.4
Bechinger, B.5
-
15
-
-
0033783447
-
31P solid-state NMR spectroscopy investigation
-
31P solid-state NMR spectroscopy investigation, Biochemistry 39, 13106-13114.
-
(2000)
Biochemistry
, vol.39
, pp. 13106-13114
-
-
Harzer, U.1
Bechinger, B.2
-
16
-
-
0028142681
-
Effect of charged residue substitutions on the membrane-interactive properties of signal sequences of the Escherichia coli LamB protein
-
Jones, J. D., and Gierasch, L. M. (1994) Effect of charged residue substitutions on the membrane-interactive properties of signal sequences of the Escherichia coli LamB protein, Biophys. J. 67, 1534-1545.
-
(1994)
Biophys. J.
, vol.67
, pp. 1534-1545
-
-
Jones, J.D.1
Gierasch, L.M.2
-
17
-
-
0035843981
-
Effects of "hydrophobic mismatch" on the location of transmembrane helices in the ER membrane
-
Monne, M., and von Heijne, G. (2001) Effects of "hydrophobic mismatch" on the location of transmembrane helices in the ER membrane, FEBS Lett. 496, 96-100.
-
(2001)
FEBS Lett.
, vol.496
, pp. 96-100
-
-
Monne, M.1
Von Heijne, G.2
-
18
-
-
0041317291
-
The effect of interactions involving ionizable residues flanking membrane-inserted hydrophobic helices upon helix-helix interaction
-
Lew, S., Caputo, G. A., and London, E. (2003) The effect of interactions involving ionizable residues flanking membrane-inserted hydrophobic helices upon helix-helix interaction, Biochemistry 42, 10833-10842.
-
(2003)
Biochemistry
, vol.42
, pp. 10833-10842
-
-
Lew, S.1
Caputo, G.A.2
London, E.3
-
19
-
-
0034664083
-
The effects of polar and/or ionizable residues in the core and flanking regions of hydrophobic helices on transmembrane conformation and oligomerization
-
Lew, S., Ren, J., and London, E. (2000) The effects of polar and/or ionizable residues in the core and flanking regions of hydrophobic helices on transmembrane conformation and oligomerization, Biochemistry 39, 9632-9640.
-
(2000)
Biochemistry
, vol.39
, pp. 9632-9640
-
-
Lew, S.1
Ren, J.2
London, E.3
-
20
-
-
0034284386
-
How proteins adapt to a membrane-water interface
-
Killian, J. A., and von Heijne, G. (2000) How proteins adapt to a membrane-water interface, Trends Biochem. Sci. 25, 429-434.
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 429-434
-
-
Killian, J.A.1
Von Heijne, G.2
-
21
-
-
0025005439
-
Amphipathic helix motif: Classes and properties
-
Segrest, J. P., De Loof, H., Dohlman, J. G., Brouillette, C. G., and Anantharamaiah, G. M. (1990) Amphipathic helix motif: Classes and properties, Proteins 8, 103-117.
-
(1990)
Proteins
, vol.8
, pp. 103-117
-
-
Segrest, J.P.1
De Loof, H.2
Dohlman, J.G.3
Brouillette, C.G.4
Anantharamaiah, G.M.5
-
22
-
-
0038694994
-
Snorkeling of lysine side chains in transmembrane helices: How easy can it get?
-
Strandberg, E., and Killian, J. A. (2003) Snorkeling of lysine side chains in transmembrane helices: How easy can it get? FEBS Lett. 544, 69-73.
-
(2003)
FEBS Lett.
, vol.544
, pp. 69-73
-
-
Strandberg, E.1
Killian, J.A.2
-
23
-
-
0031571617
-
Simple procedure for reversed-phase high-performance liquid chromatographic purification of long hydrophobic peptides that form transmembrane helices
-
Lew, S., and London, E. (1997) Simple procedure for reversed-phase high-performance liquid chromatographic purification of long hydrophobic peptides that form transmembrane helices, Anal. Biochem. 251, 113-116.
-
(1997)
Anal. Biochem.
, vol.251
, pp. 113-116
-
-
Lew, S.1
London, E.2
-
24
-
-
0037465698
-
Using a novel dual fluorescence quenching assay for measurement of tryptophan depth within lipid bilayers to determine hydrophobic α-helix locations within membranes
-
Caputo, G. A., and London, E. (2003) Using a novel dual fluorescence quenching assay for measurement of tryptophan depth within lipid bilayers to determine hydrophobic α-helix locations within membranes, Biochemistry 42, 3265-3274.
-
(2003)
Biochemistry
, vol.42
, pp. 3265-3274
-
-
Caputo, G.A.1
London, E.2
-
25
-
-
0033042935
-
Estimation of the number of α-helical and β-strand segments in proteins using circular dichroism spectroscopy
-
Sreerama, N., Venyaminov, S. Y., and Woody, R. W. (1999) Estimation of the number of α-helical and β-strand segments in proteins using circular dichroism spectroscopy, Protein Sci. 8, 370-380.
-
(1999)
Protein Sci.
, vol.8
, pp. 370-380
-
-
Sreerama, N.1
Venyaminov, S.Y.2
Woody, R.W.3
-
26
-
-
0034672122
-
Estimation of protein secondary structure from circular dichroism spectra: Inclusion of denatured proteins with native proteins in the analysis
-
Sreerama, N., Venyaminov, S. Y., and Woody, R. W. (2000) Estimation of protein secondary structure from circular dichroism spectra: Inclusion of denatured proteins with native proteins in the analysis, Anal. Biochem. 287, 243-251.
-
(2000)
Anal. Biochem.
, vol.287
, pp. 243-251
-
-
Sreerama, N.1
Venyaminov, S.Y.2
Woody, R.W.3
-
27
-
-
0019873820
-
Estimation of globular protein secondary structure from circular dichroism
-
Provencher, S. W., and Glockner, J. (1981) Estimation of globular protein secondary structure from circular dichroism, Biochemistry 20, 33-37.
-
(1981)
Biochemistry
, vol.20
, pp. 33-37
-
-
Provencher, S.W.1
Glockner, J.2
-
28
-
-
0033562629
-
Analyzing protein circular dichroism spectra for accurate secondary structures
-
Johnson, W. C. (1999) Analyzing protein circular dichroism spectra for accurate secondary structures, Proteins 35, 307-312.
-
(1999)
Proteins
, vol.35
, pp. 307-312
-
-
Johnson, W.C.1
-
29
-
-
0021104058
-
Lipid bilayer thickness varies linearly with acyl chain length in fluid phosphatidylcholine vesicles
-
Lewis, B. A., and Engelman, D. M. (1983) Lipid bilayer thickness varies linearly with acyl chain length in fluid phosphatidylcholine vesicles, J. Mol. Biol. 166, 211-217.
-
(1983)
J. Mol. Biol.
, vol.166
, pp. 211-217
-
-
Lewis, B.A.1
Engelman, D.M.2
-
30
-
-
0033601259
-
Determination of the border between the transmembrane and cytoplasmic domains of human integrin subunits
-
Armulik, A., Nilsson, I., von Heijne, G., and Johansson, S. (1999) Determination of the border between the transmembrane and cytoplasmic domains of human integrin subunits, J. Biol. Chem. 274, 37030-37034.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 37030-37034
-
-
Armulik, A.1
Nilsson, I.2
Von Heijne, G.3
Johansson, S.4
-
31
-
-
0032509102
-
Proline-induced disruption of a transmembrane α-helix in its natural environment
-
Nilsson, I., Saaf, A., Whitley, P., Gafvelin, G., Waller, C., and von Heijne, G. (1998) Proline-induced disruption of a transmembrane α-helix in its natural environment, J. Mol. Biol. 284, 1165-1175.
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 1165-1175
-
-
Nilsson, I.1
Saaf, A.2
Whitley, P.3
Gafvelin, G.4
Waller, C.5
Von Heijne, G.6
-
32
-
-
0032509153
-
Breaking the camel's back: Proline-induced turns in a model transmembrane helix
-
Nilsson, I., and von Heijne, G. (1998) Breaking the camel's back: Proline-induced turns in a model transmembrane helix, J. Mol. Biol. 284, 1185-1189.
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 1185-1189
-
-
Nilsson, I.1
Von Heijne, G.2
-
33
-
-
0028818765
-
Lock on/off disulfides identify the transmembrane signaling helix of the aspartate receptor
-
Chervitz, S. A., and Falke, J. J. (1995) Lock on/off disulfides identify the transmembrane signaling helix of the aspartate receptor, J. Biol. Chem. 270 (41), 24043-24053.
-
(1995)
J. Biol. Chem.
, vol.270
, Issue.41
, pp. 24043-24053
-
-
Chervitz, S.A.1
Falke, J.J.2
-
34
-
-
0035312774
-
Transmembrane signaling in bacterial chemoreceptors
-
Falke, J. J., and Hazelbauer, G. L. (2001) Transmembrane signaling in bacterial chemoreceptors, Trends Biochem. Sci. 26, 257-265.
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 257-265
-
-
Falke, J.J.1
Hazelbauer, G.L.2
-
35
-
-
0029047850
-
Identification of functionally important helical faces in transmembrane segments by scanning mutagenesis
-
Lee, G. F., Dutton, D. P., and Hazelbauer, G. L. (1995) Identification of functionally important helical faces in transmembrane segments by scanning mutagenesis, Proc. Natl. Acad. Sci. U.S.A. 92, 5416-5420.
-
(1995)
Proc. Natl. Acad. Sci. U.S.A.
, vol.92
, pp. 5416-5420
-
-
Lee, G.F.1
Dutton, D.P.2
Hazelbauer, G.L.3
-
36
-
-
0029003146
-
Quantitative approaches to utilizing mutational analysis and disulfide cross-linking for modeling a transmembrane domain
-
Lee, G. F., and Hazelbauer, G. L. (1995) Quantitative approaches to utilizing mutational analysis and disulfide cross-linking for modeling a transmembrane domain, Protein Sci. 4, 1100-1107.
-
(1995)
Protein Sci.
, vol.4
, pp. 1100-1107
-
-
Lee, G.F.1
Hazelbauer, G.L.2
-
37
-
-
0035010155
-
Signaling substitutions in the periplasmic domain of chemoreceptor Trg induce or reduce helical sliding in the transmembrane domain
-
Beel, B. D., and Hazelbauer, G. L. (2001) Signaling substitutions in the periplasmic domain of chemoreceptor Trg induce or reduce helical sliding in the transmembrane domain, Mol. Microbiol. 40, 824-834.
-
(2001)
Mol. Microbiol.
, vol.40
, pp. 824-834
-
-
Beel, B.D.1
Hazelbauer, G.L.2
-
38
-
-
0029130732
-
Transmembrane signaling by the aspartate receptor: Engineered disulfides reveal static regions of the subunit interface
-
Chervitz, S. A., Lin, C. M., and Falke, J. J. (1995) Transmembrane signaling by the aspartate receptor: Engineered disulfides reveal static regions of the subunit interface, Biochemistry 34, 9722-9733.
-
(1995)
Biochemistry
, vol.34
, pp. 9722-9733
-
-
Chervitz, S.A.1
Lin, C.M.2
Falke, J.J.3
-
39
-
-
0029779670
-
Mutational analysis of a transmembrane segment in a bacterial chemoreceptor
-
Baumgartner, J. W., and Hazelbauer, G. L. (1996) Mutational analysis of a transmembrane segment in a bacterial chemoreceptor, J. Bacteriol. 178, 4651-4660.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 4651-4660
-
-
Baumgartner, J.W.1
Hazelbauer, G.L.2
-
40
-
-
0029910912
-
Detecting the conformational change of transmembrane signaling in a bacterial chemoreceptor by measuring effects on disulfide cross-linking in vivo
-
Hughson, A. G., and Hazelbauer, G. L. (1996) Detecting the conformational change of transmembrane signaling in a bacterial chemoreceptor by measuring effects on disulfide cross-linking in vivo, Proc. Natl. Acad. Sci. U.S.A. 93, 11546-11551.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 11546-11551
-
-
Hughson, A.G.1
Hazelbauer, G.L.2
-
41
-
-
0036097117
-
Site-directed spin labeling of a bacterial chemoreceptor reveals a dynamic, loosely packed transmembrane domain
-
Barnakov, A., Altenbach, C., Barnakova, L., Hubbell, W. L., and Hazelbauer, G. L. (2002) Site-directed spin labeling of a bacterial chemoreceptor reveals a dynamic, loosely packed transmembrane domain, Protein Sci. 11, 1472-1481.
-
(2002)
Protein Sci.
, vol.11
, pp. 1472-1481
-
-
Barnakov, A.1
Altenbach, C.2
Barnakova, L.3
Hubbell, W.L.4
Hazelbauer, G.L.5
-
42
-
-
0037022825
-
Site-directed rotational resonance solid-state NMR distance measurements probe structure and mechanism in the transmembrane domain of the serine bacterial chemoreceptor
-
Isaac, B., Gallagher, G. J., Balazs, Y. S., and Thompson, L. K. (2002) Site-directed rotational resonance solid-state NMR distance measurements probe structure and mechanism in the transmembrane domain of the serine bacterial chemoreceptor, Biochemistry 41, 3025-3036.
-
(2002)
Biochemistry
, vol.41
, pp. 3025-3036
-
-
Isaac, B.1
Gallagher, G.J.2
Balazs, Y.S.3
Thompson, L.K.4
-
43
-
-
1242352964
-
Side chains at the membrane-water interface modulate signaling state of a transmembrane receptor
-
Miller, A. S., and Falke, J. J. (2004) Side chains at the membrane-water interface modulate signaling state of a transmembrane receptor, Biochemistry 44, 1763-1770.
-
(2004)
Biochemistry
, vol.44
, pp. 1763-1770
-
-
Miller, A.S.1
Falke, J.J.2
-
44
-
-
0029881315
-
Strong hydrogen bonding interactions involving a buried glutamic acid in the transmembrane sequence of the neu/erbB-2 receptor
-
Smith, S. O., Smith, C. S., and Bormann, B. J. (1996) Strong hydrogen bonding interactions involving a buried glutamic acid in the transmembrane sequence of the neu/erbB-2 receptor, Nat. Struct. Biol. 3, 252-258.
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 252-258
-
-
Smith, S.O.1
Smith, C.S.2
Bormann, B.J.3
-
45
-
-
0032387826
-
Structural models of the bovine papillomavirus E5 protein
-
Surti, T., Klein, O., Aschheim, K., DiMaio, D., and Smith, S. O. (1998) Structural models of the bovine papillomavirus E5 protein, Proteins 33, 601-612.
-
(1998)
Proteins
, vol.33
, pp. 601-612
-
-
Surti, T.1
Klein, O.2
Aschheim, K.3
DiMaio, D.4
Smith, S.O.5
-
46
-
-
0019271816
-
Diphtheria toxin entry into cells is facilitated by low pH
-
Sandvig, K., and Olsnes, S. (1980) Diphtheria toxin entry into cells is facilitated by low pH, J. Cell. Biol. 87, 828-832.
-
(1980)
J. Cell. Biol.
, vol.87
, pp. 828-832
-
-
Sandvig, K.1
Olsnes, S.2
-
47
-
-
0026721333
-
Fluorescence studies of the secondary structure and orientation of a model ion channel peptide in phospholipid vesicles
-
Chung, L. A., Lear, J. D., and DeGrado, W. F. (1992) Fluorescence studies of the secondary structure and orientation of a model ion channel peptide in phospholipid vesicles, Biochemistry 31, 6608-6616.
-
(1992)
Biochemistry
, vol.31
, pp. 6608-6616
-
-
Chung, L.A.1
Lear, J.D.2
DeGrado, W.F.3
|